Santa Fe Institute Collaboration Platform:Reference Materials

Reference Materials

	Year	Abstract
A "fast growth" method of computing free energy differences
A (sub)graph isomorphism algorithm for matching large graphs	2004
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling	2002
A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory	2009
A Cost / Speed / Reliability Trade-off in Erasing a Bit	2015	We present a Kullback-Leibler (KL) control treatment of the fundamental problem of erasing a bit. We introduce notions of '"`UNIQ--math-00000CE1-QINU`"' of information storage via a reliability timescale '"`UNIQ--math-00000CE2-QINU`"', and speed of erasing via an erasing timescale '"`UNIQ--math-00000CE3-QINU`"'. Our problem formulation captures the tradeoff between speed, reliability, and the Kullback-Leibler (KL) cost required to erase a bit. We show that rapid erasing of a reliable bit costs at least '"`UNIQ--math-00000CE4-QINU`"', which goes to '"`UNIQ--math-00000CE5-QINU`"' when '"`UNIQ--math-00000CE6-QINU`"'.
A DNA-fuelled molecular machine made of DNA	2000
A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics
A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes	2012
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering	2014
A Kilobit Special Number Field Sieve Factorization
A Map of the Interactome Network of the Metazoan C. elegans	2004
A Nonequilibrium Extension of the Clausius Heat Theorem	2014
A Note on Bennett’s Time-Space Tradeoff for Reversible Computation
A Parallel Repetition Theorem
A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes
A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs
A Sampling of the Yeast Proteome
A Simple Histone Code Opens Many Paths to Epigenetics	2012
A Simple Model of Optimal Population Coding for Sensory Systems	2014
A Survey of Techniques for Approximate Computing
A bound particle coupled to two thermostats	2011
A complete problem for statistical zero knowledge
A complexity measure for selective matching of signals by the brain
A complexity theoretic approach to randomness
A cost/speed/reliability tradeoff to erasing	2015	We present a KL-control treatment of the fundamental problem of erasing a bit. We introduce notions of "reliability" of information storage via a reliability timescale '"`UNIQ--math-00000CDB-QINU`"', and "speed" of erasing via an erasing timescale '"`UNIQ--math-00000CDC-QINU`"'. Our problem formulation captures the tradeoff between speed, reliability, and the Kullback-Leibler (KL) cost required to erase a bit. We show that rapid erasing of a reliable bit costs at least '"`UNIQ--math-00000CDD-QINU`"', which goes to '"`UNIQ--math-00000CDE-QINU`"' when '"`UNIQ--math-00000CDF-QINU`"'.
A fast and elitist multiobjective genetic algorithm: NSGA-II	2002
A fast quantum mechanical algorithm for database search
A field-theoretic approach to non-equilibrium work identities	2011
A fluctuation theorem for currents and non-linear response coefficients	2007
A fluctuation theorem for non-equilibrium relaxational systems driven by external forces	2005
A general framework for non-equilibrium phenomena: The master equation and its formal consequences	1997
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions	1976
A general model for ontogenetic growth	2001
A general model for the origin of allometric scaling laws in biology
A general model for the structure and allometry of plant vascular systems	1999
A general purpose RNA-cleaving DNA enzyme
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation	1989
A generalized integral fluctuation theorem for general jump processes	2009
A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks	2013
A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb	2013
A master equation description of local fluctuations	1975
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium	2002
A mathematical theory of communication
A measure for brain complexity: relating functional segregation and integration in the nervous system.
A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy	2002
A model for transmission of the H3K27me3 epigenetic mark	2008
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli	2010
A molecular information ratchet	2007
A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares
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