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- A "fast growth" method of computing free energy differences ,
- Luigi P. Cordella, Pasquale Foggia, Carlo Sansone, Mario Vento A (sub)graph isomorphism algorithm for matching large graphs IEEE Transactions on Pattern Analysis and Machine Intelligence 26, 1367-1372 (2004)
- Kevin J. Nowka, Gary D. Carpenter, Eric W. MacDonald, Hung C. Ngo, Bishop C. Brock, Koji I. Ishii, Tuyet Y. Nguyen, Jeffrey L. Burns A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling IEEE Journal of Solid-State Circuits 37, 1441-1447 (2002)
- A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic ,
- David J. Katz, T. Matthew Edwards, Valerie Reinke, William G. Kelly A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory Cell 137, 308-320 (2009)
- Manoj Gopalkrishnan A Cost / Speed / Reliability Trade-off in Erasing a Bit , (2015)
- Bernard Yurke, Andrew J. Turberfield, Allen P. Mills, Friedrich C. Simmel, Jennifer L. Neumann A DNA-fuelled molecular machine made of DNA Nature 406, 605-608 (2000)
- A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics ,
- Andre Cardoso Barato, Raphaël Chetrite, Haye Hinrichsen, David Mukamel A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes Journal of Statistical Physics 146, 294-313 (2012)
- Andrea Arcuri, Lionel Briand A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering Software Testing Verification and Reliability 24, 219-250 (2014)
- A Kilobit Special Number Field Sieve Factorization ,
- Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre Olivier Vidalain, Jing Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander v. Van Den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal A Map of the Interactome Network of the Metazoan C. elegans Science 303, 540-543 (2004)
- Christian Maes, Karel Netočný A Nonequilibrium Extension of the Clausius Heat Theorem Journal of Statistical Physics 154, 188-203 (2014)
- A Note on Bennett’s Time-Space Tradeoff for Reversible Computation ,
- A Parallel Repetition Theorem ,
- ... A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes ,
- A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs ,
- A Sampling of the Yeast Proteome ,
- Kim Sneppen, Ian B. Dodd A Simple Histone Code Opens Many Paths to Epigenetics PLoS Computational Biology 8, (2012)
- Eizaburo Doi, Michael S. Lewicki A Simple Model of Optimal Population Coding for Sensory Systems PLoS Computational Biology 10, (2014)
- A Survey of Techniques for Approximate Computing ,
- Hans C. Fogedby, Alberto Imparato A bound particle coupled to two thermostats Journal of Statistical Mechanics: Theory and Experiment 2011, (2011)
- A complete problem for statistical zero knowledge ,
- A complexity measure for selective matching of signals by the brain ,
- A complexity theoretic approach to randomness ,
- Manoj Gopalkrishnan A cost/speed/reliability tradeoff to erasing 9252, 192-201 (2015)
- Kalyanmoy Deb, Amrit Pratap, Sameer Agarwal, T. Meyarivan A fast and elitist multiobjective genetic algorithm: NSGA-II IEEE Transactions on Evolutionary Computation 6, 182-197 (2002)
- A fast quantum mechanical algorithm for database search ,
- Kirone Mallick, Moshe Moshe, Henri Orland A field-theoretic approach to non-equilibrium work identities Journal of Physics A: Mathematical and Theoretical 44, (2011)
- David Andrieux, Pierre Gaspard A fluctuation theorem for currents and non-linear response coefficients Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Francesco Zamponi, Federico Bonetto, Leticia F. Cugliandolo, Jorge Kurchan A fluctuation theorem for non-equilibrium relaxational systems driven by external forces Journal of Statistical Mechanics: Theory and Experiment , 315-365 (2005)
- Bernard Gaveau, L. S. Schulman A general framework for non-equilibrium phenomena: The master equation and its formal consequences Physics Letters, Section A: General, Atomic and Solid State Physics 229, 347-353 (1997)
- Daniel T. Gillespie A general method for numerically simulating the stochastic time evolution of coupled chemical reactions Journal of Computational Physics 22, 403-434 (1976)
- Geoffrey B. West, James H. Brown, Brian J. Enquist A general model for ontogenetic growth Nature 413, 628-631 (2001)
- A general model for the origin of allometric scaling laws in biology ,
- Geoffrey B. West, James H. Brown, Brian J. Enquist A general model for the structure and allometry of plant vascular systems Nature 400, 664-667 (1999)
- A general purpose RNA-cleaving DNA enzyme ,
- Stefan Schuster, Ronny Schuster A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation Journal of Mathematical Chemistry 3, 25-42 (1989)
- Fei Liu, Yu Pin Luo, Ming Chang Huang, Zhong Can Ou-Yang A generalized integral fluctuation theorem for general jump processes Journal of Physics A: Mathematical and Theoretical 42, (2009)
- Shodhan Rao, Arjan van der Schaft, Bayu Jayawardhana A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks Journal of Mathematical Chemistry 51, 2401-2422 (2013)
- Ana Raquel Pengelly, Ömer Copur, Herbert Jäckle, Alf Herzig, Jürg Müller A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb Science 339, 698-699 (2013)
- M. Malek-Mansour, G. Nicolis A master equation description of local fluctuations Journal of Statistical Physics 13, 197-217 (1975)
- A. E. Allahverdyan, Th M. Nieuwenhuizen A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium Physica A: Statistical Mechanics and its Applications 305, 542-552 (2002)
- A mathematical theory of communication ,
- A measure for brain complexity: relating functional segregation and integration in the nervous system. ,
- David M. Cohen, Jingna Wei, E. O'Brian Smith, Xiaolian Gao, Michael J. Quast, Louis Sokoloff A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy Magnetic Resonance in Medicine 48, 1063-1067 (2002)
- Klaus H. Hansen, Adrian P. Bracken, Diego Pasini, Nikolaj Dietrich, Simmi S. Gehani, Astrid Monrad, Juri Rappsilber, Mads Lerdrup, Kristian Helin A model for transmission of the H3K27me3 epigenetic mark Nature Cell Biology 10, 1291-1300 (2008)
- Thomas S. Shimizu, Yuhai Tu, Howard C. Berg A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli Molecular Systems Biology 6, (2010)
- Viviana Serreli, Chin Fa Lee, Euan R. Kay, David A. Leigh A molecular information ratchet Nature 445, 523-527 (2007)
- A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares ,
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- Gregory J. Chaitin, Jacob T. Schwartz A note on monte carlo primality tests and algorithmic information theory Communications on Pure and Applied Mathematics 31, 521-527 (1978)
- A note on the Jarzynski equality ,
- A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries ,
- B. Schmittmann, R. K.P. Zia A possible classification of nonequilibrium steady states Journal of Physics A: Mathematical and General 39, (2006)
- Steven L. Youngentob, Maxwell M. Mozell, Paul R. Sheehe, David E. Hornung A quantitative analysis of sniffing strategies in rats performing odor detection tasks Physiology and Behavior 41, 59-69 (1987)
- Pankaj Mehta, Sidhartha Goyal, Ned S. Wingreen A quantitative comparison of sRNA-based and protein-based gene regulation Molecular Systems Biology 4, (2008)
- Tobias von der Haar A quantitative estimation of the global translational activity in logarithmically growing yeast cells BMC Systems Biology 2, (2008)
- A reconfigurable stochastic architecture for highly reliable computing ,
- Daniel T. Gillespie A rigorous derivation of the chemical master equation Physica A: Statistical Mechanics and its Applications 188, 404-425 (1992)
- A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats. ,
- Simon Laughlin A simple coding procedure enhances a neuron’s information capacity Zeitschrift fur Naturforschung - Section C Journal of Biosciences 36, 910-912 (1981)
- Dana Angluin, James Aspnes, David Eisenstat A simple population protocol for fast robust approximate majority Distributed Computing 21, 87-102 (2008)
- Marcus Kaiser, Claus C. Hilgetag, Arjen Van Ooyen A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions Cerebral Cortex 19, 3001-3010 (2009)
- Hong Qian A simple theory of motor protein kinetics and energetics. II Biophysical Chemistry 83, 35-43 (2000)
- Shan Yu, Debin Huang, Wolf Singer, Danko Nikolić A small world of neuronal synchrony Cerebral Cortex 18, 2891-2901 (2008)
- Armin Alaghi, John P. Hayes A spectral transform approach to stochastic circuits Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors , 315-321 (2012)
- Peng Li, Weikang Qian, David J. Lilja A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors , 303-308 (2012)
- Da Zhang, Hui Li A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms IEEE Transactions on Industrial Electronics 55, 551-561 (2008)
- Michael B. Elowitz, Stanislas Leibier A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338 (2000)
- Gilles Laurent A systems perspective on early olfactory coding Science 286, 723-728 (1999)
- C. Chatelain A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension Journal of Statistical Mechanics: Theory and Experiment , (2007)
- David C. Van Essen A tension-based theory of morphogenesis and compact wiring in the central nervous system Nature 385, 313-318 (1997)
- Vijay Balasubramanian, Michael J. Berry A test of metabolically efficient coding in the retina Network: Computation in Neural Systems 13, 531-552 (2002)
- A theory of the learnable ,
- A universal scaling law between gray matter and white matter of cerebral cortex. ,
- A yeast protein similar to bacterial two-component regulators. ,
- ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity ,
- Haruhisa Okawa, Alapakkam P. Sampath, Simon B. Laughlin, Gordon L. Fain ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light Current Biology 18, 1917-1921 (2008)
- ATP-dependent mechanics of red blood cells ,
- Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis ,
- Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease ,
- Robert G. Endres, Ned S. Wingreen Accuracy of direct gradient sensing by cell-surface receptors Progress in Biophysics and Molecular Biology 100, 33-39 (2009)
- J. B. Manneville, P. Bassereau, S. Ramaswamy, J. Prost Active membrane fluctuations studied by micropipet aspiration Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 64, 10 (2001)
- Ganhui Lan, Sonja Schulmeister, Victor Sourjik, Yuhai Tu Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments Molecular Systems Biology 7, (2011)
- ... Addressing the wicked problem of quality in higher education: theoretical approaches and implications ,
- Christopher W. Kuzawa Adipose tissue in human infancy and childhood: An evolutionary perspective Yearbook of Physical Anthropology 41, 177-209 (1998)
- Pinar Korkmaz, Bilge E.S. Akgul, Krishna V. Palem, Lakshmi N. Chakrapani Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics Japanese Journal of Applied Physics, Part 1: Regular Papers and Short Notes and Review Papers 45, 3307-3316 (2006)
- Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation ,
- Manu S. Goyal, Michael Hawrylycz, Jeremy A. Miller, Abraham Z. Snyder, Marcus E. Raichle Aerobic glycolysis in the human brain is associated with development and neotenous gene expression Cell Metabolism 19, 49-57 (2014)
- Amy L. Bauernfeind, Sarah K. Barks, Tetyana Duka, Lawrence I. Grossman, Patrick R. Hof, Chet C. Sherwood Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance Brain Structure and Function 219, 1149-1167 (2014)
- Zhang J. Chen, Yong He, Pedro Rosa-Neto, Gaolang Gong, Alan C. Evans Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI NeuroImage 56, 235-245 (2011)
- David Meunier, Sophie Achard, Alexa Morcom, Ed Bullmore Age-related changes in modular organization of human brain functional networks NeuroImage 44, 715-723 (2009)
- Algebraic methods in the theory of lower bounds for Boolean circuit complexity ,
- Algorithmic Self-Assembly of DNA Sierpinski Triangles ,
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- Christopher J. Lee, Kris Irizarry Alternative splicing in the nervous system: An emerging source of diversity and regulation Biological Psychiatry 54, 771-776 (2003)
- Hal Abelson, Jacob Beal, Gerald Jay Sussman Amorphous computing Computational Complexity: Theory, Techniques, and Applications 9781461418009, 147-160 (2012)
- Amplification and adaptation in regulatory and sensory systems ,
- An Energy Budget for Signaling in the Grey Matter of the Brain ,
- An Energy Budget for the Olfactory Glomerulus ,
- Katsuhiko Sato An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation Journal of the Physical Society of Japan 71, 1065-1066 (2002)
- Ming Li, PMB Vitanyi An Introduction to Kolmogorov Complexity and Its Applications , (2008)
- An O(log n log log n) Space Algorithm for Undirected st-connectivity ,
- An amplified sensitivity arising from covalent modification in biological systems. ,
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- An analysis of selected computer interchange color spaces ,
- Christopher A. Waudby, Glyn L. Devlin, Adriano Aguzzi, Michele Vendruscolo, Eugene M. Terentjev, Mark E. Welland, Christopher M. Dobson, Tuomas P.J. Knowles, Samuel I.A. Cohen An analytical solution to the kinetics of breakable filament assembly Science 326, 1533-1537 (2009)
- Weikang Qian, Xin Li, Marc D. Riedel, Kia Bazargan, David J. Lilja An architecture for fault-tolerant computation with stochastic logic IEEE Transactions on Computers 60, 93-105 (2011)
- Udo Seifert, A. C. Barato An autonomous and reversible Maxwell's demon EPL 101, (2013)
- Xin Wang, Gene O. Bryant, Monique Floer, Dan Spagna, Mark Ptashne An effect of DNA sequence on nucleosome occupancy and removal Nature Structural and Molecular Biology 18, 507-509 (2011)
- Zhengya Zhang, Venkat Anantharam, Martin J. Wainwright, Borivoje Nikolić An efficient 10GBASE-T ethernet LDPC decoder design with low error floors IEEE Journal of Solid-State Circuits 45, 843-855 (2010)
- Sudhakar Jonnalagadda, Rajagopalan Srinivasan An efficient graph theory based method to identify every minimal reaction set in a metabolic network BMC Systems Biology 8, (2014)
- Hanna K.E. Landenmark, Duncan H. Forgan, Charles S. Cockell An estimate of the total DNA in the biosphere PLoS Biology 13, 1-10 (2015)
- Donna G. Blackmond An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions Angewandte Chemie - International Edition 48, 386-390 (2009)
- F. Douarche, S. Ciliberto, A. Petrosyan, I. Rabbiosi An experimental test of the Jarzynski equality in a mechanical experiment Europhysics Letters 70, 593-599 (2005)
- Giulio Tononi An information integration theory of consciousness BMC Neuroscience 5, (2004)
- Hong Qian, Sumit Roy An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle IEEE Transactions on Nanobioscience 11, 289-295 (2012)
- Vlatko Vedral An information-theoretic equality implying the Jarzynski relation Journal of Physics A: Mathematical and Theoretical 45, (2012)
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- Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler An intermediate level of abstraction for computational systems chemistry IEEE/ACM Transactions on Computational Biology and Bioinformatics 16, 510-523 (2019)
- James Aspnes, Eric Ruppert An introduction to population protocols Middleware for Network Eccentric and Mobile Applications , 97-120 (2009)
- An introduction to thermodynamics and statistical mechanics ,
- M. Baiesi, C. Maes An update on the nonequilibrium linear response New Journal of Physics 15, (2013)
- Tianqi Song, Sudhanshu Garg, Reem Mokhtar, Hieu Bui, John Reif Analog Computation by DNA Strand Displacement Circuits ACS Synthetic Biology 5, 898-912 (2016)
- Analog Versus Digital: Extrapolating from Electronics to Neurobiology ,
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- Christoph Kaleta, Florian Centler, Peter Dittrich Analyzing molecular reaction networks: From pathways to chemical organizations Molecular Biotechnology 34, 117-123 (2006)
- Luca Guido Molinari Another proof of Gell-Mann and Low's theorem Journal of Mathematical Physics 48, (2007)
- Application of Boolean Algebra to Switching Circuit Design and to Error Detection ,
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- Arkadiusz Chworos, Isil Severcan, Alexey Y. Koyfman, Patrick Weinkam, Emin Oroudjev, Helen G. Hansma, Luc Jaeger Building programmable jigsaw puzzles with RNA Science 306, 2068-2072 (2004)
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- CREW PRAMs and Decision Trees ,
- CURRENT OPINION IN STRUCTURAL BIOLOGY ,
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- Matthew D. Young, Tracy A. Willson, Matthew J. Wakefield, Evelyn Trounson, Douglas J. Hilton, Marnie E. Blewitt, Alicia Oshlack, Ian J. Majewski ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity Nucleic Acids Research 39, 7415-7427 (2011)
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