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From Thermodynamics of Computation
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List of results
- Silent synapses, LTP, and the indirect parallel-fibre pathway: Computational consequences of optimal cerebellar noise-processing + (John Porrill)
- The topology of energy hypersurfaces III. The fundamental group of reaction mechanisms on potential energy hypersurfaces + (Paul G. Mezey)
- Response and habituation of the human amygdala during visual processing of facial expression + (Hans C. Breiter)
- Optimal estimates of free energies from multistate nonequilibrium work data + (Paul Maragakis)
- Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise + (Paul Maragakis)
- Relationships between gene expression and brain wiring in the adult rodent brain + (Leon French)
- A quantitative analysis of sniffing strategies in rats performing odor detection tasks + (Steven L. Youngentob)
- Time and space bounds for reversible simulation + (Harry Buhrman)
- Solution of a 20-variable 3-SAT problem on a DNA computer + (Ravinderjit S. Braich)
- Lower bounds for resolution and cutting plane proofs and monotone computations + (Pavel Pudlák)
- Cube v4: From performance report explorer to performance analysis tool + (Pavel Saviankou)
- The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses + (Païkan Marcaggi)
- Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI + (Zhang J. Chen)
- Revealing modular architecture of human brain structural networks by using cortical thickness from MRI + (Zhang J. Chen)
- Computation on stochastic bit streams digital image processing case studies + (Peng Li)
- A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic + (Peng Li)
- Logical computation on stochastic bit streams with linear finite-state machines + (Peng Li)
- Programming biomolecular self-assembly pathways + (Peng Yin)
- Programming DNA tube circumferences + (Peng Yin)
- Criticism of Feynman’s analysis of the ratchet as an engine + (Juan M. R. Parrondo)
- Run-time exploitation of application dynamism for energy-efficient exascale computing (READEX) + (Yury Oleynik)
- Correlated evolution of nearby residues in drosophilid proteins + (Benjamin Callahan)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina + (Peter B. Detwiler)
- The quiet revolution of numerical weather prediction + (Peter Bauer)
- Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality + (Daniel K. West)
- The limits of chemosensation vary across dimensions + (Brendan A. Bicknell)
- Analyzing molecular reaction networks: From pathways to chemical organizations + (Christoph Kaleta)
- Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil + (T. Ivo Chao)
- The cost of cortical computation + (Peter Lennie)
- Drivers of bacterial maintenance and minimal energy requirements + (Peter M. van Bodegom)
- Targeting olfaction + (Peter Mombaerts)
- Brownian motors: Noisy transport far from equilibrium + (Peter Reimann)
- Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication + (Peter Sarkies)
- Synergism between different germinant receptors in the germination of Bacillus subtilis spores + (Xuan Yi)
- Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity + (Karl J. Indest)
- Molecular taxonomy of major neuronal classes in the adult mouse forebrain + (Ken Sugino)
- Observable dependence of fluctuation-dissipation relations and effective temperatures + (Suzanne Fielding)
- An intermediate level of abstraction for computational systems chemistry + (Jakob L. Andersen)
- Transitions from Nonliving to Living Matter + (Steen Rasmussen)
- Defining genes: A computational framework + (Sonja J. Prohaska)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete + (Jakob L. Andersen)
- TRNAdb 2009: Compilation of tRNA sequences and tRNA genes + (Frank Jühling)
- Innovation in gene regulation: The case of chromatin computation + (Sonja J. Prohaska)
- Design of a trichromatic cone array + (Patrick Garrigan)
- Receptive fields and functional architecture in the retina + (Vijay Balasubramanian)
- How Much the Eye Tells the Brain + (Kristin Koch)
- Retina + (Peter Sterling)
- Chromatin and epigenetic regulation of pre-mrna processing + (Seth J. Brown)
- Pooled energy budgets: Resituating human energy -allocation trade-offs + (Karen L. Kramer)
- Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis + (Robert H. Wood)
- Fluctuation theorems: Work is not an observable + (Peter Talkner)
- Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics) + (Michele Campisi)
- Fluctuation theorem for arbitrary open quantum systems + (Michele Campisi)
- Broken symmetries and the masses of gauge bosons + (Peter W. Higgs)
- The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution + (Leslie C. Aiello)
- The anatomical distance of functional connections predicts brain network topology in health and schizophrenia + (Aaron F. Alexander-Bloch)
- Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator + (Y. Apertet)
- Small-world networks and functional connectivity in Alzheimer's disease + (C. J. Stam)
- Article for analog vector algebra computation + (Allen P. Mills)
- Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain + (Andrew J. Bannister)
- Optimum protocol for fast-switching free-energy calculations + (Philipp Geiger)
- Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions + (Petr Chvosta)
- Thermodynamics of a physical model implementing a Maxwell demon + (Philipp Strasberg)
- Asymmetrically modified nucleosomes + (Philipp Voigt)
- Role of the polycomb protein EED in the propagation of repressive histone marks + (Raphael Margueron)
- The minimal work cost of information processing + (Philippe Faist)
- Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell + (Nicolas Brunel)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? + (Harald Oberhofer)
- Untangling Complex Systems: A Grand Challenge for Science + (Pier Luigi Gentili)
- Soft computing: the convergence of emerging reasoning technologies + (Piero P. Bonissone)
- Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury + (Vincent Degos)
- Data Center Efficiency Assessment + (Pierre Delforge)
- Fluctuation theorem for currents and Schnakenberg network theory + (David Andrieux)
- Fluctuation theorem for nonequilibrium reactions + (Pierre Gaspard)
- Fluctuation theorem for transport in mesoscopic systems + (David Andrieux)
- Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors + (David Andrieux)
- Network and thermodynamic conditions for a single macroscopic current fluctuation theorem + (David Andrieux)
- A fluctuation theorem for currents and non-linear response coefficients + (David Andrieux)
- Neuron-glia metabolic coupling and plasticity + (Pierre J. Magistretti)
- Probability density functions of work and heat near the stochastic resonance of a colloidal particle + (Alberto Imparato)
- Reversible space equals deterministic space + (Klaus Jörn Lange)
- Entropic tension in crowded membranes + (Martin Lindén)
- Thermodynamics of Computational Copying in Biochemical Systems + (Thomas E. Ouldridge)
- Thermodynamics of computational copying in biochemical systems + (Thomas E. Ouldridge)
- Fundamental limits on sensing chemical concentrations with linear biochemical networks + (Christopher C. Govern)
- Energy dissipation and noise correlations in biochemical sensing + (Christopher C. Govern)
- Mutual information between input and output trajectories of biochemical networks + (Filipe Tostevin)
- The berg-purcell limit revisited + (Kazunari Kaizu)
- Lower bound on the precision of transcriptional regulation and why facilitated diffusion can reduce noise in gene expression + (Joris Paijmans)
- Rare switching events in non-stationary systems + (Nils B. Becker)
- Forward flux sampling for rare event simulations + (Rosalind J. Allen)
- Effect of feedback on the fidelity of information transmission of time-varying signals + (Wiet Hendrik De Ronde)
- Fundamental Costs in the Production and Destruction of Persistent Polymer Copies + (Thomas E. Ouldridge)
- Role of spatial averaging in the precision of gene expression patterns + (Thorsten Erdmann)
- Diffusion of transcription factors can drastically enhance the noise in gene expression + (Jeroen S. Van Zon)
- Optimal Prediction by Cellular Signaling Networks + (Nils B. Becker)
- On the connection between computational and biochemical measurement + (Thomas E Ouldridge)
- Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics + (Pinar Korkmaz)
- Using profile information to assist classic code optimizations + (Pohua P. Chang)
- How the nature of an observation affects single-trajectory entropies + (Ying Li)
- Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) + (Eric Cheng)
- Stretching the limits of clock-gating efficiency in server-class processors + (Hans Jacobson)
- On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution + (Prajwal Raj Kafle)
- The ManyBugs and IntroClass Benchmarks for Automated Repair of C Programs + (Claire Le Goues)
- The second wave of synthetic biology: From modules to systems + (Priscilla E.M. Purnick)
- Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation + (Ara Kocharyan)
- The lac repressor displays facilitated diffusion in living cells + (Petter Hammar)
- Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases + (Punyabrata Pradhan)
- Nonequilibrium fluctuation theorems in the presence of local heating + (Punyabrata Pradhan)
- Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? + (Purnananda Guptasarma)
- Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase + (Qi Wang)
- Theory of Nonequilibrium Steady States + (D-Q Jiang)
- Understanding quantum work in a quantum many-body system + (Qian Wang)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification + (Minjia Tan)
- Covalent modifications of histones during mitosis and meiosis + (Dazhong Xu)
- Uncovering intrinsic modular organization of spontaneous brain activity in humans + (Yong He)
- Reviews of nonlinear dynamics and complexity Nonequilibrium Statistical Physics of Small Systems: Fluctuation Relations and Beyond (Weinheim: Wiley-VCH) + (R Klages)
- Precis of The Emperor's New Mind + (R Penrose)
- Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states + (R. A. Blythe)
- The quantum open system as a model of the heat engine + (R. Alicki)
- Cerebellar LTD and Pattern Recognition by Purkinje Cells + (Volker Steuber)
- Experimental implementation of a nonthermalizing quantum thermometer + (C. Raitz)
- The superfamily of heme-copper respiratory oxidases + (J. A. Garcia-Horsman)
- Reversible electronic logic using switches + (R. C. Merkle)
- On the symmetry of current probability distributions in jump processes + (A. C. Barato)
- Entropy production and fluctuation relations for a KPZ interface + (A. C. Barato)
- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State + (J. R. Gomez-Solano)
- Ueber die bewegende Kraft der Wärme und die Gesetze, welche sich daraus für die Wärmelehre selbst ableiten lassen + (R. Clausius)
- Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose + (D. M. Bier)
- Histone modifications at human enhancers reflect global cell-type-specific gene expression + (Nathaniel D. Heintzman)
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome + (Nathaniel D. Heintzman)
- Predictive information and explorative behavior of autonomous robots + (N. Ay)
- Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard + (T. Gao)
- The fundamental plan of the retina + (R. H. Masland)
- Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty + (J. M. Tanner)
- Macromolecular crowding: An important but neglected aspect of the intracellular environment + (R. J. Ellis)
- Fifty years of the VSEPR model + (R. J. Gillespie)
- Fluctuation theorems for stochastic dynamics + (R. J. Harris)
- BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study + (R. J. Silverwood)
- Efficiency of Brownian motors in terms of entropy production rate + (Min Qian)
- General mass action kinetics + (F. Horn)
- Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport + (T. Chou)
- Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states + (R. K.P. Zia)
- A possible classification of nonequilibrium steady states + (B. Schmittmann)
- Finite-time thermodynamics for a single-level quantum dot + (R. Kawai)
- Jarzynski equality for the Jepsen gas + (I. Bena)
- Binary Multiplication with PN Sequences + (P. K. Gupta)
- Experimental test of environment-assisted invariance + (L. Vermeyden)
- Operation modes of the molecular motor kinesin + (S. Liepelt)
- Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes + (S. Liepelt)
- Hydrodynamics and the fluctuation theorem + (M. Belushkin)
- Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow. + (B. R. Duling)
- Principles of Population Genetics. + (R. M. Cormack)
- Number of parallel fiber synapses on an individual Purkinje cell in the cerebellum of the rat + (R. M.A. Napper)
- Nonequilibrium statistical mechanics of shear flow: Invariant quantities and current relations + (R. M.L. Evans)
- Invariant quantities in shear flow + (R. M.L. Evans)
- Optimum walking techniques for idealized animals + (A. S. Jayes)
- Nonequilibrium steady-state fluctuations in actively cooled resonators + (M. Bonaldi)
- Incremental growth tables: Supplementary to previously published charts + (R. N. Baumgartner)
- Reversible Quantum Brownian Heat Engines for Electrons + (T. E. Humphrey)
- Observation of the Kibble-Zurek scaling law for defect formation in ion crystals + (S. Ulm)
- Jarzynski equation for a simple quantum system: Comparing two definitions of work + (A. Engel)
- Zur Quantentheorie der Molekeln + (M. Born)
- Ramanujan graphs + (A. Lubotzky)
- Invariant visual representation by single neurons in the human brain + (R. Quian Quiroga)
- Weight consistency specifies regularities of macaque cortical networks + (N. T. Markov)
- Of dreaming and wakefulness + (R. R. Llinás)
- Experimental implementation of a nonthermalizing quantum thermometer + (C. Raitz)
- Dynamical reconnection and stability constraints on cortical network architecture + (P. A. Robinson)
- Stochastic thermodynamics for linear kinetic equations + (C. Van Den Broeck)
- Extension of the fluctuation theorem + (R. van Zon)
- Stationary and transient work-fluctuation theorems for a dragged Brownian particle + (R. van Zon)
- Extended heat-fluctuation theorems for a system with deterministic and stochastic forces + (R. van Zon)
- Human neoteny revisited: The case of synaptic plasticity + (Enric Bufill)
- Work distribution functions for hysteresis loops in a single-spin system + (Rahul Marathe)
- Cooling classical particles with a microcanonical szilard engine + (Rahul Marathe)
- Synthetic analog computation in living cells + (Ramiz Daniel)
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing + (Gunnar Schotta)
- Physics of Self-Organization and Evolution + (Rainer Feistel)
- Experimental demonstration of a latch in clocked quantum-dot cellular automata + (Alexei O. Orlov)
- An efficient graph theory based method to identify every minimal reaction set in a metabolic network + (Sudhakar Jonnalagadda)
- Introduction to Automata Theory, Languages, and Computation + (John E. Hopcroft)
- Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations + (Jörn Niessing)
- Higher coordination with less control-a result of information maximization in the sensorimotor loop + (Keyan Zahedi)
- Signal focusing through active transport + (Aljaž Godec)
- Helical logic + (Ralph C. Merkle)
- Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity + (Ahalya Viswanathan)
- Self-Organization in a Perceptual Network + (Ralph Linsker)
- Synthetic mechanochemical molecular swimmer + (Ramin Golestanian)
- Observation of parity-time symmetry in optics + (Christian E. Rüter)
- The brain's default network: Anatomy, function, and relevance to disease + (Randy L. Buckner)
- Response and habituation of the human amygdala during visual processing of facial expression + (Hans C. Breiter)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)
- Memory erasure in small systems + (Raoul Dillenschneider)
- Role of the polycomb protein EED in the propagation of repressive histone marks + (Raphael Margueron)
- Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale + (Raphaël Chetrite)
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes + (Andre Cardoso Barato)
- Eulerian and lagrangian pictures of non-equilibrium diffusions + (Raphaël Chetrite)
- Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states + (Gatien Verley)
- Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain + (Gatien Verley)
- Chromatin structure and the inheritance of epigenetic information + (Raphaël Margueron)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Solution of a 20-variable 3-SAT problem on a DNA computer + (Ravinderjit S. Braich)
- Structure and function of a human TAF(II)250 double bromodomain module + (Raymond H. Jacobson)
- Neurophysiological architecture of functional magnetic resonance images of human brain + (Raymond Salvador)
- Non-equilibrium thermodynamics and topology of currents + (Vladimir Y. Chernyak)
- Analog Computation by DNA Strand Displacement Circuits + (Tianqi Song)
- Energy conversion by molecular motors coupled to nucleotide hydrolysis + (Reinhard Lipowsky)
- Universal aspects of the chemomechanical coupling for molecular motors + (Reinhard Lipowsky)
- Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions + (Reinhard Lipowsky)
- Transient fluctuation relations for time-dependent particle transport + (Alexander Altland)
- Fluctuation relations and rare realizations of transport observables + (Alexander Altland)
- Epigenetics in alternative pre-mRNA splicing + (Reini F. Luco)
- The thermodynamic meaning of negative entropy + (Lídia Del Rio)
- The minimal work cost of information processing + (Philippe Faist)
- Energy use constrains brain information processing + (Julia J. Harris)
- Modular and hierarchically modular organization of brain networks + (David Meunier)
- On the solution to numerical problems using stochastic arithmetic + (René Alt)
- Computation in networks of passively mobile finite-state sensors + (Dana Angluin)
- Mapping the structural core of human cerebral cortex + (Patric Hagmann)
- Superfamilies of Evolved and Designed Networks + (Ron Milo)
- The anatomical distance of functional connections predicts brain network topology in health and schizophrenia + (Aaron F. Alexander-Bloch)
- Quantifying noise levels of intercellular signals + (Kai Wang)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Histone modifications at human enhancers reflect global cell-type-specific gene expression + (Nathaniel D. Heintzman)
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome + (Nathaniel D. Heintzman)
- Improving fast-switching free energy estimates by dynamical freezing + (Paolo Nicolini)
- Glucans monomer-exchange dynamics as an open chemical network + (Riccardo Rao)
- Correlated evolution of nearby residues in drosophilid proteins + (Benjamin Callahan)
- Representations of Odor in the Piriform Cortex + (Dan D. Stettler)
- RNA sequence analysis using covariance models + (Sean R. Eddy)
- Second-order selection for evolvability in a large Escherichia coli population + (Robert J. Woods)
- The evolutionary origin of complex features + (Richard E. Lenski)
- Genome evolution and adaptation in a long-term experiment with Escherichia coli + (Jeffrey E. Barrick)
- Nonequilibrium thermodynamics of stochastic systems with odd and even variables + (Richard E. Spinney)
- Entropy production in full phase space for continuous stochastic dynamics + (Richard E. Spinney)
- Efficient checking of computations + (Richard J. Lipton)
- Reducibility among combinatorial problems + (Richard M. Karp)
- Quantum mechanical computers + (Richard P. Feynman)
- Influence of combinatorial histone modifications on antibody and effector protein recognition + (Stephen M. Fuchs)
- Stretching the limits of clock-gating efficiency in server-class processors + (Hans Jacobson)
- Programmable and autonomous computing machine made of biomolecules + (Yaakov Benenson)
- Programming DNA tube circumferences + (Peng Yin)
- Novel algorithms for fast statistical analysis of scaled circuits + (Amith Singhee)
- Entropic tension in crowded membranes + (Martin Lindén)
- Statistical mechanics of Monod-Wyman-Changeux (MWC) models + (Sarah Marzen)
- Holographic Second Laws of Black Hole Thermodynamics + (Alice Bernamonti)
- Stochastic arithmetic implementations of neural networks with in situ learning + (Jeffrey A. Dickson)
- Increased accuracy of ligand sensing by receptor diffusion on cell surface + (Gerardo Aquino)
- Maximum likelihood and the single receptor + (Robert G. Endres)
- Accuracy of direct gradient sensing by cell-surface receptors + (Robert G. Endres)
- Unraveling Adaptation in Eukaryotic Pathways: Lessons from Protocells + (Giovanna de Palo)
- Memory improves precision of cell sensing in fluctuating environments + (Gerardo Aquino)
- Energetic basis of brain activity: Implications for neuroimaging + (Robert G. Shulman)
- Path integral formulation of general diffusion processes + (Robert Graham)
- Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis + (Robert H. Wood)
- Optimizing Google's warehouse scale computers: The NUMA experience + (Lingjia Tang)
- Increasing utilization in modern warehouse-scale computers using Bubble-Up + (Jason Mars)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- The work-Hamiltonian connection and the usefulness of the Jarzynski equality for free energy calculations + (Eric N. Zimanyi)
- Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions + (Alexander J. Ruthenburg)
- Nucleosome organization in the Drosophila genome + (Travis N. Mavrich)
- Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes + (Robert Penchovsky)
- Programmable energy landscapes for kinetic control of DNA strand displacement + (Thomas E. Ouldridge)
- Quantum probabilities from quantum entanglement: Experimentally unpacking the Born rule + (Jérémie Harris)
- Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans + (Robert Walker)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Nucleosomes are well positioned in exons and carry characteristic histone modifications + (Robin Andersson)
- Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain + (Andrew J. Bannister)
- Experience-dependent rescaling of entorhinal grids + (Caswell Barry)
- Histone Segregation on Replicating Chromatinâ + (Vaughn Jackson)
- Histone Segregation on Replicating Chromatin† + (Vaughn Jackson)
- TRNAdb 2009: Compilation of tRNA sequences and tRNA genes + (Frank Jühling)
- The human connectome: A structural description of the human brain + (Olaf Sporns)
- Identification and classification of hubs in brain networks + (Olaf Sporns)
- Motion out of noisy states + (Rolf Landauer)
- The physical nature of information + (Rolf Landauer)
- Irreversibility and Heat Generation in the Computing Process + (Rolf Landauer)
- Dissipation and noise immunity in computation and communication + (Rolf Landauer)
- Minimal energy requirements in communication + (Rolf Landauer)
- Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life. + (Linus Pauling)
- Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation + (Michael A. Savageau)
- The second wave of synthetic biology: From modules to systems + (Priscilla E.M. Purnick)
- Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit + (Ronald Benjamin)
- Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease + (Omar Haq)
- Analyzing friction forces with the Jarzynski equality + (Ronen Berkovich)
- How Much the Eye Tells the Brain + (Kristin Koch)
- A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation + (Stefan Schuster)
- Forward flux sampling for rare event simulations + (Rosalind J. Allen)
- Statistical physics of a model binary genetic switch with linear feedback + (Paolo Visco)
- Refined Second Law of Thermodynamics for Fast Random Processes + (Erik Aurell)
- Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations + (Mark A. Lever)
- Performance of quantum Otto refrigerators with squeezing + (Rui Long)
- Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements + (Jia Lee)
- Sampling adsorbing staircase walks using a new Markov chain decomposition method + (Russell A. Martin)
- Derandomizing polynomial identity tests means proving circuit lower bounds + (Valentine Kabanets)
- Noise stability of functions with low influences: Invariance and optimality + (Elchanan Mossel)
- Fluctuation theorem applied to F1-ATPase + (Kumiko Hayashi)
- Petrosyan A 2010 Fluctuations in out-of-equilibrium systems: from theory to experiment J. Stat + (S Ciliberto)
- Experimental verification of Landauer's principle in erasure of nanomagnetic memory bits + (J Hong)
- Energy as a constraint on the coding and processing of sensory information + (S. B. Laughlin)
- Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera + (S. B. Laughlin)
- Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies + (D. Collin)
- Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard + (T. Gao)
- Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces + (Wei Min)
- Work fluctuations in a nematic liquid crystal + (S. Joubaud)
- Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows + (S. Ciliberto)
- Fluctuations of the total entropy production in stochastic systems + (S. Joubaud)
- Work and dissipation fluctuations near the stochastic resonance of a colloidal particle + (P. Jop)
- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State + (J. R. Gomez-Solano)
- Nonequilibrium fluctuations in a resistor + (N. Garnier)
- Heat fluctuations in a nonequilibrium bath + (J. R. Gomez-Solano)
- Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models + (F. Douarche)
- An experimental test of the Jarzynski equality in a mechanical experiment + (F. Douarche)
- Steady-state fluctuation relations for systems driven by an external random force + (J. R. Gomez-Solano)
- Work fluctuation theorems for harmonic oscillators + (F. Douarche)
- Using information theory to search for co-evolving residues in proteins + (L. C. Martin)
- Quantum fluctuation theorems in the strong damping limit + (S. Deffner)
- Electromagnetic gauge-freedom and work + (A. E. Allahverdyan)
- Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths + (B. Altaner)
- Total entropy production fluctuation theorems in a nonequilibrium time-periodic steady state + (S. Lahiri)
- Robustness in bacterial chemotaxis + (U. Alon)
- Robustness in simple biochemical networks + (N. Barkai)
- Operation modes of the molecular motor kinesin + (S. Liepelt)
- Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes + (S. Liepelt)
- Fluctuations and irreversible processes + (L. Onsager)
- Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation + (Y. Aharonov)
- Effective temperatures of a heated Brownian particle + (L. Joly)
- Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements + (L. Fusco)
- Brain growth, life history, and cognition in primate and human evolution + (S. R. Leigh)
- Active membrane fluctuations studied by micropipet aspiration + (J. B. Manneville)
- Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins + (M. Lachner)
- Steady-state thermodynamics of Langevin systems + (T. Hatano)
- Optimal Process Paths for Endoreversible Systems + (K. H. Hoffmann)
- Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates + (S. Schuler)
- Measurement of stochastic entropy production + (C. Tietz)
- Moments of work in the two-point measurement protocol for a driven open quantum system + (S. Suomela)
- Dissipation and lag in irreversible processes + (S. Vaikuntanathan)
- Feynman's ratchet optimization: Maximum power and maximum efficiency regimes + (S. Velasco)
- Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification + (Minjia Tan)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Fluctuation relations and coarse-graining + (Saar Rahav)
- Molecular taxonomy of major neuronal classes in the adult mouse forebrain + (Ken Sugino)
- Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic + (Saed G Younis)
- Tracking forecast memories for stochastic decoding + (Saeed Sharifi Tehrani)
- Work probability distribution and tossing a biased coin + (Arnab Saha)
- Chemical sensing by nonequilibrium cooperative receptors + (Monica Skoge)
- Pseudorandomness and average-case complexity via uniform reductions + (Luca Trevisan)
- Unbalanced expanders and randomness extractors from parvaresh-vardy codes + (Venkatesan Guruswami)
- The unified theory of pseudorandomness: guest column + (Salil Vadhan)
- TrxG and PcG proteins but not methylated histones remain associated with DNA through replication + (Svetlana Petruk)
- A fast and elitist multiobjective genetic algorithm: NSGA-II + (Kalyanmoy Deb)
- The TAU parallel performance system + (Sameer S. Shende)
- Grid cells generate an analog error-correcting code for singularly precise neural computation + (Sameet Sreenivasan)
- An analytical solution to the kinetics of breakable filament assembly + (Christopher A. Waudby)
- Defect and error tolerance in the presence of massive numbers of defects + (Melvin A. Breuer)
- Heat engine driven by purely quantum information + (Jung Jun Park)
- Quantum szilard engine + (Sang Wook Kim)
- Biomolecules under mechanical force + (Sanjay Kumar)
- Application of importance sampling to the computation of large deviations in nonequilibrium processes + (Anupam Kundu)
- Heat and work fluctuations for a harmonic oscillator + (Sanjib Sabhapandit)
- Large deviations of heat flow in harmonic chains + (Anupam Kundu)
- Work fluctuations for a harmonic oscillator driven by an external random force + (Sanjib Sabhapandit)
- On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution + (Prajwal Raj Kafle)
- Maximum work extraction and implementation costs for nonequilibrium Maxwell's demons + (Henrik Sandberg)
- Consensus paper: The cerebellum's role in movement and cognition + (Leonard F. Koziol)
- Measurement of work in single-molecule pulling experiments + (Alessandro Mossa)
- The hidden simplicity of biology + (Paul C.W. Davies)
- Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation + (Sarah A. Cepeda-Humerez)
- Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance + (Amy L. Bauernfeind)
- Stochastic equations in black hole backgrounds and non-equilibrium fluctuation theorems + (Satoshi Iso)
- Chemical Reaction Networks for Computing Polynomials + (Sayed Ahmad Salehi)
- Chromatin organization marks exon-intron structure + (Schraga Schwartz)
- Using profile information to assist classic code optimizations + (Pohua P. Chang)
- The Taxonomy Project + (Scott Federhen)
- Holevo's bound from a general quantum fluctuation theorem + (Dvir Kafri)
- Thermodynamic universality of quantum Carnot engines + (Bartłomiej Gardas)
- Quantum work distribution for a driven diatomic molecule + (Alison Leonard)
- Quantum work and the thermodynamic cost of quantum measurements + (Sebastian Deffner)
- Information processing and the second law of thermodynamics: An inclusive, Hamiltonian approach + (Sebastian Deffner)
- Quantum dynamical field theory for nonequilibrium phase transitions in driven open systems + (Jamir Marino)
- How much non-coding DNA do eukaryotes require? + (Sebastian E. Ahnert)
- Nonequilibrium energetics of a single F1-ATPase molecule + (Shoichi Toyabe)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- Prevalence of epistasis in the evolution of influenza A surface proteins + (Sergey Kryazhimskiy)
- Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport + (Alexander M. Berezhkovskii)
- Fluctuations and response in a non-equilibrium micron-sized system + (Juan Ruben Gomez-Solano)
- Probability density functions of work and heat near the stochastic resonance of a colloidal particle + (Alberto Imparato)
- Random-Pulse Machines + (Sergio T. Ribeiro)
- Chromatin and epigenetic regulation of pre-mrna processing + (Seth J. Brown)
- Information-theoretic approach to the study of control systems + (Hugo Touchette)
- Quantum Measurement Bounds beyond the Uncertainty Relations + (Vittorio Giovannetti)
- Ultimate physical limits to computation + (Seth Lloyd)
- Use of mutual information to decrease entropy: Implications for the second law of thermodynamics + (Seth Lloyd)
- Verifying chemical reaction network implementations: A pathway decomposition approach + (Seung Woo Shin)
- Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) + (Eric Cheng)
- A small world of neuronal synchrony + (Shan Yu)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina + (Peter B. Detwiler)
- Fluctuation theorems for quantum master equations + (Massimiliano Esposito)
- Quantum Extension of the Jarzynski Relation: Analogy with Stochastic Dephasing + (Shaul Mukamel)
- Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation + (Shawn K. Desai)
- Compiler optimization on instruction scheduling for low power + (Chingren Lee)
- Delayed stochastic decoding of LDPC codes + (Ali Naderi)
- Speeding up processing with approximation circuits + (Shih Lien Lu)