Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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From Thermodynamics of Computation

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M
Making molecular machines work +
1  +
T
The human connectome: A structural description of the human brain +
1  +
S
Soft computing: the convergence of emerging reasoning technologies +
1  +
I
Information theory in molecular biology +
1  +
W
Why do female primates have such long lifespans and so few babies? or Life in the slow lane +
1  +
T
The energy expansions of evolution +
1  +
D
Distributed hierarchical processing in the primate cerebral cortex +
1  +
N
Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity +
10  +
E
Experience-dependent rescaling of entorhinal grids +
10  +
U
Universal features in the energetics of symmetry breaking +
10  +
T
Thermodynamic Costs of Information Processing in Sensory Adaptation +
10  +
E
Evolutionary tradeoffs in cellular composition across diverse bacteria +
10  +
A
A model for transmission of the H3K27me3 epigenetic mark +
10  +
P
Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease +
10  +
T
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network +
10  +
A
A Simple Model of Optimal Population Coding for Sensory Systems +
10  +
S
Symbiotic relationship between brain structure and dynamics +
10  +
N
Nucleosome positioning and gene regulation: Advances through genomics +
10  +
T
The second wave of synthetic biology: From modules to systems +
10  +
The WUS homeobox-containing (WOX) protein family +
10  +
C
Chromatin proteins: Key responders to stress +
10  +
S
Strand algebras for DNA computing +
10  +
F
Failure of the work-hamiltonian connection for free-energy calculations +
100  +
R
Role of external flow and frame invariance in stochastic thermodynamics +
100  +
O
Optimized free energies from bidirectional single-molecule force spectroscopy +
100  +
R
Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states +
100  +
C
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport +
100  +
E
Escorted free energy simulations: Improving convergence by reducing dissipation +
100  +
R
Revision of Dietary Reference Intakes for energy in preschool-age children +
100  +
C
Cooperativity, sensitivity, and noise in biochemical signaling +
100  +
A
Accuracy of direct gradient sensing by cell-surface receptors +
100  +
R
Receptor noise and directional sensing in eukaryotic chemotaxis +
100  +
I
Invariant quantities in shear flow +
101  +
L
Length of time's arrow +
101  +
R
Realization of a feedback controlled flashing ratchet +
101  +
D
Differential Landauer's principle +
101  +
A
An autonomous and reversible Maxwell's demon +
101  +
M
Memory erasure in small systems +
102  +
Minimal energy cost for thermodynamic information processing: Measurement and information erasure +
102  +
Mutual information between input and output trajectories of biochemical networks +
102  +
F
Fluctuation theorem for arbitrary open quantum systems +
102  +
H
Heterogeneity and Efficiency in the Brain +
103  +
N
Nonequilibrium steady-state fluctuations in actively cooled resonators +
103  +
E
Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State +
103  +
D
Dynamical reconnection and stability constraints on cortical network architecture +
103  +
R
Role of spatial averaging in the precision of gene expression patterns +
103  +
C
Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury +
103  +
M
Maximum likelihood and the single receptor +
103  +
G
Generalized fluctuation-dissipation theorem for steady-state systems +
103  +
D
Dependence of the fluctuation-Dissipation temperature on the choice of observable +
103  +
N
Nonequilibrium energetics of a single F1-ATPase molecule +
104  +
E
Entropy production of cyclic population dynamics +
104  +
F
Fluctuation theorem applied to F1-ATPase +
104  +
G
Generalized einstein or green-kubo relations for active biomolecular transport +
104  +
H
Heat conduction in a three dimensional anharmonic crystal +
104  +
O
On r- and K-Selection +
104  +
G
Generalized Jarzynski equality under nonequilibrium feedback control +
104  +
L
Limits of sensing temporal concentration changes by single cells +
104  +
C
Cooling classical particles with a microcanonical szilard engine +
104  +
S
Stochastic thermodynamics and sustainable efficiency in work production +
105  +
N
Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases +
105  +
F
Fluctuation relations and rare realizations of transport observables +
105  +
O
Optical realization of relativistic non-Hermitian quantum mechanics +
105  +
On the energetics of information exchange +
105  +
S
Synthetic mechanochemical molecular swimmer +
105  +
T
Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction +
105  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
106  +
E
Efficiency of autonomous soft nanomachines at maximum power +
106  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem +
106  +
O
Optimal protocols and optimal transport in stochastic thermodynamics +
106  +
H
Hydrodynamics and the fluctuation theorem +
106  +
Heat fluctuations in a nonequilibrium bath +
106  +
E
Effective temperature of red-blood-cell membrane fluctuations +
106  +
S
Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle +
106  +
T
Thermodynamic bounds on efficiency for systems with broken time-reversal symmetry +
106  +
Q
Quantum szilard engine +
106  +
T
The berg-purcell limit revisited +
106  +
I
Improving free-energy estimates from unidirectional work measurements: Theory and experiment +
107  +
Injected power fluctuations in Langevin equation +
107  +
G
Geometric effects on complex network structure in the cortex +
107  +
D
Dynamics of cooperativity in chemical sensing among cell-surface receptors +
107  +
E
Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit +
107  +
N
Nonequilibrium thermodynamics of stochastic systems with odd and even variables +
108  +
F
Fluctuation theorems for an asymmetric rotor in a granular gas +
108  +
I
Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states +
108  +
S
Stochastic energetics for non-Gaussian processes +
108  +
F
Fluctuation-preserving coarse graining for biochemical systems +
108  +
R
Role of hidden slow degrees of freedom in the fluctuation theorem +
108  +
Q
Quantum Measurement Bounds beyond the Uncertainty Relations +
108  +
T
Thermodynamics of genuine nonequilibrium states under feedback control +
108  +
The mesoscopic dynamics of thermodynamic systems +
109  +
B
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? +
109  +
R
Resolution of nested neuronal representations can be exponential in the number of neurons +
109  +
F
Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics +
109  +
T
Thermodynamics of prediction +
109  +
F
Fundamental limits on sensing chemical concentrations with linear biochemical networks +
109  +
Fundamental aspects of protein - Protein association kinetics +
109  +
Functional nucleic acid sensors +
109  +
T
Thermodynamics of information +
11  +
E
Energy as a constraint on the coding and processing of sensory information +
11  +
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