Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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C
Cosmological experiments in superfluid helium? +
317  +
P
Physiological evidence for dendrodendritic synaptic interactions in the rabbit's olfactory glomerulus +
32  +
I
Increasing utilization in modern warehouse-scale computers using Bubble-Up +
32  +
R
Response correlation maps of neurons in the mammalian olfactory bulb +
32  +
Representation of odorants by receptor neuron input to the mouse olfactory bulb +
32  +
I
Introduction to Automata Theory, Languages, and Computation +
32  +
U
Uniform approximation and Bernstein polynomials with coefficients in the unit interval +
32  +
L
Low-power digital signal processing using approximate adders +
32  +
P
Programming DNA tube circumferences +
321  +
T
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice +
325  +
A
An analytical solution to the kinetics of breakable filament assembly +
326  +
S
Structural sources of robustness in biochemical reaction networks +
327  +
Q
Quantum thermodynamics for a model of an expanding Universe +
33  +
N
Nitric oxide and adenosine mediate vasodilation during functional activation in cerebellar cortex +
33  +
B
BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study +
33  +
A
Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study +
33  +
F
Functional brain network efficiency predicts intelligence +
33  +
B
Bacterial chemoreceptors: high-performance signaling in networked arrays +
33  +
P
Power fluctuations in stochastic models of dissipative systems +
331  +
I
Information-theoretic approach to the study of control systems +
331  +
S
Second-order selection for evolvability in a large Escherichia coli population +
331  +
D
Dissipation and noise immunity in computation and communication +
335  +
T
The lac repressor displays facilitated diffusion in living cells +
336  +
A
Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution +
338  +
A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb +
339  +
S
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis +
34  +
C
Characterizing plastic depinning dynamics with the fluctuation theorem +
34  +
F
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes +
34  +
T
The physics of molecular motors +
34  +
C
CNS energy metabolism as related to function +
34  +
I
Is adult stem cell aging driven by conflicting modes of chromatin remodeling? +
34  +
A
Analyzing molecular reaction networks: From pathways to chemical organizations +
34  +
N
Notes on Landauer's principle, reversible computation, and Maxwell's Demon +
34  +
T
Time and space bounds for reversible simulation +
34  +
S
Stochastic thermodynamics of single enzymes and molecular motors +
34  +
D
Deoxyribozymes that recode sequence information +
34  +
E
Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows +
340  +
B
Bona fide stochastic resonance: A view point from stochastic energetics +
345  +
F
Fast signals and slow marks: the dynamics of histone modifications +
35  +
A
A new notation for quantum mechanics +
35  +
E
Enzyme-free nucleic acid dynamical systems +
358  +
O
Optimum performance analysis of Feynman's engine as cold and hot ratchets +
36  +
V
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence +
36  +
T
The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution +
36  +
A
A simple coding procedure enhances a neuron’s information capacity +
36  +
P
Profiling a Warehouse-Scale Computer +
36  +
D
Dental and skeletal growth in early fossil hominins +
36  +
T
The (absence of a) relationship between thermodynamic and logical reversibility +
36  +
B
Binary Multiplication with PN Sequences +
36  +
Brownian motors: Noisy transport far from equilibrium +
361  +
R
Reducing Intrinsic Biochemical Noise in Cells and Its Thermodynamic Limit +
362  +
P
Physical Responses of Bacterial Chemoreceptors +
366  +
W
Wiring cost in the organization of a biological neuronal network +
367  +
F
Fluctuation theorem for birth-death or chemical master equations with time-dependent rates +
37  +
S
Sparse coding with an overcomplete basis set: A strategy employed by V1? +
37  +
T
The 'independent components' of natural scenes are edge filters +
37  +
A
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling +
37  +
S
Speeding up processing with approximation circuits +
37  +
T
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes +
37  +
Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) +
37  +
G
Generalization of the second law for a nonequilibrium initial state +
374  +
Generalization of the second law for a transition between nonequilibrium states +
375  +
N
Non-Hermitian Heisenberg representation +
379  +
I
Integral fluctuation theorem for the housekeeping heat +
38  +
C
Current, maximum power and optimized efficiency of a Brownian heat engine +
38  +
L
Lag inequality for birth-death processes with time-dependent rates +
38  +
Lower bounds on probabilistic linear decision trees +
38  +
N
Neurochemical organization of the macaque retina: Effect of TTX on levels and gene expression of cytochrome oxidase and nitric oxide synthase and on the immunoreactivity of Na+ K+ ATPase and NMDA receptor subunit I +
38  +
T
The connection between logical and thermodynamic irreversibility +
38  +
The unified theory of pseudorandomness: guest column +
38  +
U
Ubiquity of Benford's law and emergence of the reciprocal distribution +
380  +
A
A tension-based theory of morphogenesis and compact wiring in the central nervous system +
385  +
D
Determining cortical landscapes +
386  +
R
Robustness in simple biochemical networks +
387  +
I
Information and flux in a feedback controlled Brownian ratchet +
388  +
D
Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil +
388  +
Z
Zur Quantentheorie der Molekeln +
389  +
A
A possible classification of nonequilibrium steady states +
39  +
D
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome +
39  +
U
Use of mutual information to decrease entropy: Implications for the second law of thermodynamics +
39  +
L
Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations +
39  +
C
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity +
39  +
T
The intractability of resolution +
39  +
P
Postnatal development of olfactory receptor cell axonal arbors +
390  +
C
Collective dynamics of 'small-world' networks +
393  +
R
Robustness in bacterial chemotaxis +
397  +
A
Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements +
4  +
C
Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights +
4  +
M
Measuring information integration +
4  +
T
The statistical neuroanatomy of frontal networks in the macaque +
4  +
N
Nutritional requirements and human evolution: A bioenergetics model +
4  +
T
Thermodynamics with continuous information flow +
4  +
G
Genetic programming as a means for programming computers by natural selection +
4  +
I
Integrated information in discrete dynamical systems: Motivation and theoretical framework +
4  +
M
Multivariate information transmission +
4  +
C
Covariation of residues in the homeodomain sequence family +
4  +
O
On the degree of boolean functions as real polynomials +
4  +
M
Modular and hierarchically modular organization of brain networks +
4  +
W
What Does the Retina Know about Natural Scenes? +
4  +
U
Uncovering intrinsic modular organization of spontaneous brain activity in humans +
4  +
S
Silent synapses, LTP, and the indirect parallel-fibre pathway: Computational consequences of optimal cerebellar noise-processing +
4  +
D
Discriminatory proofreading regimes in nonequilibrium systems +
4  +
A
A quantitative comparison of sRNA-based and protein-based gene regulation +
4  +
M
Memory improves precision of cell sensing in fluctuating environments +
4  +
T
Transfer entropy and transient limits of computation +
4  +
R
Reversible electronic logic using switches +
4  +
O
On a hypothetical generational relationship between HCN and constituents of the reductive citric acid cycle +
4  +
A
A new polynomial-time algorithm for linear programming +
4  +
O
Observation of the Kibble-Zurek scaling law for defect formation in ion crystals +
4  +
T
The fundamental plan of the retina +
4  +
P
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system +
40  +
B
Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) +
40  +
A
Algorithmic randomness and physical entropy +
40  +
E
Earth mover's distance as a metric for image retrieval +
40  +
G
Generating Binary Sequences for Stochastic Computing +
40  +
A
A general model for the structure and allometry of plant vascular systems +
400  +
A synthetic oscillatory network of transcriptional regulators +
403  +
A DNA-fuelled molecular machine made of DNA +
406  +
U
Ultimate physical limits to computation +
406  +
P
Pushing the limits of lithography +
406  +
C
Compartmental organization of the olfactory bulb glomerulus +
407  +
O
Operating on chromatin, a colorful language where context matters +
409  +
M
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models +
41  +
E
Efficiency at maximum power of Feynman's ratchet as a heat engine +
41  +
A
A quantitative analysis of sniffing strategies in rats performing odor detection tasks +
41  +
O
On the Relation between Gradient Flows and the Large-Deviation Principle, with Applications to Markov Chains and Diffusion +
41  +
L
Lower bounds on the size of bounded depth circuits over a complete basis with logical addition +
41  +
O
On LICQ and the uniqueness of Lagrange multipliers +
41  +
H
Humans are not cooperative breeders but practice biocultural reproduction +
41  +
T
The ManyBugs and IntroClass Benchmarks for Automated Repair of C Programs +
41  +
A
Adipose tissue in human infancy and childhood: An evolutionary perspective +
41  +
M
Mammalian MAP kinase signalling cascades +
410  +
S
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain +
410  +
M
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins +
410  +
T
Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injection +
411  +
N
Neurophysiological investigation of the basis of the fMRI signal +
412  +
A
A general model for ontogenetic growth +
413  +
G
Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins +
414  +
L
Limited by sensing - A minimal stochastic model of the lag-phase during diauxic growth +
414  +
P
Programmable and autonomous computing machine made of biomolecules +
414  +
B
Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states +
414  +
E
Efficient checking of computations +
415 LNCS  +
H
Heat distribution function for motion in a general potential at low temperature +
42  +
A
A generalized integral fluctuation theorem for general jump processes +
42  +
T
The physics of forgetting: Landauer's erasure principle and information theory +
42  +
The entropy and efficiency of a molecular motor model +
42  +
The stochastic pump effect and geometric phases in dissipative and stochastic systems +
42  +
C
Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. +
42  +
T
The evolutionary origin of complex features +
423  +
S
Spontaneously emerging cortical representations of visual attributes +
425  +
Statistical mechanics of Monod-Wyman-Changeux (MWC) models +
425  +
B
Bayesian integration in sensorimotor learning +
427  +
S
Summing up the noise in gene networks +
427  +
I
Integration of quanta in cerebellar granule cells during sensory processing +
428  +
D
Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers +
43  +
E
Efficiency of a Carnot engine at maximum power output +
43  +
N
Noncyclic and nonadiabatic geometric phase for counting statistics +
43  +
O
Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell +
43  +
S
Synaptic connectivity and neuronal morphology: Two sides of the same coin +
43  +
O
Optimization, approximation, and complexity classes +
43  +
S
Szilard-machine-like features in a processive motor protein +
43  +
I
Incremental growth tables: Supplementary to previously published charts +
43  +
S
Small modulation of ongoing cortical dynamics by sensory input during natural vision +
431  +
I
Invariant visual representation by single neurons in the human brain +
435  +
O
Optimality and evolutionary tuning of the expression level of a protein +
436  +
M
Microstructure of a spatial map in the entorhinal cortex +
436  +
V
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies +
437  +
D
Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats +
437  +
Design principles of a bacterial signalling network +
438  +
W
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving +
44  +
A
A field-theoretic approach to non-equilibrium work identities +
44  +
Age-related changes in modular organization of human brain functional networks +
44  +
O
Optimizing non-ergodic feedback engines +
44  +
P
Proactive Control of Approximate Programs +
44  +
M
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice +
44  +
O
Of dreaming and wakefulness +
44  +
A
A molecular information ratchet +
445  +
Q
Quantum work distribution for a driven diatomic molecule +
446  +
O
On the symmetry of current probability distributions in jump processes +
45  +
F
Fluctuation theorems in the presence of information gain and feedback +
45  +
M
Multivariable fluctuation theorems in the steady-state cycle kinetics of single enzyme with competing substrates +
45  +
A
An informational process based on reversible universal cellular automata +
45  +
An efficient 10GBASE-T ethernet LDPC decoder design with low error floors +
45  +
Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics +
45  +
E
Entropy production of a bound nonequilibrium interface +
45  +
A
An information-theoretic equality implying the Jarzynski relation +
45  +
I
Invertible cellular automata: A review +
45  +
Improved decoding of reed-solomon and algebraic-geometry codes +
45  +
G
General theory of thermal fluctuations in nonlinear systems +
45  +
P
Programming biomolecular self-assembly pathways +
451  +
W
What we can do and what we cannot do with fMRI +
453  +
N
Nucleosome organization in the Drosophila genome +
453  +
H
Histone modifications at human enhancers reflect global cell-type-specific gene expression +
459  +
R
Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru +
46  +
S
Synthetic molecular motors and mechanical machines +
46  +
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction +
46  +
P
Principles of Population Genetics. +
46  +
N
Novel algorithms for fast statistical analysis of scaled circuits +
46 LNEE  +
D
Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements +
460  +
C
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain +
461  +
G
Genome evolution and adaptation in a long-term experiment with Escherichia coli +
461  +
R
Role of the polycomb protein EED in the propagation of repressive histone marks +
461  +
T
The folding cooperativity of a protein is controlled by its chain topology +
465  +
The energetics of genome complexity +
467  +
B
Biorthogonal quantum mechanics +
47  +
F
Factor graphs and the sum-product algorithm +
47  +
G
General mass action kinetics +
47  +
F
Flaked stones and old bones: Biological and cultural evolution at the dawn of technology +
47  +
I
Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks +
47  +
N
Nonequilibrium thermodynamic formalism of nonlinear chemical reaction systems with Waage-Guldberg's law of mass action +
472  +
T
The thermodynamic meaning of negative entropy +
474  +
N
Neural network computation with DNA strand displacement cascades +
475  +
T
The large deviation approach to statistical mechanics +
478  +
R
Resonances arising from hydrodynamic memory in Brownian motion +
478  +
N
Network theory of microscopic and macroscopic behavior of master equation systems +
48  +
A
Another proof of Gell-Mann and Low's theorem +
48  +
A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy +
48  +
O
Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neurons +
48  +
G
General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening +
48  +
A
An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions +
48  +
O
On the complexity of the parity argument and other inefficient proofs of existence +
48  +
E
Energetics and the evolution of human brain size +
480  +
Experimental verification of Landauer's principle linking information and thermodynamics +
483  +
B
Biomolecules under mechanical force +
486  +
E
Electromagnetic gauge-freedom and work +
49  +
N
Necessary and sufficient conditions for complex balancing in chemical kinetics +
49  +
H
Hardness vs randomness +
49  +
T
The entorhinal grid map is discretized +
492  +
S
Synthetic analog computation in living cells +
497  +
Synthetic biology: It's an analog world +
497  +
A
Analog Computation by DNA Strand Displacement Circuits +
5  +
N
Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces +
5  +
F
Functional brain networks develop from a "local to distributed" organization +
5  +
Fly photoreceptors demonstrate energy-information trade-offs in neural coding +
5  +
B
Brain anatomical network and intelligence +
5  +
H
High nucleosome occupancy is encoded at human regulatory sequences +
5  +
G
Global and regional brain metabolic scaling and its functional consequences +
5  +
I
Intermittent Transcription Dynamics for the Rapid Production of Long Transcripts of High Fidelity +
5  +
O
On boolean decision trees with faulty nodes +
5  +
R
Resurrecting ancient genes: Experimental analysis of extinct molecules +
5  +
Q
Qualia: The geometry of integrated information +
5  +
P
Programmable energy landscapes for kinetic control of DNA strand displacement +
5  +
M
Modeling the impact of lesions in the human brain +
5  +
I
Irreversibility and Heat Generation in the Computing Process +
5  +
A
An information integration theory of consciousness +
5  +
E
Equilibrium microstates which generate second law violating steady states +
50  +
C
Current trends in finite-time thermodynamics +
50  +
T
Time-frequency dynamics of resting-state brain connectivity measured with fMRI +
50  +
S
Stochastic neural computation I: Computational elements +
50  +
SRAM for error-tolerant applications with dynamic energy-quality management in 28 nm CMOS +
50  +
C
Costs of encephalization: the energy trade-off hypothesis tested on birds +
51  +
Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty +
51  +
Cube v4: From performance report explorer to performance analysis tool +
51  +
A
A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks +
51  +
S
Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics +
510  +
M
Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex +
512  +
I
Instrumentation applications of multibit random-data representation +
52  +
A
Article for analog vector algebra computation +
52  +
S
Sensory-Evoked Intrinsic Optical Signals in the Olfactory Bulb Are Coupled to Glutamate Release and Uptake +
52  +
N
Near-optimal signal recovery from random projections: Universal encoding strategies? +
52  +
C
Complex network measures of brain connectivity: Uses and interpretations +
52  +
H
Heat generation required by information erasure +
52  +
C
Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums +
52  +
T
The quiet revolution of numerical weather prediction +
525  +
O
Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard +
526  +
C
Complex and detailed balancing of chemical reaction networks revisited +
53  +
M
Motion out of noisy states +
53  +
U
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen +
53  +
D
DNA as a universal substrate for chemical kinetics (Extended Abstract) +
5347 LNCS  +
E
Energy Aware Computing Through Probabilistic Switching: A Study of Limits +
54  +
L
Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild +
54  +
N
Network modelling methods for FMRI +
54  +
A
Alternative splicing in the nervous system: An emerging source of diversity and regulation +
54  +
C
Cerebellar LTD and Pattern Recognition by Purkinje Cells +
54  +
E
Energy aware computing through probabilistic switching: A study of limits +
54  +
F
Fuzzy Memoization for Floating-Point Multimedia Applications +
54  +
H
Histone acetylation as an epigenetic determinant of long-term transcriptional competence +
54  +
T
Thermodynamic performance characteristics of a Brownian microscopic heat engine driven by discrete and periodic temperature field +
54  +
E
Evidence for early life in Earth's oldest hydrothermal vent precipitates +
543  +
Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics +
55  +
I
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine +
55  +
N
New evidence for hominin carcass processing strategies at 1.5 Ma, Koobi Fora, Kenya +
55  +
A
A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms +
55  +
N
Natural Proofs +
55  +
T
The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses +
552  +
E
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach +
56  +
A
Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI +
56  +
T
The magnificent compromise: cortical field evolution in mammals. +
56  +
O
On the origin of modular variation +
56  +
I
Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior +
56  +
Inhibition and Brain Work +
56  +
R
Recent Development in Efficient Adiabatic Logic Circuits and Power Analysis with CMOS Logic +
57  +
T
The Stokes efficiency for molecular motors and its applications +
57  +
The relationship between stochastic and deterministic models for chemical reactions +
57  +
K
Kinetic amplification of enzyme discrimination +
57  +
S
Selforganization of matter and the evolution of biological macromolecules +
58  +
M
Modelling the development of cortical systems networks +
58-60  +
R
Receptive fields and functional architecture in the retina +
587  +
I
Information and maximum power in a feedback controlled Brownian ratchet +
59  +
D
Delayed stochastic decoding of LDPC codes +
59  +
S
Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion +
59  +
C
Chemical Reaction Networks for Computing Polynomials +
6  +
E
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality +
6  +
O
Observation of parity-time symmetry in optics +
6  +
E
Emergent complex neural dynamics +
6  +
N
Neuroenergetics and the kinetic design of excitatory synapses +
6  +
D
Design of a trichromatic cone array +
6  +
M
Maxwell's demon in biochemical signal transduction with feedback loop +
6  +
T
The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate +
6  +
A
Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network +
6  +
D
Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator +
6  +
E
Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes +
6  +
L
Large Deviation Bounds for Markov Chains +
6  +
T
Targeting olfaction +
6  +
S
Speed and accuracy of olfactory discrimination in the rat +
6  +
T
The conscious access hypothesis: Origins and recent evidence +
6  +
O
One rule to grow them all: A general theory of neuronal branching and its practical application +
6  +
E
Efficient physical embedding of topologically complex information processing networks in brains and computer circuits +
6  +
M
Mapping the structural core of human cerebral cortex +
6  +
A
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli +
6  +
T
The minimal work cost of information processing +
6  +
The limits of chemosensation vary across dimensions +
6  +
A
A fast and elitist multiobjective genetic algorithm: NSGA-II +
6  +
E
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences +
60  +
A
An architecture for fault-tolerant computation with stochastic logic +
60  +
R
Reversible space equals deterministic space +
60  +
E
Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium +
60  +
P
Path-ensemble averages in systems driven far from equilibrium +
61  +
S
Some informational aspects of visual perception +
61  +
T
The scaling of white matter to gray matter in cerebellum and neocortex +
61  +
U
Unattainability of Carnot efficiency in the Brownian heat engine +
62  +
B
Brain growth, life history, and cognition in primate and human evolution +
62  +
R
Rapid Neocortical Dynamics: Cellular and Network Mechanisms +
62  +
L
Lower bounds for resolution and cutting plane proofs and monotone computations +
62  +
S
Schizophrenia, neuroimaging and connectomics +
62  +
Stochastic dynamics, efficiency and sustainable power production +
62  +
R
Representations of Odor in the Piriform Cortex +
63  +
T
Tracking forecast memories for stochastic decoding +
63  +
E
Easiness Assumptions and Hardness Tests: Trading Time for Zero Error +
63  +
R
Relative entropy: Free energy associated with equilibrium fluctuations and nonequilibrium deviations +
63  +
P
Predictive information and explorative behavior of autonomous robots +
63  +
L
Logical computation on stochastic bit streams with linear finite-state machines +
63  +
M
Modular verification of chemical reaction network encodings via serializability analysis +
632  +
S
Stochastic thermodynamics: principles and perspectives +
64  +
N
Nonequilibrium steady-state circulation and heat dissipation functional +
64  +
C
Criticism of Feynman’s analysis of the ratchet as an engine +
64  +
S
Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking Neurons +
64  +
A
Active membrane fluctuations studied by micropipet aspiration +
64  +
M
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation +
65  +
Modeling an efficient Brownian heat engine +
65  +
S
Size at birth, postnatal growth and risk of obesity +
65  +
T
Time-dependent pseudo-Hermitian Hamiltonians defining a unitary quantum system and uniqueness of the metric operator +
650  +
E
Efficient turing-universal computation with DNA polymers +
6518 LNCS  +
D
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome +
6577 LNBI  +
S
Statistics of power injection in a plate set into chaotic vibration +
66  +
M
Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation +
66  +
T
Thermodynamics and an Introduction to Thermostatistics, 2nd ed. +
66  +
F
From logarithmic advice to single-bit advice +
6650 LNCS  +
E
Entropy fluctuations in shell models of turbulence +
67  +
Q
Quantum discord and Maxwell’s demons +
67  +
T
The topology of energy hypersurfaces III. The fundamental group of reaction mechanisms on potential energy hypersurfaces +
67  +
P
Pseudo-random generators for all hardnesses +
67  +
S
Stationary and transient work-fluctuation theorems for a dragged Brownian particle +
67  +
M
Measuring the fluctuation-dissipation ratio in glassy systems with no perturbing field +
68  +
D
Dynamics of market correlations: Taxonomy and portfolio analysis +
68  +
Disrupted axonal fiber connectivity in schizophrenia +
69  +
P
Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication +
69  +
T
Total entropy production fluctuation theorems in a nonequilibrium time-periodic steady state +
69  +
E
Extended heat-fluctuation theorems for a system with deterministic and stochastic forces +
69  +
M
Modelling, simulating and verifying Turing-powerful strand displacement systems +
6937 LNCS  +
L
Less haste, less waste: On recycling and its limits in strand displacement systems +
6937 LNCS  +
T
Thermodynamics of Computational Copying in Biochemical Systems +
7  +
E
Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements +
7  +
S
Structural properties of the Caenorhabditis elegans neuronal network +
7  +
R
Relationships between gene expression and brain wiring in the adult rodent brain +
7  +
A
Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments +
7  +
G
Genome sizes and the benford distribution +
7  +
P
Prevalence of epistasis in the evolution of influenza A surface proteins +
7  +
G
Genome-wide patterns of histone modifications in yeast +
7  +
S
Synthetic in vitro transcriptional oscillators +
7  +
M
Matching is as easy as matrix inversion +
7  +
D
Development of large-scale functional brain networks in children +
7  +
V
Variability, compensation and homeostasis in neuron and network function +
7  +
E
Entropy involved in fidelity of DNA replication +
7  +
C
Computation with finite stochastic chemical reaction networks +
7  +
H
Helical logic +
7  +
C
Chromatin computation +
7  +
T
Thermodynamics of computational copying in biochemical systems +
7  +
P
Performance assessment of multiobjective optimizers: An analysis and review +
7  +
C
Correlated evolution of nearby residues in drosophilid proteins +
7  +
I
Integrated information increases with fitness in the evolution of animats +
7  +
D
Digital genetics: Unravelling the genetic basis of evolution +
7  +
O
One way functions and pseudorandom generators +
7  +
N
Neurobiologically realistic determinants of Self-Organized criticality in networks of spiking neurons +
7  +
F
Fluctuation theorem for a single enzym or molecular motor +
70  +
D
Distribution of work in isothermal nonequilibrium processes +
70  +
E
Experimental and Theoretical Approaches to Conscious Processing +
70  +
A
An experimental test of the Jarzynski equality in a mechanical experiment +
70  +
S
Single-photon detection by rod cells of the retina +
70  +
P
Probability of second law violations in shearing steady states +
71  +
C
Closed-loop control strategy with improved current for a flashing ratchet +
71  +
O
Off-equilibrium generalization of the fluctuation dissipation theorem for Ising spins and measurement of the linear response function +
71  +
N
Nonequilibrium fluctuations in a resistor +
71  +
P
Probabilities from entanglement, Born's rule pk=ψk2 from envariance +
71  +
J
Jarzynski equality for the Jepsen gas +
71  +
A
An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation +
71  +
C
Convergence in the olfactory system: quantitative aspects of odour sensitivity +
71  +
E
Experimental study of the fluctuation theorem in a nonequilibrium steady state +
71  +
T
Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection +
72  +
F
Fluctuation-dissipation relations for Markov processes +
72  +
W
Work distribution functions for hysteresis loops in a single-spin system +
72  +
U
Unified treatment of the quantum fluctuation theorem and the Jarzynski equality in terms of microscopic reversibility +
72  +
S
Self-regulating gene: An exact solution +
72  +
I
Injected power and entropy flow in a heated granular gas +
72  +
M
Molecular combustion motors +
72  +
N
Neuroimaging and neuroenergetics: Brain activations as information-driven reorganization of energy flows +
72  +
E
Enstrophy dissipation in two-dimensional turbulence +
72  +
P
Probabilistic algorithms for verification of polynomial identities +
72 LNCS  +
R
Rare events and the convergence of exponentially averaged work values +
73  +
D
Dynamics of a tracer granular particle as a nonequilibrium Markov process +
73  +
F
Fluctuation-dissipation relations in driven dissipative systems +
73  +
Fluctuation theorems for quantum master equations +
73  +
H
How Far is Complex Balancing from Detailed Balancing? +
73  +
E
Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems +
73  +
D
Dynamical ensembles in nonequilibrium statistical mechanics +
74  +
N
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport +
74  +
F
Fluctuation relations for a driven Brownian particle +
74  +
Fluctuation symmetries for work and heat +
74  +
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors +
74  +
G
Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes +
74  +
V
Vertex cover might be hard to approximate to within 2 - ε +
74  +
F
Free-energy reconstruction from experiments performed under different biasing programs +
74  +
W
Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity +
74  +
T
Tight coupling in thermal Brownian motors +
74  +
Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state +
74  +
S
Stochastic thermodynamics, fluctuation theorems and molecular machines +
75  +
E
Energy use constrains brain information processing +
75  +
Efficiency and fluctuation in tight-coupling model of molecular motor +
75  +
N
Nonequilibrium work fluctuations for oscillators in non-Markovian baths +
75  +
F
Fluctuation theorems for a molecular refrigerator +
75  +
D
Decoherence, einselection, and the quantum origins of the classical +
75  +
F
Fluctuation theorems: Work is not an observable +
75  +
Q
Quantifying noise levels of intercellular signals +
75  +
I
Intensive thermodynamic parameters in nonequilibrium systems +
75  +
M
Microscopic heat from the energetics of stochastic phenomena +
76  +
W
Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments +
76  +
N
New device for high-throughput viability screening of flow biofilms +
76  +
V
Verifying chemical reaction network implementations: A pathway decomposition approach +
765  +
T
The Berry phase and the pump flux in stochastic chemical kinetics +
77  +
I
Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit +
77  +
N
Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field +
77  +
Nonequilibrium fluctuation theorems in the presence of local heating +
77  +
O
Onsager coefficients of a Brownian Carnot cycle +
77  +
S
Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes +
77  +
L
Localization transitions in non-hermitian quantum mechanics +
77  +
C
Computing the optimal protocol for finite-time processes in stochastic thermodynamics +
77  +
E
Effective temperature of active matter +
77  +
N
Nonequilibrium equality for free energy differences +
78  +
L
Lower bounds on dissipation upon coarse graining +
78  +
N
Nonlinear response and fluctuation-dissipation relations +
78  +
O
One-dimensional shift of a brownian particle under the feedback control +
78  +
P
Posterior probability and fluctuation theorem in stochastic processes +
78  +
Q
Quantum criticality as a resource for quantum estimation +
78  +
C
Chemical kinetics is turing universal +
78  +
L
Large deviation function for entropy production in driven one-dimensional systems +
78  +
E
Experimental demonstration of a latch in clocked quantum-dot cellular automata +
78  +
F
Fluctuation-dissipation theorems and entropy production in relaxational systems +
79  +
Far-from-equilibrium measurements of thermodynamic length +
79  +
Fluctuations of energy flux in a simple dissipative out-of-equilibrium system +
79  +
O
Optimal potentials for temperature ratchets +
79  +
J
Jarzynski equality modified in the linear feedback system +
79  +
E
Extended fluctuation-dissipation theorem for soft matter in stationary flow +
79  +
T
Thermodynamics of feedback controlled systems +
79  +
U
Using bijective maps to improve free-energy estimates +
79  +
O
Operation modes of the molecular motor kinesin +
79  +
F
Fluctuation ratios in the absence of microscopic time reversibility +
79  +
M
Macroscopic expression connecting the rate of energy dissipation with the violation of the fluctuation response relation +
79  +
S
Space-time phase transitions in driven kinetically constrained lattice models +
79  +
N
Nonequilibrium thermodynamic analysis of squeezing +
79  +
J
Jarzynski equation for a simple quantum system: Comparing two definitions of work +
79  +
R
Role of Astrocytes in Matching Blood Flow to Neuronal Activity +
79  +
T
Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework +
79  +
E
Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina +
79  +
T
The hidden simplicity of biology +
79  +
S
Second law of thermodynamics for macroscopic mechanics coupled to thermodynamic degrees of freedom +
79  +
Stochasticity of gene products from transcriptional pulsing +
79  +
G
Generalizing Landauer's principle +
79  +
S
Statistical physics of a model binary genetic switch with linear feedback +
79  +
G
Generalized integral fluctuation theorem for diffusion processes +
79  +
O
On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution +
794  +
W
Work and heat probability distributions in out-of-equilibrium systems +
8  +
T
The energy–speed–accuracy trade-off in sensory adaptation +
8  +
C
Comparison of far-from-equilibrium work relations +
8  +
T
Thermodynamics: A stirling effort +
8  +
The energy-speed-accuracy trade-off in sensory adaptation +
8  +
R
Realization of a micrometre-sized stochastic heat engine +
8  +
I
Intraglomerular inhibition: Signaling mechanisms of an olfactory microcircuit +
8  +
O
Organization, development and function of complex brain networks +
8  +
E
Entropic tension in crowded membranes +
8  +
T
Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints +
8  +
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