Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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From Thermodynamics of Computation

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P
Probing the Limits to Positional Information +
130  +
E
Engineering complex riboswitch regulation by dual genetic selection +
130  +
T
The work-Hamiltonian connection and the usefulness of the Jarzynski equality for free energy calculations +
130  +
D
Disrupted small-world networks in schizophrenia +
131  +
C
Control of DNA strand displacement kinetics using toehold exchange +
131  +
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? +
132  +
R
Representation of nonequilibrium steady states in large mechanical systems +
134  +
E
Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics +
134  +
D
Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism +
134  +
E
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments +
134  +
Energy conversion by molecular motors coupled to nucleotide hydrolysis +
135  +
P
Potential and flux decomposition for dynamical systems and non-equilibrium thermodynamics: Curvature, gauge field, and generalized fluctuation-dissipation theorem +
135  +
N
Non-equilibrium spin-boson model: Counting statistics and the heat exchange fluctuation theorem +
135  +
R
Rare switching events in non-stationary systems +
136  +
M
Metabolic correlates of hominid brain evolution +
136  +
N
Nonequilibrium fluctuations in small systems: from physics to biology +
137  +
Non-equilibrium thermodynamics and topology of currents +
137  +
E
Eulerian and lagrangian pictures of non-equilibrium diffusions +
137  +
F
Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains +
137  +
A
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory +
137  +
D
Defining Network Topologies that Can Achieve Biochemical Adaptation +
138  +
C
Chemical reaction network theory for in-silico biologists +
138  +
E
Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors +
139  +
O
Open problems on information and feedback controlled systems +
14  +
E
Experimental implementation of a nonthermalizing quantum thermometer +
14  +
B
Brownian motion: A paradigm of soft matter and biological physics +
14  +
G
Grid cells generate an analog error-correcting code for singularly precise neural computation +
14  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
14  +
S
Statistical Processors +
14  +
L
Leaderless deterministic chemical reaction networks +
14  +
E
Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States +
142  +
I
Inequalities for Non-equilibrium Fluctuations of Work +
142  +
N
Noise Filtering Strategies in Adaptive Biochemical Signaling Networks +
142  +
T
The Value of Information for Populations in Varying Environments +
142  +
Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale +
143  +
G
Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications +
143  +
Q
Quantum Jarzynski-Sagawa-Ueda Relations +
143  +
G
Glucans monomer-exchange dynamics as an open chemical network +
143  +
E
Epigenetics in alternative pre-mRNA splicing +
144  +
R
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions +
145  +
A
A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes +
146  +
I
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification +
146  +
M
Mechanisms for the inheritance of chromatin states +
146  +
R
Refined Second Law of Thermodynamics for Fast Random Processes +
147  +
I
Information integration: Its relevance to brain function and consciousness +
148  +
D
Dynamics and memory of heterochromatin in living cells +
149  +
A
An update on the nonequilibrium linear response +
15  +
Q
Quantum speed limits-primer, perspectives, and potential future directions +
15  +
N
Neurophysiological architecture of functional magnetic resonance images of human brain +
15  +
I
In silico evolution of diauxic growth +
15  +
Q
Quantum fluctuation relations for ensembles of wave functions +
15  +
R
Role of mutual information in entropy production under information exchanges +
15  +
O
On thermodynamic interpretation of transfer entropy +
15  +
C
Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors +
15  +
F
Flight of the FINCH through the java wilderness +
15  +
O
On rank vs. communication complexity +
15  +
H
Heat Release by Controlled Continuous-Time Markov Jump Processes +
150  +
T
TrxG and PcG proteins but not methylated histones remain associated with DNA through replication +
150  +
A
Asymmetrically modified nucleosomes +
151  +
R
Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables +
153  +
A
A Nonequilibrium Extension of the Clausius Heat Theorem +
154  +
U
Ueber die bewegende Kraft der Wärme und die Gesetze, welche sich daraus für die Wärmelehre selbst ableiten lassen +
155  +
Q
Quantum equivalent of the Carnot cycle +
156  +
F
Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer +
1566  +
T
Towards the parallel repetition conjecture +
157  +
E
Efficiency of cellular information processing +
16  +
H
Histone H3 tail clipping regulates gene expression +
16  +
How Much the Eye Tells the Brain +
16  +
S
Second-law-like inequalities with information and their interpretations +
16  +
A
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions +
16  +
Q
Quantum mechanical computers +
16  +
C
Chromatin organization marks exon-intron structure +
16  +
P
Pseudorandomness and average-case complexity via uniform reductions +
16  +
A
An intermediate level of abstraction for computational systems chemistry +
16  +
C
Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms +
17  +
D
Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? +
17  +
B
BPP and the polynomial hierarchy +
17  +
R
Randomness-efficient sampling within NC1 +
17  +
Response and habituation of the human amygdala during visual processing of facial expression +
17  +
S
Small-world networks and functional connectivity in Alzheimer's disease +
17  +
E
Energy flows in low-entropy complex systems +
17  +
B
Basal Metabolic Rate in Man +
17  +
C
Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life. +
17 supl.  +
T
Theoretical predictions of spatiotemporal receptive fields of fly LMCs, and experimental validation +
171  +
N
Noise stability of functions with low influences: Invariance and optimality +
171  +
F
Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera +
172  +
T
The superfamily of heme-copper respiratory oxidases +
176  +
Q
Quantum probabilities from quantum entanglement: Experimentally unpacking the Born rule +
18  +
T
Thermodynamics of trajectories and local fluctuation theorems for harmonic quantum networks +
18  +
R
Revealing modular architecture of human brain structural networks by using cortical thickness from MRI +
18  +
T
The microvascular system of the striate and extrastriate visual cortex of the macaque +
18  +
The emergence of human uniqueness: Characters underlying behavioral modernity +
18  +
I
Interpreting hippocampal function as recoding and forecasting +
18  +
C
Computation in networks of passively mobile finite-state sensors +
18  +
N
Neurophysiology of the BOLD fMRI Signal in Awake Monkeys +
18  +
A
ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light +
18  +
A small world of neuronal synchrony +
18  +
L
Local potential connectivity in cat primary visual cortex +
18  +
E
Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation +
18  +
T
The free energy requirements of biological organisms; implications for evolution +
18  +
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