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From Thermodynamics of Computation
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List of results
- Holographic Second Laws of Black Hole Thermodynamics + (Alice Bernamonti)
- High nucleosome occupancy is encoded at human regulatory sequences + (Desiree Tillo)
- Construction of an in vitro bistable circuit from synthetic transcriptional switches + (Jongmin Kim)
- Synthetic in vitro transcriptional oscillators + (Jongmin Kim)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator + (Maximilian Weitz)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Seflab: A lab for measuring software energy footprints + (Miguel A. Ferreira)
- On the origin of modular variation + (Hod Lipson)
- Comparison of work fluctuation relations + (Jordan Horowitz)
- Thermodynamics with continuous information flow + (Jordan M. Horowitz)
- Thermodynamic Costs of Information Processing in Sensory Adaptation + (Pablo Sartori)
- Nonequilibrium detailed fluctuation theorem for repeated discrete feedback + (Jordan M. Horowitz)
- Second-law-like inequalities with information and their interpretations + (Jordan M. Horowitz)
- Human neoteny revisited: The case of synaptic plasticity + (Enric Bufill)
- Non-equilibrium work relations + (Jorge Kurchan)
- Fluctuation-dissipation theorems and entropy production in relaxational systems + (Leticia F. Cugliandolo)
- Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics + (Leticia F. Cugliandolo)
- A fluctuation theorem for non-equilibrium relaxational systems driven by external forces + (Francesco Zamponi)
- Lower bound on the precision of transcriptional regulation and why facilitated diffusion can reduce noise in gene expression + (Joris Paijmans)
- The berg-purcell limit revisited + (Kazunari Kaizu)
- Compendium of the Foundations of Classical Statistical Physics + (Jos Uffink)
- Failure of the work-hamiltonian connection for free-energy calculations + (J. Miguel Rubi)
- Measurement of work in single-molecule pulling experiments + (Alessandro Mossa)
- Network modelling methods for FMRI + (Stephen M. Smith)
- Could information theory provide an ecological theory of sensory processing? + (Joseph J. Atick)
- What Does the Retina Know about Natural Scenes? + (Joseph J. Atick)
- Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study + (Mark A. Danielson)
- Bacterial chemoreceptors: high-performance signaling in networked arrays + (Gerald L. Hazelbauer)
- Analyzing friction forces with the Jarzynski equality + (Ronen Berkovich)
- Run-time exploitation of application dynamism for energy-efficient exascale computing (READEX) + (Yury Oleynik)
- The chromatin code of fungal secondary metabolite gene clusters + (Agnieszka Gacek)
- Transfer entropy and transient limits of computation + (Mikhail Prokopenko)
- On thermodynamic interpretation of transfer entropy + (Mikhail Prokopenko)
- Resurrecting ancient genes: Experimental analysis of extinct molecules + (Joseph W. Thornton)
- Free energy transduction in a chemical motor model + (Josh E. Baker)
- Data Center Efficiency Assessment + (Pierre Delforge)
- Prevalence of epistasis in the evolution of influenza A surface proteins + (Sergey Kryazhimskiy)
- On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution + (Prajwal Raj Kafle)
- Elements of Information Theory + (Thomas M. Cover)
- Neurophysiology of the BOLD fMRI Signal in Awake Monkeys + (Nikos K. Logothetis)
- Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic + (Saed G Younis)
- Criticism of Feynman’s analysis of the ratchet as an engine + (Juan M. R. Parrondo)
- Thermodynamics of information + (Juan M.R. Parrondo)
- Thermodynamic reversibility in feedback processes + (Jordan M. Horowitz)
- The Szilard engine revisited: Entropy, macroscopic randomness, and symmetry breaking phase transitions + (Juan M.R. Parrondo)
- Imitating chemical motors with optimal information motors + (Jordan M. Horowitz)
- Designing optimal discrete-feedback thermodynamic engines + (Jordan M. Horowitz)
- Optimizing non-ergodic feedback engines + (Jordan M. Horowitz)
- Thermodynamics: A stirling effort + (Jordan M. Horowitz)
- Intermittent Transcription Dynamics for the Rapid Production of Long Transcripts of High Fidelity + (Martin Depken)
- Feedback control in a collective flashing ratchet + (Francisco J. Cao)
- Profiling a Warehouse-Scale Computer + (Svilen Kanev)
- Quantum work and the thermodynamic cost of quantum measurements + (Sebastian Deffner)
- Genome sizes and the benford distribution + (James L. Friar)
- Fluctuations and response in a non-equilibrium micron-sized system + (Juan Ruben Gomez-Solano)
- Local potential connectivity in cat primary visual cortex + (Armen Stepanyants)
- How Much the Eye Tells the Brain + (Kristin Koch)
- The anatomical distance of functional connections predicts brain network topology in health and schizophrenia + (Aaron F. Alexander-Bloch)
- Functional nucleic acid sensors + (Juewen Liu)
- Energy use constrains brain information processing + (Julia J. Harris)
- Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication + (Peter Sarkies)
- Mapping out-of-equilibrium into equilibrium in one-dimensional transport models + (Julien Tailleur)
- Brain anatomical network and intelligence + (Yonghui Li)
- Posterior probability and fluctuation theorem in stochastic processes + (Jun Ohkubo)
- Noncyclic and nonadiabatic geometric phase for counting statistics + (Jun Ohkubo)
- The stochastic pump current and the non-adiabatic geometrical phase + (Jun Ohkubo)
- Readers of histone modifications + (Miyong Yun)
- Heat engine driven by purely quantum information + (Jung Jun Park)
- Experimental test of the quantum Jarzynski equality with a trapped-ion system + (Shuoming An)
- Revealing modular architecture of human brain structural networks by using cortical thickness from MRI + (Zhang J. Chen)
- A model for transmission of the H3K27me3 epigenetic mark + (Klaus H. Hansen)
- Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior + (Michael D. Fox)
- Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation + (Shawn K. Desai)
- Reachability bounds for chemical reaction networks and strand displacement systems + (Anne Condon)
- Less haste, less waste: On recycling and its limits in strand displacement systems + (Anne Condon)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Quantum probabilities from quantum entanglement: Experimentally unpacking the Born rule + (Jérémie Harris)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Small modulation of ongoing cortical dynamics by sensory input during natural vision + (József Fiser)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)
- Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations + (Mark A. Lever)
- Combined analog and action potential coding in hippocampal mossy fibers + (Henrik Alle)
- Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations + (Jörn Niessing)
- A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb + (Ana Raquel Pengelly)
- Functional brain network efficiency predicts intelligence + (Nicolas Langer)
- Fluctuation-preserving coarse graining for biochemical systems + (Bernhard Altaner)
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models + (Bernhard Altaner)
- Insect olfactory receptors. + (J. Boeckh)
- Helical logic + (Ralph C. Merkle)
- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State + (J. R. Gomez-Solano)
- Optimal Process Paths for Endoreversible Systems + (K. H. Hoffmann)
- Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose + (D. M. Bier)
- Experimental test of environment-assisted invariance + (L. Vermeyden)
- Classical and quantum limitations on energy consumption in computation + (K. K. Likharev)
- Size at birth, postnatal growth and risk of obesity + (K. K. Ong)
- Weight consistency specifies regularities of macaque cortical networks + (N. T. Markov)
- Generalised Einstein relation for hot Brownian motion + (D. Chakraborty)
- Thermoelectric efficiency at maximum power in a quantum dot + (K. Lindenberg)
- Finite-time thermodynamics for a single-level quantum dot + (R. Kawai)
- Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport + (T. Chou)
- Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor + (A. W.C. Lau)
- Fluctuation theorem for the flashing ratchet model of molecular motors + (D. Lacoste)
- Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins + (M. Lachner)
- Quantum entropy production as a measure of irreversibility + (I. Callens)
- Molecular kinetic analysis of a finite-time Carnot cycle + (Y. Izumida)
- Onsager coefficients of a Brownian Carnot cycle + (Y. Izumida)
- Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection + (X. D. Shang)
- Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits + (O. Sarbishei)
- Bidirectional single-electron counting and the fluctuation theorem + (Y. Utsumi)
- Nanoscale heat engine beyond the carnot limit + (J. Roßnagel)
- Observation of the Kibble-Zurek scaling law for defect formation in ion crystals + (S. Ulm)
- Generalization of the second law for a transition between nonequilibrium states + (K. Takara)
- Generalization of the second law for a nonequilibrium initial state + (H. H. Hasegawa)
- Statistics of entropy production in linearized stochastic Systems + (K. Turitsyn)
- Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise + (N. Kumar)
- Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard + (T. Gao)
- Probabilistic mapping and volume measurement of human primary auditory cortex + (J. Rademacher)
- Inhibition and Brain Work + (György Buzsáki)
- Quantifying noise levels of intercellular signals + (Kai Wang)
- A fast and elitist multiobjective genetic algorithm: NSGA-II + (Kalyanmoy Deb)
- Heat engine driven by purely quantum information + (Jung Jun Park)
- A Nonequilibrium Extension of the Clausius Heat Theorem + (Christian Maes)
- Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations + (Mark A. Lever)
- Pooled energy budgets: Resituating human energy -allocation trade-offs + (Karen L. Kramer)
- Chromatin proteins: Key responders to stress + (Karen T. Smith)
- Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild + (Nancy L. Barrickman)
- Costs of encephalization: the energy trade-off hypothesis tested on birds + (Karin Isler)
- Energetics and the evolution of human brain size + (Ana Navarrete)
- Phosphorylation and regulation of Raf by Akt (protein kinase B) + (Sven Zimmermann)
- Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru + (Isa Baud)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity + (Karl J. Indest)
- Network modelling methods for FMRI + (Stephen M. Smith)
- Jarzynski equality for quantum stochastic maps + (Alexey E. Rastegin)
- Operating on chromatin, a colorful language where context matters + (Kathryn E. Gardner)
- Experience-dependent rescaling of entorhinal grids + (Caswell Barry)
- TrxG and PcG proteins but not methylated histones remain associated with DNA through replication + (Svetlana Petruk)
- Stochastically driven single-level quantum dot: A nanoscale finite-time thermodynamic machine and its various operational modes + (Massimiliano Esposito)
- Entropy production as correlation between system and reservoir + (Massimiliano Esposito)
- An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation + (Katsuhiko Sato)
- Role of the polycomb protein EED in the propagation of repressive histone marks + (Raphael Margueron)
- Low-power digital signal processing using approximate adders + (Vaibhav Gupta)
- Development of large-scale functional brain networks in children + (Kaustubh Supekar)
- Quantum thermodynamics for a model of an expanding Universe + (Nana Liu)
- The berg-purcell limit revisited + (Kazunari Kaizu)
- Thermopower with broken time-reversal symmetry + (Keiji Saito)
- Generating function formula of heat transfer in harmonic networks + (Keiji Saito)
- Heat conduction in a three dimensional anharmonic crystal + (Keiji Saito)
- Thermodynamic bounds on efficiency for systems with broken time-reversal symmetry + (Giuliano Benenti)
- Histone modifications at human enhancers reflect global cell-type-specific gene expression + (Nathaniel D. Heintzman)
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome + (Nathaniel D. Heintzman)
- Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion + (Jonathan D. Power)
- Integral quantum fluctuation theorems under measurement and feedback control + (Ken Funo)
- Thermodynamic work gain from entanglement + (Ken Funo)
- Microscopic heat from the energetics of stochastic phenomena + (Ken Sekimoto)
- Unattainability of Carnot efficiency in the Brownian heat engine + (Tsuyoshi Hondou)
- Molecular taxonomy of major neuronal classes in the adult mouse forebrain + (Ken Sugino)
- Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints + (Anirikh Chakrabarti)
- Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements + (Jia Lee)
- Directing reprogramming to pluripotency by transcription factors + (Kenjiro Adachi)
- The olfactory bulb: Coding and processing of odor molecule information + (Kensaku Mori)
- Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex + (Yusuke Adachi)
- Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations + (Jörn Niessing)
- Chemical Reaction Networks for Computing Polynomials + (Sayed Ahmad Salehi)
- Asynchronous computation with molecular reactions + (Hua Jiang)
- Proactive Control of Approximate Programs + (Xin Sui)
- Matching is as easy as matrix inversion + (Ketan Mulmuley)
- A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling + (Kevin J. Nowka)
- Energetic basis of brain activity: Implications for neuroimaging + (Robert G. Shulman)
- Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) + (Eric Cheng)
- Increasing utilization in modern warehouse-scale computers using Bubble-Up + (Jason Mars)
- Heterochromatin formation involves changes in histone modifications over multiple cell generations + (Yael Katan-Khaykovich)
- Higher coordination with less control-a result of information maximization in the sensorimotor loop + (Keyan Zahedi)
- An architecture for fault-tolerant computation with stochastic logic + (Weikang Qian)
- Stochastic functions using sequential logic + (Naman Saraf)
- Computation on stochastic bit streams digital image processing case studies + (Peng Li)
- Logical computation on stochastic bit streams with linear finite-state machines + (Peng Li)
- Experimental test of the quantum Jarzynski equality with a trapped-ion system + (Shuoming An)
- Design principles of a bacterial signalling network + (Markus Kollmann)
- Profiling a Warehouse-Scale Computer + (Svilen Kanev)
- The emergence of human uniqueness: Characters underlying behavioral modernity + (Kim Hill)
- Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans + (Robert Walker)
- Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states + (Ian B. Dodd)
- Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification + (Ian B. Dodd)
- A Simple Histone Code Opens Many Paths to Epigenetics + (Kim Sneppen)
- A field-theoretic approach to non-equilibrium work identities + (Kirone Mallick)
- Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex + (Claus Mathiesen)
- Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature + (Kirsten Martens)
- Intensive thermodynamic parameters in nonequilibrium systems + (Eric Bertin)
- Dependence of the fluctuation-Dissipation temperature on the choice of observable + (Kirsten Martens)
- Patterns and mechanisms of Ancestral Histone protein inheritance in Budding yeast + (Marta Radman-Livaja)
- Progressive methylation of ageing histones by Dot1 functions as a timer + (Dirk De Vos)
- Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injection + (Yasuo Kawaguchi)
- Stochastic energetics for non-Gaussian processes + (Kiyoshi Kanazawa)
- Convergence in the olfactory system: quantitative aspects of odour sensitivity + (Wim van Drongelen)
- A model for transmission of the H3K27me3 epigenetic mark + (Klaus H. Hansen)
- Reversible space equals deterministic space + (Klaus Jörn Lange)
- Brownian motion: A paradigm of soft matter and biological physics + (Erwin Frey)
- The Phi-Bot: A robot controlled by a slime mould + (Soichiro Tsuda)
- Fluidized granular medium as an instance of the fluctuation theorem + (Klebert Feitosa)
- Colloquium: The physics of Maxwell's demon and information + (Koji Maruyama)
- Bayesian integration in sensorimotor learning + (Konrad P. Körding)
- Observation of parity-time symmetry in optics + (Christian E. Rüter)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator + (Maximilian Weitz)
- Heat generation required by information erasure + (Kousuke Shizume)
- Alternative splicing in the nervous system: An emerging source of diversity and regulation + (Christopher J. Lee)
- Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements + (Amar Nath Gupta)
- Energy Aware Computing Through Probabilistic Switching: A Study of Limits + (Krishna V. Palem)
- Energy aware computing through probabilistic switching: A study of limits + (Krishna V. Palem)
- Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics + (Pinar Korkmaz)
- The entorhinal grid map is discretized + (Hanne Stensola)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- How Much the Eye Tells the Brain + (Kristin Koch)
- Construction of an in vitro bistable circuit from synthetic transcriptional switches + (Jongmin Kim)
- Consensus paper: The cerebellum's role in movement and cognition + (Leonard F. Koziol)
- Eulerian and lagrangian pictures of non-equilibrium diffusions + (Raphaël Chetrite)
- Refined Second Law of Thermodynamics for Fast Random Processes + (Erik Aurell)
- Influence of combinatorial histone modifications on antibody and effector protein recognition + (Stephen M. Fuchs)
- Noise stability of functions with low influences: Invariance and optimality + (Elchanan Mossel)
- Fluctuation theorem applied to F1-ATPase + (Kumiko Hayashi)