Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

Udo Seifert

From Thermodynamics of Computation

Biography: Udo Seifert is physicist working on stochastic thermodynamics and information processing in biology.

Field(s) of Research: Chemical Reaction Networks, General Non-equilibrium Statistical Physics, Stochastic Thermodynamics, Thermodynamics of Single Cells, Naturally Occurring Biological Computation

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Reference Materials

  1. An autonomous and reversible Maxwell's demon
  2. Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories?
  3. Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers
  4. Distribution of work in isothermal nonequilibrium processes
  5. Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension
  6. Efficiency at maximum power: An analytically solvable model for stochastic heat engines
  7. Efficiency of autonomous soft nanomachines at maximum power
  8. Efficiency of cellular information processing
  9. Efficiency of molecular motors at maximum power
  10. Einstein relation generalized to nonequilibrium
  11. Entropy production along a stochastic trajectory and an integral fluctuation theorem
  12. Entropy production for mechanically or chemically driven biomolecules
  13. Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states
  14. Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates
  15. Extended fluctuation-dissipation theorem for soft matter in stationary flow
  16. Extracting work from a single heat bath through feedback
  17. Fluctuation theorem for a single enzym or molecular motor
  18. Fluctuation theorem for birth-death or chemical master equations with time-dependent rates
  19. Generalized einstein or green-kubo relations for active biomolecular transport
  20. Information-theoretic versus thermodynamic entropy production in autonomous sensory networks
  21. Integral fluctuation theorem for the housekeeping heat
  22. Large deviation function for entropy production in driven one-dimensional systems
  23. Measurement of stochastic entropy production
  24. Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases
  25. Nonexistence of classical diamagnetism and nonequilibrium fluctuation theorems for charged particles on a curved surface
  26. Optimal finite-time processes in stochastic thermodynamics
  27. Optimal potentials for temperature ratchets
  28. Optimal protocols for minimal work processes in underdamped stochastic thermodynamics
  29. Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables
  30. Role of external flow and frame invariance in stochastic thermodynamics
  31. Role of hidden slow degrees of freedom in the fluctuation theorem
  32. Stochastic thermodynamics of bipartite systems: Transfer entropy inequalities and a Maxwell's demon interpretation
  33. Stochastic thermodynamics of chemical reaction networks
  34. Stochastic thermodynamics of single enzymes and molecular motors
  35. Stochastic thermodynamics with information reservoirs
  36. Stochastic thermodynamics, fluctuation theorems and molecular machines
  37. The Jarzynski relation, fluctuation theorems, and stochastic thermodynamics for non-Markovian processes
  38. Thermodynamic Uncertainty Relation for Biomolecular Processes
  39. Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential
  40. Thermodynamics of genuine nonequilibrium states under feedback control
  41. Unifying three perspectives on information processing in stochastic thermodynamics