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From Thermodynamics of Computation
- 119th Statistical Mechanics Conference
- APS March Meeting 2019
- ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity
- ATP-dependent mechanics of red blood cells
- ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light
- A "fast growth" method of computing free energy differences
- A (sub)graph isomorphism algorithm for matching large graphs
- A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling
- A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic
- A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory
- A Cost / Speed / Reliability Trade-off in Erasing a Bit
- A DNA-fuelled molecular machine made of DNA
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes
- A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics
- A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering
- A Kilobit Special Number Field Sieve Factorization
- A Map of the Interactome Network of the Metazoan C. elegans
- A Nonequilibrium Extension of the Clausius Heat Theorem
- A Note on Bennett’s Time-Space Tradeoff for Reversible Computation
- A Parallel Repetition Theorem
- A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes
- A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs
- A Sampling of the Yeast Proteome
- A Simple Histone Code Opens Many Paths to Epigenetics
- A Simple Model of Optimal Population Coding for Sensory Systems
- A Survey of Techniques for Approximate Computing
- A bound particle coupled to two thermostats
- A complete problem for statistical zero knowledge
- A complexity measure for selective matching of signals by the brain
- A complexity theoretic approach to randomness
- A cost/speed/reliability tradeoff to erasing
- A fast and elitist multiobjective genetic algorithm: NSGA-II
- A fast quantum mechanical algorithm for database search
- A field-theoretic approach to non-equilibrium work identities
- A fluctuation theorem for currents and non-linear response coefficients
- A fluctuation theorem for non-equilibrium relaxational systems driven by external forces
- A general framework for non-equilibrium phenomena: The master equation and its formal consequences
- A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
- A general model for ontogenetic growth
- A general model for the origin of allometric scaling laws in biology
- A general model for the structure and allometry of plant vascular systems
- A general purpose RNA-cleaving DNA enzyme
- A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation
- A generalized integral fluctuation theorem for general jump processes
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
- A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb
- A master equation description of local fluctuations
- A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium
- A mathematical theory of communication
- A measure for brain complexity: relating functional segregation and integration in the nervous system.
- A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy
- A model for transmission of the H3K27me3 epigenetic mark
- A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli
- A molecular information ratchet
- A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares
- A new notation for quantum mechanics
- A new polynomial-time algorithm for linear programming
- A note on monte carlo primality tests and algorithmic information theory
- A note on the Jarzynski equality
- A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries
- A possible classification of nonequilibrium steady states
- A quantitative analysis of sniffing strategies in rats performing odor detection tasks
- A quantitative comparison of sRNA-based and protein-based gene regulation
- A quantitative estimation of the global translational activity in logarithmically growing yeast cells
- A reconfigurable stochastic architecture for highly reliable computing
- A rigorous derivation of the chemical master equation
- A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats.
- A simple coding procedure enhances a neuron’s information capacity
- A simple population protocol for fast robust approximate majority
- A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions
- A simple theory of motor protein kinetics and energetics. II
- A small world of neuronal synchrony
- A spectral transform approach to stochastic circuits
- A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms
- A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic
- A synthetic oscillatory network of transcriptional regulators
- A systems perspective on early olfactory coding
- A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension
- A tension-based theory of morphogenesis and compact wiring in the central nervous system
- A test of metabolically efficient coding in the retina
- A theory of the learnable
- A universal scaling law between gray matter and white matter of cerebral cortex.
- A yeast protein similar to bacterial two-component regulators.
- Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis
- Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease
- Accuracy of direct gradient sensing by cell-surface receptors
- Active membrane fluctuations studied by micropipet aspiration
- Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments
- Addressing the wicked problem of quality in higher education: theoretical approaches and implications
- Adipose tissue in human infancy and childhood: An evolutionary perspective
- Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics
- Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation
- Aerobic glycolysis in the human brain is associated with development and neotenous gene expression
- Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance
- Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI
- Age-related changes in modular organization of human brain functional networks
- Alec Boyd
- Algebraic methods in the theory of lower bounds for Boolean circuit complexity
- Algorithmic Self-Assembly of DNA Sierpinski Triangles
- Algorithmic randomness and physical entropy
- Alternative splicing in the nervous system: An emerging source of diversity and regulation
- Amorphous computing
- Amplification and adaptation in regulatory and sensory systems
- An Energy Budget for Signaling in the Grey Matter of the Brain
- An Energy Budget for the Olfactory Glomerulus
- An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation
- An Introduction to Kolmogorov Complexity and Its Applications
- An O(log n log log n) Space Algorithm for Undirected st-connectivity
- An amplified sensitivity arising from covalent modification in biological systems.
- An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions
- An analysis of selected computer interchange color spaces
- An analytical solution to the kinetics of breakable filament assembly
- An architecture for fault-tolerant computation with stochastic logic
- An autonomous and reversible Maxwell's demon
- An effect of DNA sequence on nucleosome occupancy and removal
- An efficient 10GBASE-T ethernet LDPC decoder design with low error floors
- An efficient graph theory based method to identify every minimal reaction set in a metabolic network
- An estimate of the total DNA in the biosphere
- An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions
- An experimental test of the Jarzynski equality in a mechanical experiment
- An information-theoretic equality implying the Jarzynski relation
- An information integration theory of consciousness
- An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle
- An informational process based on reversible universal cellular automata
- An intermediate level of abstraction for computational systems chemistry
- An introduction to population protocols
- An introduction to thermodynamics and statistical mechanics
- An update on the nonequilibrium linear response
- Analog Computation by DNA Strand Displacement Circuits
- Analog Versus Digital: Extrapolating from Electronics to Neurobiology
- Analog synthetic biology
- Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits
- Analyzing friction forces with the Jarzynski equality
- Analyzing molecular reaction networks: From pathways to chemical organizations
- Andre Barato
- Andy Adamatzky
- Anne Condon
- Another proof of Gell-Mann and Low's theorem
- Application-level correctness and its impact on fault tolerance
- Application of Boolean Algebra to Switching Circuit Design and to Error Detection
- Application of importance sampling to the computation of large deviations in nonequilibrium processes
- ApproxMA: Approximate Memory Access for Dynamic Precision Scaling
- Approximate computing: An emerging paradigm for energy-efficient design
- Approximate counting, uniform generation and rapidly mixing Markov chains
- Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network
- Are Recursion Theoretic Arguments Useful in Complexity Theory?
- Argonaute proteins couple chromatin silencing to alternative splicing
- Artemy Kolchinsky
- Article for analog vector algebra computation
- Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements
- Astrocytes Couple Synaptic Activity to Glucose Utilization in the Brain.
- Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution
- Asymmetrically modified nucleosomes
- Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic
- Asymptotics of work distributions in nonequilibrium systems
- Asynchronous computation with molecular reactions
- Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study
- Average Case Complete Problems
- Avinash Lingamneni
- Aviv Bergman
- Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation
- BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study
- BPP and the polynomial hierarchy
- BRAIN WORK AND BRAIN IMAGING
- Bacterial chemoreceptors: high-performance signaling in networked arrays
- Bacterial computing with engineered populations
- Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states
- Basal Metabolic Rate in Man
- Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise
- Bayesian integration in sensorimotor learning
- Beilstein Bozen Symposium
- Benjamin Machta
- Best-effort computing: Re-thinking parallel software and hardware
- Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome
- Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
- Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?
- Bidirectional single-electron counting and the fluctuation theorem
- Binary Multiplication with PN Sequences
- Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer.
- Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1)
- Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors
- Biological solutions to transport network design
- Biomolecules under mechanical force
- Biorthogonal quantum mechanics
- Blake Pollard
- Body Composition and Energy Needs during Growth
- Body size and metabolic rate.
- Bona fide stochastic resonance: A view point from stochastic energetics
- Boundary layers in stochastic thermodynamics
- Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines
- Brain Graphs: Graphical Models of the Human Brain Connectome
- Brain anatomical network and intelligence
- Brain and body oxygen requirements of Gnathonemus petersii, a fish with an exceptionally large brain
- Brain growth, life history, and cognition in primate and human evolution
- Breaking DES Using a Molecular Computer
- Broadband Criticality of Human Brain Network Synchronization
- Broken symmetries and the masses of gauge bosons
- Brownian motion: A paradigm of soft matter and biological physics
- Brownian motors: Noisy transport far from equilibrium
- Bruno Loff
- Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium
- Building programmable jigsaw puzzles with RNA
- CNS energy metabolism as related to function
- CREW PRAMs and Decision Trees
- CURRENT OPINION IN STRUCTURAL BIOLOGY
- Calcium, the two-faced messenger of olfactory transduction and adaptation
- Calcium signalling and regulation in olfactory neurons
- Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality
- Calculating potentials of mean force from steered molecular dynamics simulations.
- Calculating source line level energy information for Android applications
- Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host
- Carl T. Bergstrom
- Carlton M. Caves
- Cell Type-Specific Tuning of Hippocampal Interneuron Firing during Gamma Oscillations In Vivo
- Cellular energy utilization and molecular origin of standard metabolic rate in mammals
- Cellular stoichiometry of the components of the chemotaxis signaling complex
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing
- Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation
- Cerebellar LTD and Pattern Recognition by Purkinje Cells
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
- Challenges for complexity measures: A perspective from social dynamics and collective social computation
- Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights
- Channel noise in neurons
- Characterization of Minimum Error Linear Coding with Sensory and Neural Noise
- Characterization of the RNA content of chromatin
- Characterization of the anterior cingulate's role in the at-risk mental state using graph theory
- Characterizing plastic depinning dynamics with the fluctuation theorem
- Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life.
- Chemical Reaction Networks for Computing Polynomials
- Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms
- Chemical implementation of finite-state machines
- Chemical implementation of neural networks and Turing machines
- Chemical kinetics is turing universal
- Chemical reaction network theory for in-silico biologists
- Chemical sensing by nonequilibrium cooperative receptors
- Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions
- Chemotaxis in Escherichia coli analysed by three-dimensional tracking
- Childhood and the evolution of the human life course: An Introduction
- Chris Kempes
- Christian van den Broeck
- Christoph Flamm
- Christopher Jarzynski
- Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription
- Chromatin and epigenetic regulation of pre-mrna processing
- Chromatin computation
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels
- Chromatin organization marks exon-intron structure
- Chromatin proteins: Key responders to stress
- Chromatin structure and the inheritance of epigenetic information
- Circulation and Energy Metabolism of the Brain.
- Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise
- Classical and quantum fluctuation theorems for heat exchange
- Classical and quantum limitations on energy consumption in computation
- Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality
- Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty
- Closed-loop control strategy with improved current for a flashing ratchet
- Coding Efficiency and the Metabolic Cost of Sensory and Neural Information
- Coding of Odors by a Receptor Repertoire
- Cognitive Computing - Merging Concepts with Hardware
- Cognitive Effort Drives Workspace Configuration of Human Brain Functional Networks
- Cognitive fitness of cost-efficient brain functional networks
- Collective dynamics of 'small-world' networks
- Colloquium: The physics of Maxwell's demon and information
- Combinatorial Problems and Exercises
- Combinatorial complexity in chromatin structure and function: Revisiting the histone code
- Combinatorial complexity of pathway analysis in metabolic networks.
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums
- Combinatorial readout of dual histone modifications by paired chromatin-associated modules
- Combined analog and action potential coding in hippocampal mossy fibers
- Comment on "Failure of the work-Hamiltonian connection for free-energy calculations" by Jose M. G. Vilar and J. Miguel Rubi
- Communication in neuronal networks
- Communication lower bounds using directional derivatives
- Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories?
- Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid
- Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process
- Comparison of far-from-equilibrium work relations
- Comparison of work fluctuation relations
- Compartmental organization of the olfactory bulb glomerulus
- Compendium of the Foundations of Classical Statistical Physics
- Compiler optimization on instruction scheduling for low power
- Complex Extension of Quantum Mechanics
- Complex and detailed balancing of chemical reaction networks revisited
- Complex brain networks: graph theoretical analysis of structural and functional systems
- Complex network measures of brain connectivity: Uses and interpretations
- Complex parameter landscape for a complex neuron model
- Complexity, entropy and the physics of information
- Component-placement optimization in the brain
- Computation in networks of passively mobile finite-state sensors
- Computation on stochastic bit streams digital image processing case studies
- Computation with finite stochastic chemical reaction networks
- Computational Complexity: A Modern Approach
- Computational Complexity of Probabilistic Turing Machines
- Computational complexity: a modern approach
- Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
- Computational design of nucleic acid feedback control circuits
- Computational limits to binary genes.
- Computational selection of nucleic acid biosensors via a slip structure model
- Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury
- Computer simulation of Feynman's ratchet and pawl system
- Computers and Intractability: a guide to NP-completeness
- Computing the optimal protocol for finite-time processes in stochastic thermodynamics
- Computing with Noisy Information
- Conformational spread in a ring of proteins: A stochastic approach to allostery
- Connectivity-driven white matter scaling and folding in primate cerebral cortex
- Connectivity optimization and the positioning of cortical areas
- Consciousness as integrated information: A provisional manifesto
- Consensus paper: The cerebellum's role in movement and cognition
- Conservative logic
- Constrained maximal power in small engines
- Construction and optimization of a quantum analog of the Carnot cycle
- Construction of an in vitro bistable circuit from synthetic transcriptional switches
- Continuous time controllers using digital programmable devices
- Control of DNA strand displacement kinetics using toehold exchange
- Convergence in the olfactory system: quantitative aspects of odour sensitivity
- Cooling classical particles with a microcanonical szilard engine
- Cooperative binding of effectors by an allosteric ribozyme.
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain
- Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors
- Cooperativity, sensitivity, and noise in biochemical signaling
- Coordination languages and their significance
- Correcting errors beyond the Guruswami-Sudan radius in polynomial time
- Correlated evolution of nearby residues in drosophilid proteins
- Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver.
- Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis
- Cortical GABA Interneurons in Neurovascular Coupling: Relays for Subcortical Vasoactive Pathways
- Cortical Hubs Revealed by Intrinsic Functional Connectivity: Mapping, Assessment of Stability, and Relation to Alzheimer's Disease
- Cosmological experiments in superfluid helium?
- Costs of encephalization: the energy trade-off hypothesis tested on birds
- Could information theory provide an ecological theory of sensory processing?
- Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport
- Covalent modifications of histones during mitosis and meiosis
- Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis.
- Covariation of residues in the homeodomain sequence family
- Criticism of Feynman’s analysis of the ratchet as an engine
- Crowding Effects on Diffusion in Solutions and Cells
- Cryptographic Limitations on Learning Boolean Formulae and Finite Automata
- Cube v4: From performance report explorer to performance analysis tool
- Curie's principle
- Current, maximum power and optimized efficiency of a Brownian heat engine
- Current trends in finite-time thermodynamics
- Cybernetics : Control and Communication in the Animal and the Machine --2nd. ed
- DNA COMPUTING
- DNA as a universal substrate for chemical kinetics (Extended Abstract)
- Darwinian demons, evolutionary complexity, and information maximization
- Data Center Efficiency Assessment
