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COMPLEX TIME: Adaptation, Aging, & Arrow of Time

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Social status alters immune regulation and response to infection in macaques +
JennyTung  +
N
Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum +
MercedesPascual  +
E
Evidence of strain structure in Plasmodium falciparum var gene repertoires in children from Gabon, West Africa +
MercedesPascual  +
P
Precision Functional Mapping of Individual Human Brains +
CaterinaGratton  +
Predicting maximum tree heights and other traits from allometric scaling and resource limitations +
ChrisKempes  +
A
A model comparison approach shows stronger support for economic models of fertility decline +
MaryShenk  +
D
Domestic and International Climate Migration from Rural Mexico +
LoriHunter  +
S
Socially Embedded Preferences, Environmental Externalities, and Reproductive Rights +
AishaDasgupta  +
C
Climate shocks and rural-urban migration in Mexico: exploring nonlinearities and thresholds +
LoriHunter  +
O
On the decline of biodiversity due to area loss +
AndyRominger  +
P
Population axiology +
ChristopherCowie  +
T
The McKendrick partial differential equation and its uses in epidemiology and population study +
SimonLevin  +
C
Climate shocks and the timing of migration from Mexico +
LoriHunter  +
P
Predicting biodiversity change and averting collapse in agricultural landscapes +
AndyRominger  +
E
Emancipatory catastrophism: What does it mean to climate change and risk society? +
CarolineBledsoe  +
A
Amplification or suppression: Social networks and the climate change-migration association in rural Mexico +
LoriHunter  +
P
Population momentum across the demographic transition +
SimonLevin  +
T
The Causal Relationship between Fertility and Infant Mortality: Prospective analyses of a population in transition +
PaulHooper  +
H
How the World Survived the Population Bomb: Lessons From 50 Years of Extraordinary Demographic History +
MaryShenk  +
O
On Nonstable and Stable Population Momentum +
SimonLevin  +
L
Longevity Among Hunter- Gatherers: A Cross-Cultural Examination +
MaryShenk  +
R
Reproductive value, the stable stage distribution, and the sensitivity of the population growth rate to changes in vital rates +
MikePrice  +
Reproductive Mishaps and Western Contraception: An African Challenge to Fertility Theory +
CarolineBledsoe  +
E
Environmental Dimensions of Migration +
LoriHunter  +
R
Reproductive trade-offs in extant hunter-gatherers suggest adaptive mechanism for the Neolithic expansion +
MaryShenk  +
A
Age-structured and stage-structured population dynamics +
SimonLevin  +
T
The effect of environmental change on human migration +
LoriHunter  +
C
Chesapeake requiem +
CarolineBledsoe  +
R
Rural livelihoods and access to natural capital: Differences between migrants and non-migrants in Madagascar +
LoriHunter  +
V
Variation by geographic scale in the migration-environment asociation: Evidence from rural South Africa +
LoriHunter  +
I
International Climate Migration: Evidence for the Climate Inhibitor Mechanism and the Agricultural Pathway +
LoriHunter  +
P
Population and prehistory I: Food-dependent population growth in constant environments +
CharlotteLee  +
I
Intergenerational resource transfers with random offspring numbers +
SimonLevin  +
P
Population and prehistory II: Space-limited human populations in constant environments. +
CharlotteLee  +
I
In defence of repugnance +
ChristopherCowie  +
R
Risky business: Temporal and spatial variation in preindustrial dryland agriculture +
CharlotteLee  +
P
Population and prehistory III: Food-dependent demography in variable environments +
CharlotteLee  +
M
Modeling life expectancy and surplus production of dynamic pre-contact territories in leeward Kohala, Hawai'i +
CharlotteLee  +
S
Status competition, inequality, and fertility: Implications for the demographic transition +
MaryShenk  +
Social network- and community-level influences on contraceptive use: Evidence from rural poland +
MaryShenk  +
T
The Density of Social Networks and Fertility Decisions: Evidence From South Nyanza District, Kenya +
MaryShenk  +
R
Reproductive Responses to Economic Uncertainty +
MaryShenk  +
D
Data analysis using regression and multilevel/hierarchical models +
PaulHooper  +
M
Multilevel Analysis +
PaulHooper  +
O
On mixed-effect Cox models, sparse matrices, and modeling data from large pedigrees +
PaulHooper  +
Q
Quantitative, dynamic models to integrate environment, population, and society +
CharlotteLee  +
M
Mortality experience of Tsimane Amerindians of Bolivia: Regional variation and temporal trends +
PaulHooper  +
T
The epidemiologic transition: A theory of the epidemiology of population change +
UsamaBilal  +
E
Evolution and climate variability +
IzaRomanowska  +
A
Are There too Many Farms in the World? Labor-Market Transaction Costs, Machine Capacities and Optimal Farm Size +
AmyLastuka  +
Aging in complex interdependency networks +
DervisCanVural  +
I
Interdependence theory of tissue failure: Bulk and boundary effects +
DervisCanVural  +
Inferring network structure from cascades +
DervisCanVural  +
U
Uncoupling of Biological Oscillators +
TimBuchman  +
F
Fractal dynamics in physiology: Alterations with disease and aging +
LuisAmaral  +
T
The community of the self +
TimBuchman  +
E
Early-warning signals for critical transitions +
SanneGijzel  +
R
Reliability Theory of Aging and Longevity +
PeterMHoffmann  +
T
The community of the self2 +
TimBuchman  +
C
Critical slowing down as early warning for the onset and termination of depression3 +
SanneGijzel  +
D
Dynamical Resilience Indicators in Time Series of Self-Rated Health Correspond to Frailty Levels in Older Adults +
SanneGijzel  +
T
The resilience framework as a strategy to combat stress-related disorders +
ReneMelis  +
The resilience framework as a strategy to combat stress-related disorders2 +
ReneMelis  +
To adapt or not to adapt: consequences of declining adaptive homeostasis and proteases with age +
MarcelGMOldeRikkert  +
R
Reliability Theory of Aging and Longevity4 +
PeterMHoffmann  +
T
The resilience framework as a strategy to combat stress-related disorders3 +
ReneMelis  +
A
A Tissue Engineered Model of Aging: Interdependence and Cooperative Effects in Failing Tissues +
DervisCanVural  +
P
Physical resilience in older adults: Systematic review and development of an emerging construct +
HeatherWhitson  +
A
Asking the Right Questions in Alzheimer’s Research +
SusanFitzpatrick  +
H
Heuristic segmentation of a nonstationary time series +
LuisAmaral  +
A
A robust measure of food web intervality +
LuisAmaral  +
A truer measure of our ignorance +
LuisAmaral  +
P
PhysioBank, PhysioToolkit, and PhysioNet : Components of a New Research Resource for Complex Physiologic Signals +
LuisAmaral  +
D
Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems +
LuisAmaral  +
E
Emergence of complex dynamics in a simple model of signaling networks +
LuisAmaral  +
S
Social embeddedness in an online weight management programme is linked to greater weight loss +
LuisAmaral  +
Stimulus-response paradigm for characterizing the loss of resilience in homeostatic regulation associated with frailty3 +
RaviVaradhan  +
H
Hierarchy theory: the challenge of complex systems2 +
RaviVaradhan  +
C
Community of the Self +
TimBuchman  +
T
The community of the self3 +
TimBuchman  +
R
Rethinking resilience from indigenous perspectives +
PorterSwentzell  +
H
Health beliefs and the politics of Cree well-being +
PorterSwentzell  +
I
Indirect genetic effects clarify how traits can evolve even when fitness does not +
StephenProulx  +
M
Microbial interactions lead to rapid micro-scale successions on model marine particles +
OttoCordero  +
Multitrait successional forest dynamics enable diverse competitive coexistence +
OttoCordero  +
W
What can Invasion Analyses Tell us about Evolution under Stochasticity in Finite Populations ? +
StephenProulx  +
T
Temperature dependence of the functional response +
PriyangaAmarasekare  +
The common patterns of nature +
PriyangaAmarasekare  +
Temperature dependence of the functional response2 +
PriyangaAmarasekare  +
A
Adaptive foraging allows the maintenance of biodiversity of pollination networks +
FernandaValdovinos  +
N
Niche partitioning due to adaptive foraging reverses effects of nestedness and connectance on pollination network stability +
FernandaValdovinos  +
S
Species traits and network structure predict the success and impacts of pollinator invasions +
FernandaValdovinos  +
Single pollinator species losses reduce floral fidelity and plant reproductive function +
FernandaValdovinos  +
A
A high-bias low-variance introduction to machine learning for physicists +
RobertMarsland  +
Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities +
RobertMarsland  +
T
The Minimum Environmental Perturbation Principle: A New Perspective on Niche Theory +
RobertMarsland  +
U
Universally sloppy parameter sensitivities in systems biology models +
RobertMarsland  +
E
Emergent simplicity in microbial community assembly +
RobertMarsland  +
M
Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics +
RobertMarsland  +
S
Structure, function and diversity of the healthy human microbiome +
RobertMarsland  +
A
A communal catalogue reveals Earth's multiscale microbial diversity +
RobertMarsland  +
L
Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions +
RobertMarsland  +
T
Time and Irreversibility in axiomatic thermodynamics +
RobertMarsland  +
L
Limits of Prediction in thermodynamic systems: a review +
RobertMarsland  +
T
The transition between the niche and neutral regimes in ecology +
RobertMarsland  +
Transient phenomena in ecology +
StephenProulx  +
I
Increased Network Interdependency Leads to Aging +
DervisCanVural  +
T
The organization and control of an evolving interdependent population +
DervisCanVural  +
S
Shearing in flow environment promotes evolution of social behavior in microbial populations +
DervisCanVural  +
E
Eco-Evolutionary Theory and Insect Outbreaks +
GregDwyer  +
Effects of host heterogeneity on pathogen diversity and evolution +
GregDwyer  +
S
Statistical physics of self-replication +
RobertMarsland  +
P
Pawar systematic variation +
SamraatPawar  +
S
Systematic variation in the temperature dependence of physiological and ecological traits +
SamraatPawar  +
E
Elevated success of multispecies bacterial invasions impacts community composition during ecological succession +
SamraatPawar  +
S
Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life +
SamraatPawar  +
C
Correlation between interaction strengths drives stability in large ecological networks +
SamraatPawar  +
S
Stressor interaction networks suggest antibiotic resistance co-opted from stress responses to temperature +
SamraatPawar  +
M
Metabolic traits predict the effects of warming on phytoplankton +
SamraatPawar  +
Metabolic traits predict the effects of warming on phytoplankton competition +
SamraatPawar  +
T
Trophic interaction modifications: an empirical and theoretical framework +
SamraatPawar  +
F
Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton +
SamraatPawar  +
S
Species interactions alter evolutionary responses to a novel environment +
SamraatPawar  +
T
The Role of Body Size Variation in Community Assembly +
SamraatPawar  +
Temperature dependence of trophic interactions are driven by asymmetry of species responses and foraging strategy +
SamraatPawar  +
D
Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world +
PamelaMartinez  +
P
Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies +
PamelaMartinez  +
F
Frequency-dependent selection in vaccine-associated pneumococcal population dynamics +
PamelaMartinez  +
T
The application of statistical physics to evolutionary biology +
AnnetteOstling  +
N
Neutral theory for life histories +
ShripadTuljapurkar  +
T
The heritability of general cognitive ability increases linearly from childhood to young adulthood +
ShripadTuljapurkar  +
M
Markov mortality models: Implications of quasistationarity and varying initial distributions +
ShripadTuljapurkar  +
A
Aging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock +
SusanFitzpatrick  +
T
The Utility of Fisher's Geometric Model in Evolutionary Genetics Phenotypic complexity: the number of statistically independent phenotypic traits an organism exposes to natural selection in a given environment +
OphelieRonce  +
D
Demography of dietary restriction and death in Drosophila +
DarioValenzano  +
F
Fisher's geometrical model emerges as a property of complex integrated phenotypic networks +
OphelieRonce  +
D
Doi.org/10.1073/pnas.1810630115 +
MartenScheffer  +
I
In Vivo Amelioration of Age-Associated Hallmarks by Partial Reprogramming Cellular reprogramming by transient expression of Yamanaka factors ameliorates age-associated symptoms, prolongs lifespan in progeroid mice, and improves tissue homeostasis in older +
DarioValenzano  +
A
A theory of age-dependent mutation and senescence +
OphelieRonce  +
E
Extended Twilight among Isogenic C. elegans Causes a Disproportionate Scaling between Lifespan and Health +
SabrinaSpencer  +
R
Reduced lifespan and increased ageing driven by genetic drift in small populations +
OphelieRonce  +
E
Ecosystem tipping points in an evolving world +
OphelieRonce  +
F
Fisher's geometrical model and the mutational patterns of antibiotic resistance across dose gradients +
OphelieRonce  +
A
Ageing-associated disorders +
SabrinaSpencer  +
C
CD4 memory T cell levels predict life span in genetically heterogeneous mice. +
AndreaLGraham  +
A
A Major Role of the Macrophage in Quantitative Genetic Regulation of Immunoresponsiveness and Antiinfectious Immunity +
AndreaLGraham  +
C
Correlation between genetic regulation of immune responsiveness and host defence against infections and tumours +
AndreaLGraham  +
L
Life-Span, tumor incidence, and natural killer cell activity in mice selected for high or low antibody responsiveness +
AndreaLGraham  +
I
Inheritance of immune responsiveness, life span, and disease incidence in interline crosses of mice selected for high or low multispecific antibody production. +
AndreaLGraham  +
G
Genetic control of immune responsiveness, aging and tumor incidence +
AndreaLGraham  +
Genetic regulation of the specific and non-specific component of immunity +
AndreaLGraham  +
R
Robustness in biological and social systems +
DavidKrakauer  +
C
Communication dynamics in complex brain networks +
RussPoldrack  +
M
Maintenance, reserve and compensation: the cognitive neuroscience of healthy ageing +
RobertoCabeza  +
A
An Optimization-Based Approach to Understanding Sensory Systems +
RussPoldrack  +
S
Symmetry Breaking in Space-Time Hierarchies Shapes Brain Dynamics and Behavior +
ViktorJirsa  +
T
The future of human cerebral cartography: A novel approach +
RichardFrackowiak  +
L
Lost in translation +
RichardFrackowiak  +
T
The Hidden Repertoire of Brain Dynamics and Dysfunction +
RandyMcIntosh  +
O
On the low dimensionality of behavioral deficits and alterations of brain network connectivity after focal injury +
RandyMcIntosh  +
B
Brain disorders? Not really: Why network structures block reductionism in psychopathology research +
SusanFitzpatrick  +
R
Reorganization in Adult Primate Sensorimotor Cortex: Does It Really Happen? +
JohnKrakauer  +
Revisiting Lenneberg’s Hypotheses About Early Developmental Plasticity: Language Organization After Left-Hemisphere Perinatal Stroke +
JohnKrakauer  +
C
Critical dynamics of gene networks is a mechanism behind ageing and Gompertz law +
JacopoGrilli  +
T
The maps problem and the mapping problem: Two challenges for a cognitive neuroscience of speech and language +
JackGallant  +
N
Natural speech reveals the semantic maps that tile human cerebral cortex +
JackGallant  +
B
Brain state stability during working memory is explained by network control theory, modulated by dopamine D1/D2 receptor function, and diminished in schizophrenia +
DanielleBassett  +
H
Human information processing in complex networks +
DanielleBassett  +
N
Network measures predict neuropsychological outcome after brain injury +
CaterinaGratton  +
F
Functional Brain Networks Are Dominated by Stable Group and Individual Factors, Not Cognitive or Daily Variation +
CaterinaGratton  +
T
The Island Where People Forget to Die - The New York Times +
GaganWig  +
S
Socioeconomic status moderates age-related differences in the brain’s functional network organization and anatomy across the adult lifespan2 +
GaganWig  +
M
Modulations of the experience of self and time +
PaulGarcia  +
T
The Diagnosis of Delirium Superimposed on Dementia: An Emerging Challenge +
PaulGarcia  +
E
Effects of Meditation Experience on Functional Connectivity of Distributed Brain Networks +
PaulGarcia  +
D
Decreased segregation of brain systems across the healthy adult lifespan +
GaganWig  +
E
Emergent Functional Network Effects in Parkinson Disease +
StevenPetersen  +
D
Decline of long-range temporal correlations in the human brain during sustained wakefulness +
DietmarPlenz  +
A
Altered avalanche dynamics in a developmental NMDAR hypofunction model of cognitive impairment +
DietmarPlenz  +
S
Searching for rewards like a child means less generalization and more directed exploration +
SusanFitzpatrick  +
P
Process-Specific Alliances (PSAs) in Cognitive Neuroscience +
RobertoCabeza  +
T
The Effects of APOE and ABCA7 on Cognitive Function and Alzheimer’s Disease Risk in African Americans: A Focused Mini Review +
SusanFitzpatrick  +
C
Choosing Prediction Over Explanation in Psychology: Lessons From Machine Learning +
JackGallant  +
U
Unstable neurons underlie a stable learned behavior +
Ehren Newman  +
A
A Neural Network Model of Retrieval-Induced Forgetting +
Ehren Newman  +
N
Neuronal avalanches and coherence potentials +
DietmarPlenz  +
C
Cholinergic modulation of cognitive processing: Insights drawn from computational models +
Ehren Newman  +
Coherence potentials: Loss-less, all-or-none network events in the cortex +
DietmarPlenz  +
R
Remembering to forget: A dual role for sleep oscillations in memory consolidation and forgetting +
GinaPoe  +
M
Macroscopic Models for Human Circadian Rhythms +
ElizabethKlerman  +
S
Sleep is for forgetting +
GinaPoe  +
T
The function of dream sleep +
GinaPoe  +
E
Experience-dependent phase-reversal of hippocampal neuron firing during REM sleep +
GinaPoe  +
I
Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: Relevance to REM sleep reactivation and memory consolidation +
GinaPoe  +
R
REM restriction persistently alters strategy used to solve a spatial task +
GinaPoe  +
T
The human emotional brain without sleep - a prefrontal amygdala disconnect +
GinaPoe  +
C
Cognitive neuroscience of sleep +
GinaPoe  +
A
Antidepressant suppression of non-REM sleep spindles and REM sleep impairs hippocampus-dependent learning while augmenting striatum-dependent learning +
GinaPoe  +
Abnormal Locus Coeruleus Sleep Activity Alters Sleep Signatures of Memory Consolidation and Impairs Place Cell Stability and Spatial Memory +
GinaPoe  +
S
Sleep contributes to dendritic spine formation and elimination in the developing mouse somatosensory cortex +
GinaPoe  +
H
Homer1a drives homeostatic scaling-down of excitatory synapses during sleep +
GinaPoe  +
R
REM sleep selectively prunes and maintains new synapses in development and learning +
GinaPoe  +
S
Sleep to remember +
SusanSara  +
M
Modeling the temporal architecture of rat sleep-wake behavior. +
CeciliaDinizBehn  +
R
Reactivation, retrieval, replay and reconsolidation in and out of sleep: Connecting the dots +
SusanSara  +
P
Probabilistic sleep architecture models in patients with and without sleep apnea +
VictoriaBooth  +
E
Effects of thermoregulation on human sleep patterns a mathematical model +
CeciliaDinizBehn  +
S
Spindle Activity in the Waking EEG in Older Adults +
RobertStickgold  +
M
Modeling transformations of neurodevelopmental sequences across mammalian species +
KimberleyWhitehead  +
Multi-day rhythms modulate seizure risk in epilepsy +
KimberleyWhitehead  +
K
K-complex, a reactive EEG graphoelement of NREM sleep: An old chap in a new garment +
KimberleyWhitehead  +
H
Human cortical excitability increases with time awake +
KimberleyWhitehead  +
High sensitivity and interindividual variability in the response of the human circadian system to evening light +
ElizabethKlerman  +
A
An exploration of the temporal dynamics +
ElizabethKlerman  +
C
Circadian phenotype impacts the brain's resting-state functional connectivity, attentional performance, and sleepiness +
ElizabethKlerman  +
G
Genetics of the human circadian clock and sleep homeostat +
ElizabethKlerman  +
C
Control of Mammalian Circadian Rhythm by CKI -Regulated Proteasome-Mediated PER2 Degradation +
ElizabethKlerman  +
A
Are individual differences in sleep and circadian timing amplified by use of artificial light sources? +
ElizabethKlerman  +
A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period +
ElizabethKlerman  +
C
Comparing the Morningness-Eveningness Questionnaire and Munich ChronoType Questionnaire to the dim light melatonin onset +
ElizabethKlerman  +
E
Entrainment of the human circadian clock to the natural light-dark cycle +
ElizabethKlerman  +
R
Revisiting spontaneous internal desynchrony using a quantitative model of sleep physiology +
ElizabethKlerman  +
T
Timing of Sleep and Its Relationship with the Endogenous Melatonin Rhythm +
ElizabethKlerman  +
M
Mammalian sleep dynamics: How diverse features arise from a common physiological framework +
ElizabethKlerman  +
E
Exposure to room light before bedtime suppresses melatonin onset and shortens melatonin duration in humans +
ElizabethKlerman  +
A
Addition of a non-photic component to a light-based mathematical model of the human circadian pacemaker +
ElizabethKlerman  +
R
Review: On mathematical modeling of circadian rhythms, performance, and alertness +
ElizabethKlerman  +
A
An opposite role for tau in circadian rhythms revealed by mathematical modeling +
ElizabethKlerman  +
I
Intrinsic period and light intensity determine the phase relationship between melatonin and sleep in humans +
ElizabethKlerman  +
P
Peak of circadian melatonin rhythm occurs later within the sleep of older subjects +
ElizabethKlerman  +
C
Circadian temperature and melatonin rhythms, sleep, and neurobehavioral function in humans living on a 20-h day +
ElizabethKlerman  +
Q
Quantifying Human Circadian Pacemaker Response to Brief, Extended, and Repeated Light Stimuli over the Phototopic Range +
ElizabethKlerman  +
A
A Simpler Model of the Human Circadian Pacemaker +
ElizabethKlerman  +
Ageing and the circadian and homeostatic regulation of human sleep during forced desynchrony of rest, melatonin and temperature rhythms +
ElizabethKlerman  +
S
Simulations of light effects on the human circadian pacemaker: Implications for assessment of intrinsic period +
ElizabethKlerman  +
P
Paradoxical timing of the circadian rhythm of sleep propensity serves to consolidate sleep and wakefulness in humans +
ElizabethKlerman  +
A
A quantitative model for the effects of light on the amplitude and phase of the deep circadian pacemaker based on human data +
ElizabethKlerman  +
C
Circadian pacemaker interferes with sleep onset at specific times each day: Role in insomnia +
ElizabethKlerman  +
Circadian regulation dominates homeostatic control of sleep length and prior wake length in humans +
ElizabethKlerman  +
M
Mathematical model of the human circadian system with two interacting oscillators. +
ElizabethKlerman  +
A
A two process model of sleep regulation +
ElizabethKlerman  +
P
Parvalbumin-expressing interneurons coordinate hippocampal network dynamics required for memory consolidation +
SaraAton  +
H
Hippocampal network oscillations rescue memory consolidation deficits caused by sleep loss +
SaraAton  +
C
Cortically coordinated NREM thalamocortical oscillations play an essential, instructive role in visual system plasticity +
SaraAton  +
P
Provinciali et al 2009 +
AndreaLGraham  +
A
Aging, mortality, and the fast growth trade-off of Schizosaccharomyces pombe +
MatteoOsella  +
D
Diversity of ageing across the tree of life +
Owen Jones  +
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