Agenda/Schedule
Click each agenda item's title for more information.
Evolving Chemical Systems
From Origins
Date/Time: November 13, 2019 - November 15, 2019
Organizers
David Baum (Univ. Wisconsin)
Oana Carja (Carnegie Mellon Univ.)
Chris Kempes (SFI)
Attendees
Mark Ditzler (NASA)
Emily Dolson (Michigan State Univ.)
Steven Frank (UC Irvine)
Samuel Levin (Oxford Univ.)
Omer Markovitch (Univ. Groningen)
Orit Peleg (UC Boulder)
Will Ratcliffe (Georgia Tech)
Sara Walker (Arizona State University)
Key Reviews[edit source]
None.
Reference Materials by Presenting Attendees[edit source]
David Baum (Univ. Wisconsin)[edit source]
A paper of mine related to this meeting (an easy read!)
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| The origin and early evolution of life in chemical composition space | David A. Baum | Journal of Theoretical Biology | 2018 | 0 | 13 | Download (Encrypted) |
| Selection and the Origin of Cells | David A. Baum | BioScience | 2015 | 0 | 5 | Download (Encrypted) |
| Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution | B. F. Intoy, A. Wynveen, J. W. Halley | Physical Review E | 2016 | 0 | 0 | Download (Encrypted) |
| Nonequilibrium steady states in a model for prebiotic evolution | A. Wynveen, I. Fedorov, J. W. Halley | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2014 | 0 | 5 | Download (Encrypted) |
Mark Ditzler (NASA)[edit source]
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Self-assembling amphiphilic molecules: Synthesis in simulated interstellar/precometary ices | Jason P. Dworkin, David W. Deamer, Scott A. Sandford, Louis J. Allamandola | Proceedings of the National Academy of Sciences of the United States of America | 2001 | 0 | 0 | Download |
Emily Dolson (Michigan State Univ.)[edit source]
The MODES Toolbox paper provides some background on what Open-Ended Evolution is and how to measure it.
The ecology and evolutionary computation paper provides more detail on the ecological networks I showed at the end of my talk.
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Ecological theory provides insights about evolutionary computation | Emily Dolson, Charles Ofria | GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion | 2018 | 0 | 2 | Download (Encrypted) |
| The MODES toolbox: Measurements of open-ended dynamics in evolving systems | Emily L. Dolson, Anya E. Vostinar, Michael J. Wiser, Charles Ofria | Artificial Life | 2019 | 0 | 3 | Download (Encrypted) |
Steven Frank (UC Irvine)[edit source]
Two most relevant paper of mine to this WG.
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Models of symbiosis | Steven A. Frank | American Naturalist | 1997 | 0 | 4 | Download (Encrypted) |
| Natural selection. III. Selection versus transmission and the levels of selection | S. A. Frank | Journal of Evolutionary Biology | 2012 | 0 | 2 | Download (Encrypted) |
Samuel Levin (Oxford Univ.)[edit source]
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| The evolution of cooperation in simple molecular replicators | Samuel R. Levin, Stuart A. West | Proceedings of the Royal Society B: Biological Sciences | 2017 | 0 | 2 | Download (Encrypted) |
| The social coevolution hypothesis for the origin of enzymatic cooperation | Samuel R. Levin, Sylvain Gandon, Stuart A. West | 0 | 23 | Download (Encrypted) |
Omer Markovitch (Univ. Groningen)[edit source]
1) Markovitch et al. 2018: Addressing the 'bridge' between chemistry and biology by trying to apply biological tool on a chemical system showing replication.
2) Markovitch & Krasnogor, 2018: Demonstrates how a network can be analyzed in order to extract all potential 'species', in a dynamical context.
3) Gross et al. 2014: Shows how compositional replicators could be cast in terms of Eigen's Quasispecies, hence in principle are evolvable in the same way a quasispecies is.
4) Sadownik et al. 2016; An experimental system based on multiple (two) types of building block showed not only the emergence of a variety of replicators but also that some of these replicators emerged with the help of other replicators.
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Chemical Heredity as Group Selection at the Molecular Level | Omer Markovitch, Olaf Witkowski, Nathaniel Virgo | Molecular | 2018 | 0 | 5 | Download (Encrypted) |
| Diversification of self-replicating molecules | Jan W. Sadownik, Elio Mattia, Piotr Nowak, Sijbren Otto | Nature Chemistry | 2016 | 0 | 6 | Download (Encrypted) |
| Predicting species emergence in simulated complex pre-biotic networks | Omer Markovitch, Natalio Krasnogor | PLoS ONE | 2018 | 0 | 4 | Download (Encrypted) |
| Quasispecies in population of compositional assemblies | Renan Gross, Itzhak Fouxon, Doron Lancet, Omer Markovitch | BMC Evolutionary Biology | 2014 | 0 | 1 | Download (Encrypted) |
Sara Walker (Arizona State University)[edit source]
Two most relevant paper of mine to this WG.
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Universal scaling across biochemical networks on Earth | Hyunju Kim, Harrison B. Smith, Cole Mathis, Jason Raymond, Sara I. Walker | Science Advances | 2019 | 0 | 3 | Download (Encrypted) |
| Environmental control programs the emergence of distinct functional ensembles from unconstrained chemical reactions | Andrew J. Surman, Marc Rodriguez-Garcia, Yousef M. Abul-Haija, Geoffrey J.T. Cooper, Piotr S. Gromski, Rebecca Turk-MacLeoda, Margaret Mullin, Cole Mathis, Sara I. Walker, Leroy Cronin | Proceedings of the National Academy of Sciences of the United States of America | 2019 | 0 | 1 | Download (Encrypted) |
Reference Materials by Non-presenting Attendees
General Meeting Reference Material[edit source]
| Title | Author name | Source name | Year | Citation count From Scopus. Refreshed every 5 days. | Page views | Related file |
|---|---|---|---|---|---|---|
| Selforganization of matter and the evolution of biological macromolecules | Manfred Eigen | Die Naturwissenschaften | 1971 | 0 | 9 | Download (Encrypted) |
| Chemical Evolution and the Evolutionary Definition of Life | Paul G. Higgs | Journal of Molecular Evolution | 2017 | 0 | 4 | Download (Encrypted) |
| The Structure of Autocatalytic Sets: Evolvability, Enablement, and Emergence | Wim Hordijk, Mike Steel, Stuart Kauffman | Acta Biotheoretica | 2012 | 0 | 3 | Download (Encrypted) |
| Real ribozymes suggest a relaxed error threshold | Ádám Kun, Mauro Santos, Eörs Szathmáry | Nature Genetics | 2005 | 0 | 2 | Download (Encrypted) |
| Compositional genomes: Prebiotic information transfer in mutually catalytic noncovalent assemblies | Daniel Segré, Dafna Ben-Eli, Doron Lancet | Proceedings of the National Academy of Sciences of the United States of America | 2000 | 0 | 3 | Download (Encrypted) |
| The major evolutionary transitions | Eörs Szathmáry, John Maynard Smith | Nature | 1995 | 0 | 6 | Download (Encrypted) |
| Multilevel selection in models of prebiotic evolution II: A direct comparison of compartmentalization and spatial self-organization | Nobuto Takeuchi, Paulien Hogeweg | PLoS Computational Biology | 2009 | 0 | 3 | Download (Encrypted) |
| Prevolutionary dynamics and the origin of evolution | Martin A. Nowak, Hisashi Ohtsuki | Proceedings of the National Academy of Sciences of the United States of America | 2008 | 0 | 5 | Download (Encrypted) |
| Lipid vesicles chaperone an encapsulated RNA aptamer | Ranajay Saha, Samuel Verbanic, Irene A. Chen | Nature Communications | 2018 | 0 | 4 | Download (Encrypted) |
Discussion Forums
readapidenied, You need read permission to use this module., See https://centre.santafe.edu/origins-private/w/api.php for API usage. Subscribe to the mediawiki-api-announce mailing list at <https://lists.wikimedia.org/mailman/listinfo/mediawiki-api-announce> for notice of API deprecations and breaking changes.
