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COMPLEX TIME: Adaptation, Aging, & Arrow of Time

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Contact: Caitlin Lorraine McShea, Program Manager, cmcshea@santafe.edu

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  1. Population and the Environment: Analytical Demography and Applied Population Ethics‏‎ (72 links)
  2. Cognitive Regime Shift II - When/why/how the Brain Breaks‏‎ (42 links)
  3. Dynamic Multi-System Resilience in Human Aging‏‎ (34 links)
  4. Template:En‏‎ (32 links)
  5. Hallmarks of Biological Failure‏‎ (31 links)
  6. Irreversible Processes in Ecological Evolution‏‎ (31 links)
  7. Aging and Adaptation in Infectious Diseases‏‎ (24 links)
  8. What is Sleep?‏‎ (23 links)
  9. The Origin and Implication of Time in Adaptive Systems‏‎ (21 links)
  10. Cognitive Regime Shift I - When the Brain Breaks‏‎ (20 links)
  11. Aging and Adaptation in Infectious Diseases II‏‎ (19 links)
  12. Aging and Adaptation in Infectious Diseases III‏‎ (19 links)
  13. User:DavidKrakauer‏‎ (19 links)
  14. User:AmyPChen‏‎ (17 links)
  15. Complex Time:Hooks/Meeting/Bottom‏‎ (15 links)
  16. Complex Time:Hooks/Meeting/Reference Material Tab Top‏‎ (15 links)
  17. The Complexity of Time‏‎ (13 links)
  18. User:SusanFitzpatrick‏‎ (13 links)
  19. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life‏‎ (12 links)
  20. User:DavidSchneider‏‎ (12 links)
  21. User:JacopoGrilli‏‎ (12 links)
  22. User:JeanCarlson‏‎ (12 links)
  23. User:MercedesPascual‏‎ (12 links)
  24. 2019 Advisory Board Meeting‏‎ (10 links)
  25. A Stab at Time‏‎ (10 links)
  26. User:VanSavage‏‎ (10 links)
  27. User:ChrisKempes‏‎ (9 links)
  28. User:AndreaLGraham‏‎ (8 links)
  29. User:AndrewPDobson‏‎ (8 links)
  30. User:DervisCanVural‏‎ (8 links)
  31. A Tissue Engineered Model of Aging: Interdependence and Cooperative Effects in Failing Tissues‏‎ (7 links)
  32. Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum‏‎ (7 links)
  33. User:CaterinaGratton‏‎ (7 links)
  34. User:DanielPromislow‏‎ (7 links)
  35. User:GeoffreyWest‏‎ (7 links)
  36. User:MarcelGMOldeRikkert‏‎ (7 links)
  37. User:PamelaMartinez‏‎ (7 links)
  38. User:PaulHooper‏‎ (7 links)
  39. User:SarahCobey‏‎ (7 links)
  40. User:StevenPetersen‏‎ (7 links)
  41. A communal catalogue reveals Earth's multiscale microbial diversity‏‎ (6 links)
  42. A high-bias low-variance introduction to machine learning for physicists‏‎ (6 links)
  43. A model comparison approach shows stronger support for economic models of fertility decline‏‎ (6 links)
  44. Abnormal Locus Coeruleus Sleep Activity Alters Sleep Signatures of Memory Consolidation and Impairs Place Cell Stability and Spatial Memory‏‎ (6 links)
  45. Adaptive foraging allows the maintenance of biodiversity of pollination networks‏‎ (6 links)
  46. Age-structured and stage-structured population dynamics‏‎ (6 links)
  47. Aging in complex interdependency networks‏‎ (6 links)
  48. Amplification or suppression: Social networks and the climate change-migration association in rural Mexico‏‎ (6 links)
  49. Antidepressant suppression of non-REM sleep spindles and REM sleep impairs hippocampus-dependent learning while augmenting striatum-dependent learning‏‎ (6 links)
  50. Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities‏‎ (6 links)
  51. Chesapeake requiem‏‎ (6 links)
  52. Climate shocks and rural-urban migration in Mexico: exploring nonlinearities and thresholds‏‎ (6 links)
  53. Climate shocks and the timing of migration from Mexico‏‎ (6 links)
  54. Cognitive neuroscience of sleep‏‎ (6 links)
  55. Community of the Self‏‎ (6 links)
  56. Correlation between interaction strengths drives stability in large ecological networks‏‎ (6 links)
  57. Critical slowing down as early warning for the onset and termination of depression3‏‎ (6 links)
  58. Data analysis using regression and multilevel/hierarchical models‏‎ (6 links)
  59. Decreased segregation of brain systems across the healthy adult lifespan‏‎ (6 links)
  60. Domestic and International Climate Migration from Rural Mexico‏‎ (6 links)
  61. Dynamical Resilience Indicators in Time Series of Self-Rated Health Correspond to Frailty Levels in Older Adults‏‎ (6 links)
  62. Early-warning signals for critical transitions‏‎ (6 links)
  63. Eco-Evolutionary Theory and Insect Outbreaks‏‎ (6 links)
  64. Effects of host heterogeneity on pathogen diversity and evolution‏‎ (6 links)
  65. Elevated success of multispecies bacterial invasions impacts community composition during ecological succession‏‎ (6 links)
  66. Emancipatory catastrophism: What does it mean to climate change and risk society?‏‎ (6 links)
  67. Emergent simplicity in microbial community assembly‏‎ (6 links)
  68. Environmental Dimensions of Migration‏‎ (6 links)
  69. Evidence of strain structure in Plasmodium falciparum var gene repertoires in children from Gabon, West Africa‏‎ (6 links)
  70. Experience-dependent phase-reversal of hippocampal neuron firing during REM sleep‏‎ (6 links)
  71. Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton‏‎ (6 links)
  72. Hierarchy theory: the challenge of complex systems2‏‎ (6 links)
  73. Homer1a drives homeostatic scaling-down of excitatory synapses during sleep‏‎ (6 links)
  74. How the World Survived the Population Bomb: Lessons From 50 Years of Extraordinary Demographic History‏‎ (6 links)
  75. In defence of repugnance‏‎ (6 links)
  76. Increased Network Interdependency Leads to Aging‏‎ (6 links)
  77. Indirect genetic effects clarify how traits can evolve even when fitness does not‏‎ (6 links)
  78. Inferring network structure from cascades‏‎ (6 links)
  79. Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: Relevance to REM sleep reactivation and memory consolidation‏‎ (6 links)
  80. Interdependence theory of tissue failure: Bulk and boundary effects‏‎ (6 links)
  81. Intergenerational resource transfers with random offspring numbers‏‎ (6 links)
  82. International Climate Migration: Evidence for the Climate Inhibitor Mechanism and the Agricultural Pathway‏‎ (6 links)
  83. Limits of Prediction in thermodynamic systems: a review‏‎ (6 links)
  84. Longevity Among Hunter- Gatherers: A Cross-Cultural Examination‏‎ (6 links)
  85. Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions‏‎ (6 links)
  86. Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics‏‎ (6 links)
  87. Metabolic traits predict the effects of warming on phytoplankton‏‎ (6 links)
  88. Metabolic traits predict the effects of warming on phytoplankton competition‏‎ (6 links)
  89. Microbial interactions lead to rapid micro-scale successions on model marine particles‏‎ (6 links)
  90. Modeling life expectancy and surplus production of dynamic pre-contact territories in leeward Kohala, Hawai'i‏‎ (6 links)
  91. Mortality experience of Tsimane Amerindians of Bolivia: Regional variation and temporal trends‏‎ (6 links)
  92. Multilevel Analysis‏‎ (6 links)
  93. Multitrait successional forest dynamics enable diverse competitive coexistence‏‎ (6 links)
  94. Niche partitioning due to adaptive foraging reverses effects of nestedness and connectance on pollination network stability‏‎ (6 links)
  95. On Nonstable and Stable Population Momentum‏‎ (6 links)
  96. On mixed-effect Cox models, sparse matrices, and modeling data from large pedigrees‏‎ (6 links)
  97. On the decline of biodiversity due to area loss‏‎ (6 links)
  98. Pawar systematic variation‏‎ (6 links)
  99. Physical resilience in older adults: Systematic review and development of an emerging construct‏‎ (6 links)
  100. Population and prehistory I: Food-dependent population growth in constant environments‏‎ (6 links)
  101. Population and prehistory II: Space-limited human populations in constant environments.‏‎ (6 links)
  102. Population and prehistory III: Food-dependent demography in variable environments‏‎ (6 links)
  103. Population axiology‏‎ (6 links)
  104. Population momentum across the demographic transition‏‎ (6 links)
  105. Precision Functional Mapping of Individual Human Brains‏‎ (6 links)
  106. Predicting biodiversity change and averting collapse in agricultural landscapes‏‎ (6 links)
  107. Predicting maximum tree heights and other traits from allometric scaling and resource limitations‏‎ (6 links)
  108. Quantitative, dynamic models to integrate environment, population, and society‏‎ (6 links)
  109. REM restriction persistently alters strategy used to solve a spatial task‏‎ (6 links)
  110. REM sleep selectively prunes and maintains new synapses in development and learning‏‎ (6 links)
  111. Reactivation, retrieval, replay and reconsolidation in and out of sleep: Connecting the dots‏‎ (6 links)
  112. Reliability Theory of Aging and Longevity‏‎ (6 links)
  113. Reliability Theory of Aging and Longevity4‏‎ (6 links)
  114. Remembering to forget: A dual role for sleep oscillations in memory consolidation and forgetting‏‎ (6 links)
  115. Reproductive Mishaps and Western Contraception: An African Challenge to Fertility Theory‏‎ (6 links)
  116. Reproductive Responses to Economic Uncertainty‏‎ (6 links)
  117. Reproductive trade-offs in extant hunter-gatherers suggest adaptive mechanism for the Neolithic expansion‏‎ (6 links)
  118. Rethinking resilience from indigenous perspectives‏‎ (6 links)
  119. Risky business: Temporal and spatial variation in preindustrial dryland agriculture‏‎ (6 links)
  120. Rural livelihoods and access to natural capital: Differences between migrants and non-migrants in Madagascar‏‎ (6 links)
  121. Shearing in flow environment promotes evolution of social behavior in microbial populations‏‎ (6 links)
  122. Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life‏‎ (6 links)
  123. Single pollinator species losses reduce floral fidelity and plant reproductive function‏‎ (6 links)
  124. Sleep contributes to dendritic spine formation and elimination in the developing mouse somatosensory cortex‏‎ (6 links)
  125. Sleep is for forgetting‏‎ (6 links)
  126. Sleep to remember‏‎ (6 links)
  127. Social network- and community-level influences on contraceptive use: Evidence from rural poland‏‎ (6 links)
  128. Socially Embedded Preferences, Environmental Externalities, and Reproductive Rights‏‎ (6 links)
  129. Species interactions alter evolutionary responses to a novel environment‏‎ (6 links)
  130. Species traits and network structure predict the success and impacts of pollinator invasions‏‎ (6 links)
  131. Statistical physics of self-replication‏‎ (6 links)
  132. Status competition, inequality, and fertility: Implications for the demographic transition‏‎ (6 links)
  133. Stimulus-response paradigm for characterizing the loss of resilience in homeostatic regulation associated with frailty3‏‎ (6 links)
  134. Stressor interaction networks suggest antibiotic resistance co-opted from stress responses to temperature‏‎ (6 links)
  135. Structure, function and diversity of the healthy human microbiome‏‎ (6 links)
  136. Systematic variation in the temperature dependence of physiological and ecological traits‏‎ (6 links)
  137. Temperature dependence of the functional response‏‎ (6 links)
  138. Temperature dependence of the functional response2‏‎ (6 links)
  139. Temperature dependence of trophic interactions are driven by asymmetry of species responses and foraging strategy‏‎ (6 links)
  140. The Causal Relationship between Fertility and Infant Mortality: Prospective analyses of a population in transition‏‎ (6 links)
  141. The Density of Social Networks and Fertility Decisions: Evidence From South Nyanza District, Kenya‏‎ (6 links)
  142. The McKendrick partial differential equation and its uses in epidemiology and population study‏‎ (6 links)
  143. The Minimum Environmental Perturbation Principle: A New Perspective on Niche Theory‏‎ (6 links)
  144. The Role of Body Size Variation in Community Assembly‏‎ (6 links)
  145. The application of statistical physics to evolutionary biology‏‎ (6 links)
  146. The common patterns of nature‏‎ (6 links)
  147. The community of the self‏‎ (6 links)
  148. The community of the self2‏‎ (6 links)
  149. The community of the self3‏‎ (6 links)
  150. The effect of environmental change on human migration‏‎ (6 links)
  151. The function of dream sleep‏‎ (6 links)
  152. The human emotional brain without sleep - a prefrontal amygdala disconnect‏‎ (6 links)
  153. The organization and control of an evolving interdependent population‏‎ (6 links)
  154. The transition between the niche and neutral regimes in ecology‏‎ (6 links)
  155. Time and Irreversibility in axiomatic thermodynamics‏‎ (6 links)
  156. To adapt or not to adapt: consequences of declining adaptive homeostasis and proteases with age‏‎ (6 links)
  157. Transient phenomena in ecology‏‎ (6 links)
  158. Trophic interaction modifications: an empirical and theoretical framework‏‎ (6 links)
  159. Uncoupling of Biological Oscillators‏‎ (6 links)
  160. Universally sloppy parameter sensitivities in systems biology models‏‎ (6 links)
  161. Variation by geographic scale in the migration-environment asociation: Evidence from rural South Africa‏‎ (6 links)
  162. What can Invasion Analyses Tell us about Evolution under Stochasticity in Finite Populations ?‏‎ (6 links)
  163. User:AlanPerelson‏‎ (6 links)
  164. User:JohnHarte‏‎ (6 links)
  165. User:KaroleArmitage‏‎ (6 links)
  166. User:MicaelaMartinez‏‎ (6 links)
  167. User:MichaelHochberg‏‎ (6 links)
  168. File:Avena-Koenigsberger et al 2018 Nature Reviews Neuroscience.pdf‏‎ (6 links)
  169. File:Berg et al. 2019.pdf‏‎ (6 links)
  170. File:Borsboom et al. 2019 Behavioral and Brain Sciences.pdf‏‎ (6 links)
  171. File:Cabeza18 ProcessSpecificAlliances TICS.pdf‏‎ (6 links)
  172. File:Cabeza et al 2018 Nature Reviews Neuroscience.pdf‏‎ (6 links)
  173. File:Corbetta et al 2018 Cortex.pdf‏‎ (6 links)
  174. File:Flack et al. 2012 Robustness in Biological and Social Systems in Evolution and the Mechanisms of Decision Making.pdf‏‎ (6 links)
  175. File:Frackowiak and Markram 2015 Philos Trans R Soc Lond B Biol Sci.pdf‏‎ (6 links)
  176. File:Gratton et al. 2019 Cereb Cortex.pdf‏‎ (6 links)
  177. File:Huth et al 2016 Nature.pdf‏‎ (6 links)
  178. File:Makin et al. Chapter.pdf‏‎ (6 links)
  179. File:Nachev et al 2019 F1000Res.pdf‏‎ (6 links)
  180. File:Newport et al. 2017 Biolinguistics (Nicos).pdf‏‎ (6 links)
  181. File:Pillai and Jirsa 2017 Neuron.pdf‏‎ (6 links)
  182. File:Plenz EuPhysJ2012.pdf‏‎ (6 links)
  183. File:Podolskiy et al. 2016 q-bio.pdf‏‎ (6 links)
  184. File:Poeppel D. 2012 Cognitive Neuropsychology.pdf‏‎ (6 links)
  185. File:Thiagarajan PLoSBiol2010 MainSuppInfo.pdf‏‎ (6 links)
  186. File:Yamins Gazzaniga Chapter.pdf‏‎ (6 links)
  187. A Major Role of the Macrophage in Quantitative Genetic Regulation of Immunoresponsiveness and Antiinfectious Immunity‏‎ (5 links)
  188. A Neural Network Model of Retrieval-Induced Forgetting‏‎ (5 links)
  189. A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period‏‎ (5 links)
  190. A Simpler Model of the Human Circadian Pacemaker‏‎ (5 links)
  191. A quantitative model for the effects of light on the amplitude and phase of the deep circadian pacemaker based on human data‏‎ (5 links)
  192. A robust measure of food web intervality‏‎ (5 links)
  193. A theory of age-dependent mutation and senescence‏‎ (5 links)
  194. A truer measure of our ignorance‏‎ (5 links)
  195. A two process model of sleep regulation‏‎ (5 links)
  196. Addition of a non-photic component to a light-based mathematical model of the human circadian pacemaker‏‎ (5 links)
  197. Ageing-associated disorders‏‎ (5 links)
  198. Ageing and the circadian and homeostatic regulation of human sleep during forced desynchrony of rest, melatonin and temperature rhythms‏‎ (5 links)
  199. Aging and Adaptation in Infectious Diseases/SFI/JSMF Aging, Adaptation, and the Arrow of Time Research Theme; Overview‏‎ (5 links)
  200. Altered avalanche dynamics in a developmental NMDAR hypofunction model of cognitive impairment‏‎ (5 links)
  201. An Optimization-Based Approach to Understanding Sensory Systems‏‎ (5 links)
  202. An exploration of the temporal dynamics‏‎ (5 links)
  203. An opposite role for tau in circadian rhythms revealed by mathematical modeling‏‎ (5 links)
  204. Are There too Many Farms in the World? Labor-Market Transaction Costs, Machine Capacities and Optimal Farm Size‏‎ (5 links)
  205. Are individual differences in sleep and circadian timing amplified by use of artificial light sources?‏‎ (5 links)
  206. Asking the Right Questions in Alzheimer’s Research‏‎ (5 links)
  207. Brain disorders? Not really: Why network structures block reductionism in psychopathology research‏‎ (5 links)
  208. CD4 memory T cell levels predict life span in genetically heterogeneous mice.‏‎ (5 links)
  209. Cholinergic modulation of cognitive processing: Insights drawn from computational models‏‎ (5 links)
  210. Choosing Prediction Over Explanation in Psychology: Lessons From Machine Learning‏‎ (5 links)
  211. Circadian pacemaker interferes with sleep onset at specific times each day: Role in insomnia‏‎ (5 links)
  212. Circadian phenotype impacts the brain's resting-state functional connectivity, attentional performance, and sleepiness‏‎ (5 links)
  213. Circadian regulation dominates homeostatic control of sleep length and prior wake length in humans‏‎ (5 links)
  214. Circadian temperature and melatonin rhythms, sleep, and neurobehavioral function in humans living on a 20-h day‏‎ (5 links)
  215. Coherence potentials: Loss-less, all-or-none network events in the cortex‏‎ (5 links)
  216. Communication dynamics in complex brain networks‏‎ (5 links)
  217. Comparing the Morningness-Eveningness Questionnaire and Munich ChronoType Questionnaire to the dim light melatonin onset‏‎ (5 links)
  218. Control of Mammalian Circadian Rhythm by CKI -Regulated Proteasome-Mediated PER2 Degradation‏‎ (5 links)
  219. Coordinated reset vibrotactile stimulation shows prolonged improvement in Parkinson's disease‏‎ (5 links)
  220. Correlation between genetic regulation of immune responsiveness and host defence against infections and tumours‏‎ (5 links)
  221. Critical dynamics of gene networks is a mechanism behind ageing and Gompertz law‏‎ (5 links)
  222. Decline of long-range temporal correlations in the human brain during sustained wakefulness‏‎ (5 links)
  223. Demography of dietary restriction and death in Drosophila‏‎ (5 links)
  224. Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world‏‎ (5 links)
  225. Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems‏‎ (5 links)
  226. Doi.org/10.1073/pnas.1810630115‏‎ (5 links)
  227. Dynamic Multi-System Resilience in Human Aging/Welcome & introduction around the Room‏‎ (5 links)
  228. Ecosystem tipping points in an evolving world‏‎ (5 links)
  229. Effects of Meditation Experience on Functional Connectivity of Distributed Brain Networks‏‎ (5 links)
  230. Effects of thermoregulation on human sleep patterns a mathematical model‏‎ (5 links)
  231. Emergence of complex dynamics in a simple model of signaling networks‏‎ (5 links)
  232. Emergent Functional Network Effects in Parkinson Disease‏‎ (5 links)
  233. Entrainment of the human circadian clock to the natural light-dark cycle‏‎ (5 links)
  234. Evolution and climate variability‏‎ (5 links)
  235. Exposure to room light before bedtime suppresses melatonin onset and shortens melatonin duration in humans‏‎ (5 links)
  236. Extended Twilight among Isogenic C. elegans Causes a Disproportionate Scaling between Lifespan and Health‏‎ (5 links)
  237. Fisher's geometrical model and the mutational patterns of antibiotic resistance across dose gradients‏‎ (5 links)
  238. Fisher's geometrical model emerges as a property of complex integrated phenotypic networks‏‎ (5 links)
  239. Fractal dynamics in physiology: Alterations with disease and aging‏‎ (5 links)
  240. Frequency-dependent selection in vaccine-associated pneumococcal population dynamics‏‎ (5 links)
  241. Functional Brain Networks Are Dominated by Stable Group and Individual Factors, Not Cognitive or Daily Variation‏‎ (5 links)
  242. Genetic control of immune responsiveness, aging and tumor incidence‏‎ (5 links)
  243. Genetic regulation of the specific and non-specific component of immunity‏‎ (5 links)
  244. Genetics of the human circadian clock and sleep homeostat‏‎ (5 links)
  245. Health beliefs and the politics of Cree well-being‏‎ (5 links)
  246. Heuristic segmentation of a nonstationary time series‏‎ (5 links)
  247. High sensitivity and interindividual variability in the response of the human circadian system to evening light‏‎ (5 links)
  248. Human cortical excitability increases with time awake‏‎ (5 links)
  249. In Vivo Amelioration of Age-Associated Hallmarks by Partial Reprogramming Cellular reprogramming by transient expression of Yamanaka factors ameliorates age-associated symptoms, prolongs lifespan in progeroid mice, and improves tissue homeostasis in older‏‎ (5 links)
  250. Inheritance of immune responsiveness, life span, and disease incidence in interline crosses of mice selected for high or low multispecific antibody production.‏‎ (5 links)

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