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From Thermodynamics of Computation
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List of results
- A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory + (David J. Katz)
- An architecture for fault-tolerant computation with stochastic logic + (Weikang Qian)
- Stochastic functions using sequential logic + (Naman Saraf)
- Computation on stochastic bit streams digital image processing case studies + (Peng Li)
- A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic + (Peng Li)
- Logical computation on stochastic bit streams with linear finite-state machines + (Peng Li)
- Variable channel expression in identified single and electrically coupled neurons in different animals + (David J. Schulz)
- Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states + (Gatien Verley)
- Glucans monomer-exchange dynamics as an open chemical network + (Riccardo Rao)
- Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain + (Gatien Verley)
- A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy + (David M. Cohen)
- Neurophysiological architecture of functional magnetic resonance images of human brain + (Raymond Salvador)
- Modular and hierarchically modular organization of brain networks + (David Meunier)
- Age-related changes in modular organization of human brain functional networks + (David Meunier)
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes + (Andre Cardoso Barato)
- Role of Astrocytes in Matching Blood Flow to Neuronal Activity + (Danica Jakovcevic)
- Localization transitions in non-hermitian quantum mechanics + (Naomichi Hatano)
- Fluctuation-dissipation theorems and entropy production in relaxational systems + (Leticia F. Cugliandolo)
- Nucleosome organization in the Drosophila genome + (Travis N. Mavrich)
- Structure and function of a human TAF(II)250 double bromodomain module + (Raymond H. Jacobson)
- An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions + (David Shear)
- Deterministic Function Computation with Chemical Reaction Network + (Ho Lin Chen)
- Computation with finite stochastic chemical reaction networks + (David Soloveichik)
- DNA as a universal substrate for chemical kinetics (Extended Abstract) + (David Soloveichik)
- Programmable chemical controllers made from DNA + (Yuan Jyue Chen)
- Enzyme-free nucleic acid dynamical systems + (Niranjan Srinivas)
- Deterministic function computation with chemical reaction networks + (Ho Lin Chen)
- Efficient turing-universal computation with DNA polymers + (Lulu Qian)
- Probing the Limits to Positional Information + (Thomas Gregor)
- Drivers of bacterial maintenance and minimal energy requirements + (Peter M. van Bodegom)
- Enzyme-free nucleic acid logic circuits + (Georg Seelig)
- Dynamic DNA nanotechnology using strand-displacement reactions + (David Yu Zhang)
- Control of DNA strand displacement kinetics using toehold exchange + (David Yu Zhang)
- Effective temperature of active matter + (Davide Loi)
- Covalent modifications of histones during mitosis and meiosis + (Dazhong Xu)
- Low-power digital signal processing using approximate adders + (Vaibhav Gupta)
- Single-molecule thermodynamics: The heat distribution function of a charged particle in a static magnetic field + (Debarati Chatterjee)
- Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator + (Debarati Chatterjee)
- Bona fide stochastic resonance: A view point from stochastic energetics + (Debasis Dan)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- A small world of neuronal synchrony + (Shan Yu)
- Consensus paper: The cerebellum's role in movement and cognition + (Leonard F. Koziol)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Equilibrium microstates which generate second law violating steady states + (Denis J. Evans)
- Probability of second law violations in shearing steady states + (Denis J. Evans)
- Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap + (D. M. Carberry)
- Experimental study of the fluctuation theorem in a nonequilibrium steady state + (G. M. Wang)
- SRAM for error-tolerant applications with dynamic energy-quality management in 28 nm CMOS + (Fabio Frustaci)
- High nucleosome occupancy is encoded at human regulatory sequences + (Desiree Tillo)
- Observation of parity-time symmetry in optics + (Christian E. Rüter)
- Fluctuation theorems for an asymmetric rotor in a granular gas + (Sylvain Joubaud)
- Relationship between subsistence and age at weaning in "preindustrial" societies + (Daniel W. Sellen)
- Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru + (Isa Baud)
- Maxwell's refrigerator: An exactly solvable model + (Dibyendu Mandal)
- Quantum-to-classical transition in the work distribution for chaotic systems + (Ignacio García-Mata)
- A model for transmission of the H3K27me3 epigenetic mark + (Klaus H. Hansen)
- Thermophoretic depletion follows boltzmann distribution + (Stefan Duhr)
- General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening + (Xiaohong Cheng)
- Experimental test of the quantum Jarzynski equality with a trapped-ion system + (Shuoming An)
- Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions + (Alexander J. Ruthenburg)
- Combinatorial readout of dual histone modifications by paired chromatin-associated modules + (Zhanxin Wang)
- Progressive methylation of ageing histones by Dot1 functions as a timer + (Dirk De Vos)
- Energy allocation between brain and body during ontogenetic development + (Britta Kubera)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Structural properties of the Caenorhabditis elegans neuronal network + (Lav R. Varshney)
- Synaptic connectivity and neuronal morphology: Two sides of the same coin + (Dmitri B. Chklovskii)
- Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain + (Marta Rivera-Alba)
- Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) + (Dmitri B. Chklovskii)
- Local potential connectivity in cat primary visual cortex + (Armen Stepanyants)
- Spontaneously emerging cortical representations of visual attributes + (Tal Kenet)
- Evidence for early life in Earth's oldest hydrothermal vent precipitates + (Matthew S. Dodd)
- Thermodynamic efficiency of information and heat flow + (Armen E. Allahverdyan)
- The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate + (Dominique Chu)
- Limited by sensing - A minimal stochastic model of the lag-phase during diauxic growth + (Dominique Chu)
- In silico evolution of diauxic growth + (Dominique F. Chu)
- On thermodynamic interpretation of transfer entropy + (Mikhail Prokopenko)
- Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins + (Christopher Dean)
- Proactive Control of Approximate Programs + (Xin Sui)
- Application-level correctness and its impact on fault tolerance + (Xuanhua Li)
- Exploiting Soft Computing for Increased Fault Tolerance + (Xuanhua Li)
- Genome evolution and adaptation in a long-term experiment with Escherichia coli + (Jeffrey E. Barrick)
- An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions + (Donna G. Blackmond)
- Correlated evolution of nearby residues in drosophilid proteins + (Benjamin Callahan)
- Memory improves precision of cell sensing in fluctuating environments + (Gerardo Aquino)
- Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights + (Anatole S. Dekaban)
- Complex Extension of Quantum Mechanics + (Carl M. Bender)
- Biorthogonal quantum mechanics + (Dorje C. Brody)
- Stretching the limits of clock-gating efficiency in server-class processors + (Hans Jacobson)
- Chemotaxis in Escherichia coli analysed by three-dimensional tracking + (Howard C. Berg)
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity + (Matthew D. Young)
- Energetic basis of brain activity: Implications for neuroimaging + (Robert G. Shulman)
- Fluctuation-dissipation relations in driven dissipative systems + (Yair Shokef)
- Nonequilibrium fluctuation theorems in the presence of local heating + (Punyabrata Pradhan)
- Exactly solvable model for driven dissipative systems + (Yair Srebro)
- An estimate of the total DNA in the biosphere + (Hanna K.E. Landenmark)
- Collective dynamics of 'small-world' networks + (Duncan J. Watts)
- Holevo's bound from a general quantum fluctuation theorem + (Dvir Kafri)
- Non-equilibrium spin-boson model: Counting statistics and the heat exchange fluctuation theorem + (Lena Nicolin)
- Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard + (T. Gao)
- Dynamical ensembles in nonequilibrium statistical mechanics + (E. G.D. Cohen)
- Inertial effects in nonequilibrium work fluctuations by a path integral approach + (E. G.D. Cohen)
- Extension of the fluctuation theorem + (E. G.D. Cohen)
- Steady-state work fluctuations of a dragged particle under external and thermal noise + (E. G.D. Cohen)
- Nonequilibrium steady state thermodynamics and fluctuations for stochastic systems + (E. G.D. Cohen)
- Stationary and transient work-fluctuation theorems for a dragged Brownian particle + (E. G.D. Cohen)
- Extended heat-fluctuation theorems for a system with deterministic and stochastic forces + (E. G.D. Cohen)
- Probability of second law violations in shearing steady states + (E. G.D. Cohen)
- The stochastic chemomechanics of the F1-ATPase molecular motor + (P. Gaspard)
- Nanoscale heat engine beyond the carnot limit + (J. Roßnagel)
- Quantum fluctuation theorems in the strong damping limit + (S. Deffner)
- Physics of chemoreception + (H. C. Berg)
- Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap + (D. M. Carberry)
- Experimental study of the fluctuation theorem in a nonequilibrium steady state + (G. M. Wang)
- Dynamical reconnection and stability constraints on cortical network architecture + (P. A. Robinson)
- A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy + (David M. Cohen)
- Quantum equivalent of the Carnot cycle + (J. E. Geusic)
- Predictive information and explorative behavior of autonomous robots + (N. Ay)
- Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. + (E. R. Weibel)
- Injected power and entropy flow in a heated granular gas + (P. Visco)
- Quantum probabilities from quantum entanglement: Experimentally unpacking the Born rule + (Jérémie Harris)
- Performance assessment of multiobjective optimizers: An analysis and review + (Eckart Zitzler)
- Neurophysiological architecture of functional magnetic resonance images of human brain + (Raymond Salvador)
- Age-related changes in modular organization of human brain functional networks + (David Meunier)
- Efficiency and cost of economical brain functional networks + (Sophie Achard)
- Small-world brain networks + (Danielle Smith Bassett)
- Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation + (Ara Kocharyan)
- Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction + (Eduardo D. Sontag)
- Microstructure of a spatial map in the entorhinal cortex + (Torkel Hafting)
- The entorhinal grid map is discretized + (Hanne Stensola)
- Thermodynamic constraints for biochemical networks + (Daniel A. Beard)
- An informational process based on reversible universal cellular automata + (Edward Fredkin)
- Conservative logic + (Edward Fredkin)
- Far-from-equilibrium measurements of thermodynamic length + (Edward H. Feng)
- Length of time's arrow + (Edward H. Feng)
- The ManyBugs and IntroClass Benchmarks for Automated Repair of C Programs + (Claire Le Goues)
- Disrupted axonal fiber connectivity in schizophrenia + (Andrew Zalesky)
- Modular and hierarchically modular organization of brain networks + (David Meunier)
- Schizophrenia, neuroimaging and connectomics + (Alex Fornito)
- What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? + (Alex Fornito)
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits + (Danielle S. Bassett)
- Human brain networks in health and disease + (Danielle S. Bassett)
- The anatomical distance of functional connections predicts brain network topology in health and schizophrenia + (Aaron F. Alexander-Bloch)
- Image quality assessment: From error visibility to structural similarity + (Zhou Wang)
- Programmable and autonomous computing machine made of biomolecules + (Yaakov Benenson)
- Recovery of state-specific potential of molecular motor from single-molecule trajectory + (Shoichi Toyabe)
- Nonequilibrium energetics of a single F1-ATPase molecule + (Shoichi Toyabe)
- Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality + (Shoichi Toyabe)
- A Simple Model of Optimal Population Coding for Sensory Systems + (Eizaburo Doi)
- Progressive methylation of ageing histones by Dot1 functions as a timer + (Dirk De Vos)
- Noise stability of functions with low influences: Invariance and optimality + (Elchanan Mossel)
- RAS oncogenes: Weaving a tumorigenic web + (Yuliya Pylayeva-Gupta)
- TrxG and PcG proteins but not methylated histones remain associated with DNA through replication + (Svetlana Petruk)
- The scaling of white matter to gray matter in cerebellum and neocortex + (Eliot C. Bush)
- The entropy and efficiency of a molecular motor model + (Eliran Boksenbojm)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator + (Maximilian Weitz)
- Self-organization and entropy reduction in a living cell + (Paul C.W. Davies)
- Coding of Odors by a Receptor Repertoire + (Elissa A. Hallem)
- The folding cooperativity of a protein is controlled by its chain topology + (Elizabeth A. Shank)
- Yeast HOG1 MAP kinase cascade is regulated by a multistep phosphorelay mechanism in the SLN1-YPD1-SSK1 'two-component' osmosensor + (Francesc Posas)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis + (Aaron Fluitt)
- Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality + (Daniel K. West)
- Quantum Simulation of Single-Qubit Thermometry Using Linear Optics + (Luca Mancino)
- Instrumentation applications of multibit random-data representation + (Emil M. Petriu)
- Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life. + (Linus Pauling)
- Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification + (Minjia Tan)
- Building programmable jigsaw puzzles with RNA + (Arkadiusz Chworos)
- Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors + (Emmanuel Hermans)
- Near-optimal signal recovery from random projections: Universal encoding strategies? + (Emmanuel J. Candes)
- Fluctuations of internal energy flow in a vibrated granular gas + (Andrea Puglisi)
- Dynamics of a tracer granular particle as a nonequilibrium Markov process + (Andrea Puglisi)
- Human neoteny revisited: The case of synaptic plasticity + (Enric Bufill)
- Chromatin organization marks exon-intron structure + (Schraga Schwartz)
- High nucleosome occupancy is encoded at human regulatory sequences + (Desiree Tillo)
- Optimality and evolutionary tuning of the expression level of a protein + (Erez Dekel)
- Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain + (Andrew J. Bannister)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature + (Kirsten Martens)
- Intensive thermodynamic parameters in nonequilibrium systems + (Eric Bertin)
- Dependence of the fluctuation-Dissipation temperature on the choice of observable + (Kirsten Martens)
- Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) + (Eric Cheng)
- Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru + (Isa Baud)
- Probing the Limits to Positional Information + (Thomas Gregor)
- Fluctuations of energy flux in a simple dissipative out-of-equilibrium system + (Claudio Falcón)
- Seflab: A lab for measuring software energy footprints + (Miguel A. Ferreira)
- Energy flows in low-entropy complex systems + (Eric J. Chaisson)
- Why do female primates have such long lifespans and so few babies? or Life in the slow lane + (Eric L. Charnov)
- Drivers of bacterial maintenance and minimal energy requirements + (Peter M. van Bodegom)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)
- Memory erasure in small systems + (Raoul Dillenschneider)
- Nonequilibrium thermodynamic analysis of squeezing + (Fernando Galve)
- Fluctuation theorems: Work is not an observable + (Peter Talkner)
- Motor-Driven Dynamics in Actin-Myosin Networks + (Loïc Le Goff)
- The work-Hamiltonian connection and the usefulness of the Jarzynski equality for free energy calculations + (Eric N. Zimanyi)
- Structural properties of the Caenorhabditis elegans neuronal network + (Lav R. Varshney)
- On r- and K-Selection + (Eric R. Pianka)
- An introduction to population protocols + (James Aspnes)
- Thermodynamics of natural selection III: Landauer’s principle in computation and chemistry + (Eric Smith)
- Thermodynamics of natural selection I: Energy flow and the limits on organization + (Eric Smith)
- Thermodynamics of natural selection II: Chemical Carnot cycles + (Eric Smith)
- Thermodynamics of natural selection III: Landauer's principle in computation and chemistry + (Eric Smith)
- Optimizing Google's warehouse scale computers: The NUMA experience + (Lingjia Tang)
- A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling + (Kevin J. Nowka)
- The WUS homeobox-containing (WOX) protein family + (Eric van der Graaff)
- Optimal protocols and optimal transport in stochastic thermodynamics + (Erik Aurell)
- Boundary layers in stochastic thermodynamics + (Erik Aurell)
- Refined Second Law of Thermodynamics for Fast Random Processes + (Erik Aurell)
- Complex parameter landscape for a complex neuron model + (Pablo Achard)
- Cerebellar LTD and Pattern Recognition by Purkinje Cells + (Volker Steuber)
- Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation + (Bart P. Vos)
- The lac repressor displays facilitated diffusion in living cells + (Petter Hammar)
- Dynamics and memory of heterochromatin in living cells + (Nathaniel A. Hathaway)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Neural network computation with DNA strand displacement cascades + (Lulu Qian)
- Computation with finite stochastic chemical reaction networks + (David Soloveichik)
- DNA as a universal substrate for chemical kinetics (Extended Abstract) + (David Soloveichik)
- Enzyme-free nucleic acid logic circuits + (Georg Seelig)
- Enzyme-free nucleic acid dynamical systems + (Niranjan Srinivas)
- Construction of an in vitro bistable circuit from synthetic transcriptional switches + (Jongmin Kim)
- Control of DNA strand displacement kinetics using toehold exchange + (David Yu Zhang)
- Efficient turing-universal computation with DNA polymers + (Lulu Qian)
- Synthetic in vitro transcriptional oscillators + (Jongmin Kim)
- Verifying chemical reaction network implementations: A pathway decomposition approach + (Seung Woo Shin)
- Realization of a feedback controlled flashing ratchet + (Benjamin J. Lopez)
- Entropy production of cyclic population dynamics + (Benjamin Andrae)
- Brownian motion: A paradigm of soft matter and biological physics + (Erwin Frey)
- Extinction in neutrally stable stochastic Lotka-Volterra models + (Alexander Dobrinevski)
- Synthetic molecular motors and mechanical machines + (Euan R. Kay)