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Thermodynamics of Computation

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Revision as of 01:41, April 17, 2018

 Author nameSource nameYear
Elements of Information TheoryThomas M. Cover
Joy A. Thomas
Elements of Information Theory2005
Collective dynamics of 'small-world' networksDuncan J. Watts
Steven H. Strogatz
Nature1998
A fast and elitist multiobjective genetic algorithm: NSGA-IIKalyanmoy Deb
Amrit Pratap
Sameer Agarwal
T. Meyarivan
IEEE Transactions on Evolutionary Computation2002
Image quality assessment: From error visibility to structural similarityZhou Wang
Alan Conrad Bovik
Hamid Rahim Sheikh
Eero P. Simoncelli
IEEE Transactions on Image Processing2004
Translating the histone codeT. Jenuwein
C. D. Allis
Science2001
The brain's default network: Anatomy, function, and relevance to diseaseRandy L. Buckner
Jessica R. Andrews-Hanna
Daniel L. Schacter
Annals of the New York Academy of Sciences2008
On the nature of allosteric transitions: A plausible modelJacque Monod
Jeffries Wyman
Jean Pierre Changeux
Journal of Molecular Biology1965
Complex network measures of brain connectivity: Uses and interpretationsMikail Rubinov
Olaf Sporns
NeuroImage2010
Distributed hierarchical processing in the primate cerebral cortexDaniel J. Felleman
David C. Van Essen
Cerebral Cortex1991
Near-optimal signal recovery from random projections: Universal encoding strategies?Emmanuel J. Candes
Terence Tao
IEEE Transactions on Information Theory2006
Factor graphs and the sum-product algorithmFrank R. Kschischang
Brendan J. Frey
Hans Andrea Loeliger
IEEE Transactions on Information Theory2001
Neurophysiological investigation of the basis of the fMRI signalN. K. Logothetis
J. Pauls
M. Augath
T. Trinath
A. Oeltermann
Nature2001
Irreversibility and Heat Generation in the Computing ProcessRolf Landauer1961
Mammalian MAP kinase signalling cascadesL. Chang
M. Karin
Nature2001
Spurious but systematic correlations in functional connectivity MRI networks arise from subject motionJonathan D. Power
Kelly A. Barnes
Abraham Z. Snyder
Bradley L. Schlaggar
Steven E. Petersen
NeuroImage2012
A general method for numerically simulating the stochastic time evolution of coupled chemical reactionsDaniel T. GillespieJournal of Computational Physics1976
Real spectra in non-hermitian hamiltonians having PT symmetryCarl M. Bender
Stefan Boettcher
Physical Review Letters1998
Nonequilibrium equality for free energy differencesC. JarzynskiPhysical Review Letters1997
A synthetic oscillatory network of transcriptional regulatorsMichael B. Elowitz
Stanislas Leibier
Nature2000
Topology of cosmic domains and stringsT. W.B. KibbleJournal of Physics A: General Physics1976
Mapping the structural core of human cerebral cortexPatric Hagmann
Leila Cammoun
Xavier Gigandet
Reto Meuli
Christopher J. Honey
J. Van Wedeen
Olaf Sporns
PLoS Biology2008
Earth mover's distance as a metric for image retrievalYossi Rubner
Carlo Tomasi
Leonidas J. Guibas
International Journal of Computer Vision2000
Performance assessment of multiobjective optimizers: An analysis and reviewEckart Zitzler
Lothar Thiele
Marco Laumanns
Carlos M. Fonseca
Viviane Grunert Da Fonseca
IEEE Transactions on Evolutionary Computation2003
Broken symmetries and the masses of gauge bosonsPeter W. HiggsPhysical Review Letters1964
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary informationMichael Zuker
Patrick Stiegler
Nucleic Acids Research1981
A new polynomial-time algorithm for linear programmingN. KarmarkarCombinatorica1984
Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of pubertyJ. M. Tanner
R. H. Whitehouse
Archives of Disease in Childhood1976
Decoherence, einselection, and the quantum origins of the classicalWojciech Hubert ZurekReviews of Modern Physics2003
Selforganization of matter and the evolution of biological macromoleculesManfred EigenDie Naturwissenschaften1971
Sparse coding with an overcomplete basis set: A strategy employed by V1?Bruno A. Olshausen
David J. Field
Vision Research1997
Observation of parity-time symmetry in opticsChristian E. Rüter
Konstantinos G. Makris
Ramy El-Ganainy
Demetrios N. Christodoulides
Mordechai Segev
Detlef Kip
Nature Physics2010
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genomeNathaniel D. Heintzman
Rhona K. Stuart
Gary Hon
Yutao Fu
Christina W. Ching
R. David Hawkins
Leah O. Barrera
Sara Van Calcar
Chunxu Qu
Keith A. Ching
Wei Wang
Zhiping Weng
Roland D. Green
Gregory E. Crawford
Bing Ren
Nature Genetics2007
Synthetic molecular motors and mechanical machinesEuan R. Kay
David A. Leigh
Francesco Zerbetto
Angewandte Chemie - International Edition2007
Zur Quantentheorie der MolekelnM. Born
R. Oppenheimer
Annalen der Physik1927
Microstructure of a spatial map in the entorhinal cortexTorkel Hafting
Marianne Fyhn
Sturla Molden
May Britt Moser
Edvard I. Moser
Nature2005
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteinsM. Lachner
D. O'Carroll
S. Rea
K. Mechtler
T. Jenuwein
Nature2001
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domainAndrew J. Bannister
Philip Zegerman
Janet F. Partridge
Eric A. Miska
Jean O. Thomas
Robin C. Allshire
Tony Kouzarides
Nature2001
What we can do and what we cannot do with fMRINikos K. LogothetisNature2008
Brownian motors: Noisy transport far from equilibriumPeter ReimannPhysics Report2002
Efficiency of a Carnot engine at maximum power outputF. L. Curzon
B. Ahlborn
American Journal of Physics1975
The human connectome: A structural description of the human brainOlaf Sporns
Giulio Tononi
Rolf Kötter
PLoS Computational Biology2005
Some informational aspects of visual perceptionFred AttneavePsychological Review1954
Functional nucleic acid sensorsJuewen Liu
Zehui Cao
Yi Lu
Chemical Reviews2009
Histone modifications at human enhancers reflect global cell-type-specific gene expressionNathaniel D. Heintzman
Gary C. Hon
R. David Hawkins
Pouya Kheradpour
Alexander Stark
Lindsey F. Harp
Zhen Ye
Leonard K. Lee
Rhona K. Stuart
Christina W. Ching
Keith A. Ching
Jessica E. Antosiewicz-Bourget
Hui Liu
Xinmin Zhang
Roland D. Green
Victor V. Lobanenkov
Ron Stewart
James A. Thomson
Gregory E. Crawford
Manolis Kellis
Bing Ren
Nature2009
A DNA-fuelled molecular machine made of DNABernard Yurke
Andrew J. Turberfield
Allen P. Mills
Friedrich C. Simmel
Jennifer L. Neumann
Nature2000
Conservative logicEdward Fredkin
Tommaso Toffoli
International Journal of Theoretical Physics1982
Small-world brain networksDanielle Smith Bassett
Ed Bullmore
Neuroscientist2006
Efficiency and cost of economical brain functional networksSophie Achard
Ed Bullmore
PLoS Computational Biology2007
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differencesGavin CrooksPhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics1999
The 'independent components' of natural scenes are edge filtersAnthony J. Bell
Terrence J. Sejnowski
Vision Research1997
Stochastic thermodynamics, fluctuation theorems and molecular machinesUdo SeifertReports on Progress in Physics2012
Organization, development and function of complex brain networksOlaf Sporns
Dante R. Chialvo
Marcus Kaiser
Claus C. Hilgetag
Trends in Cognitive Sciences2004
Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace frameworkStanislas Dehaene
Lionel Naccache
Cognition2001
Chemotaxis in Escherichia coli analysed by three-dimensional trackingHoward C. Berg
Douglas A. Brown
Nature1972
A Map of the Interactome Network of the Metazoan C. elegansSiming Li
Christopher M. Armstrong
Nicolas Bertin
Hui Ge
Stuart Milstein
Mike Boxem
Pierre Olivier Vidalain
Jing Dong J. Han
Alban Chesneau
Tong Hao
Debra S. Goldberg
Ning Li
Monica Martinez
Jean François Rual
Philippe Lamesch
Lai Xu
Muneesh Tewari
Sharyl L. Wong
Lan V. Zhang
Gabriel F. Berriz
Laurent Jacotot
Philippe Vaglio
Jérôme Reboul
Tomoko Hirozane-Kishikawa
Qianru Li
Harrison W. Gabel
Ahmed Elewa
Bridget Baumgartner
Debra J. Rose
Haiyuan Yu
Stephanie Bosak
Reynaldo Sequerra
Andrew Fraser
Susan E. Mango
William M. Saxton
Susan Strome
Sander v. Van Den Heuvel
Fabio Piano
Jean Vandenhaute
Claude Sardet
Mark Gerstein
Lynn Doucette-Stamm
Kristin C. Gunsalus
J. Wade Harper
Michael E. Cusick
Frederick P. Roth
David E. Hill
Marc Vidal
Science2004
Response and habituation of the human amygdala during visual processing of facial expressionHans C. Breiter
Nancy L. Etcoff
Paul J. Whalen
William A. Kennedy
Scott L. Rauch
Randy L. Buckner
Monica M. Strauss
Steven E. Hyman
Bruce R. Rosen
Neuron1996
Physics of chemoreceptionH. C. Berg
E. M. Purcell
Biophysical Journal1977
Dynamical ensembles in nonequilibrium statistical mechanicsG. Gallavotti
E. G.D. Cohen
Physical Review Letters1995
Probability of second law violations in shearing steady statesDenis J. Evans
G. P. Morriss
E. G.D. Cohen
Physical Review Letters1993
A tension-based theory of morphogenesis and compact wiring in the central nervous systemDavid C. Van EssenNature1997
Cosmological experiments in superfluid helium?W. H. ZurekNature1985
Network modelling methods for FMRIStephen M. Smith
Karla L. Miller
Gholamreza Salimi-Khorshidi
Matthew Webster
Christian F. Beckmann
Thomas E. Nichols
Joseph D. Ramsey
Mark W. Woolrich
NeuroImage2011
Fluctuations and irreversible processesL. Onsager
S. MacHlup
Physical Review1953
Experimental and Theoretical Approaches to Conscious ProcessingStanislas Dehaene
Jean Pierre Changeux
Neuron2011
Complex Extension of Quantum MechanicsCarl M. Bender
Dorje C. Brody
Hugh F. Jones
Physical Review Letters2002
Bayesian integration in sensorimotor learningKonrad P. Körding
Daniel M. Wolpert
Nature2004
Making molecular machines workWesley R. Browne
Ben L. Feringa
Nature Nanotechnology2006
Robustness in simple biochemical networksN. Barkai
S. Leibler
Nature1997
Optimization, approximation, and complexity classesChristos H. Papadimitriou
Mihalis Yannakakis
Journal of Computer and System Sciences1991
Time-frequency dynamics of resting-state brain connectivity measured with fMRICatie Chang
Gary H. Glover
NeuroImage2010
The thermodynamics of computation-a reviewCharles H. BennettInternational Journal of Theoretical Physics1982
Dynamic DNA nanotechnology using strand-displacement reactionsDavid Yu Zhang
Georg Seelig
Nature Chemistry2011
RAS oncogenes: Weaving a tumorigenic webYuliya Pylayeva-Gupta
Elda Grabocka
Dafna Bar-Sagi
Nature Reviews Cancer2011
Enzyme-free nucleic acid logic circuitsGeorg Seelig
David Soloveichik
David Yu Zhang
Erik Winfree
Science2006
Invariant visual representation by single neurons in the human brainR. Quian Quiroga
L. Reddy
G. Kreiman
C. Koch
I. Fried
Nature2005
Information, Physics, and ComputationMarc Mézard
Andrea Montanari
Information, Physics, and Computation2009
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modificationMinjia Tan
Hao Luo
Sangkyu Lee
Fulai Jin
Jeong Soo Yang
Emilie Montellier
Thierry Buchou
Zhongyi Cheng
Sophie Rousseaux
Nisha Rajagopal
Zhike Lu
Zhen Ye
Qin Zhu
Joanna Wysocka
Yang Ye
Saadi Khochbin
Bing Ren
Yingming Zhao
Cell2011
Functional brain networks develop from a "local to distributed" organizationDamien A. Fair
Alexander L. Cohen
Jonathan D. Power
Jessica A. Church
Francis M. Miezin
Bradley L. Schlaggar
Steven E. Petersen
Nico U.F. Dosenbach
PLoS Computational Biology2009
Superfamilies of Evolved and Designed NetworksRon Milo
Shalev Itzkovitz
Nadav Kashtan
Reuven Levitt
Shai Shen-Orr
Inbal Ayzenshtat
Michal Sheffer
Uri Alon
Science2004
Programming biomolecular self-assembly pathwaysPeng Yin
Harry M.T. Choi
Colby R. Calvert
Niles A. Pierce
Nature2008
The large deviation approach to statistical mechanicsHugo TouchettePhysics Reports2009
Summing up the noise in gene networksJohan PaulssonNature2004
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approachC. JarzynskiPhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics1997
Neurophysiological architecture of functional magnetic resonance images of human brainRaymond Salvador
John Suckling
Martin R. Coleman
John D. Pickard
David Menon
Ed Bullmore
Cerebral Cortex2005
A general model for the structure and allometry of plant vascular systemsGeoffrey B. West
James H. Brown
Brian J. Enquist
Nature1999
Small-world networks and functional connectivity in Alzheimer's diseaseC. J. Stam
B. F. Jones
G. Nolte
M. Breakspear
Ph Scheltens
Cerebral Cortex2007
Ramanujan graphsA. Lubotzky
R. Phillips
P. Sarnak
Combinatorica1988
Entropy production along a stochastic trajectory and an integral fluctuation theoremUdo SeifertPhysical Review Letters2005
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equalityJan Liphardt
Sophie Dumont
Steven B. Smith
Ignacio Tinoco
Carlos Bustamante
Science2002
Phosphorylation and regulation of Raf by Akt (protein kinase B)Sven Zimmermann
Karin Moelling
Science1999
Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver.E. R. Weibel
W. Stäubli
H. R. Gnägi
F. A. Hess
The Journal of cell biology1969
Robustness in bacterial chemotaxisU. Alon
M. G. Surette
N. Barkai
S. Leibler
Nature1999
An information integration theory of consciousnessGiulio TononiBMC Neuroscience2004
Sparse coding and decorrelation in primary visual cortex during natural visionWilliam E. Vinje
Jack L. Gallant
Science2000
A (sub)graph isomorphism algorithm for matching large graphsLuigi P. Cordella
Pasquale Foggia
Carlo Sansone
Mario Vento
IEEE Transactions on Pattern Analysis and Machine Intelligence2004
The second wave of synthetic biology: From modules to systemsPriscilla E.M. Purnick
Ron Weiss
Nature Reviews Molecular Cell Biology2009
Macromolecular crowding: An important but neglected aspect of the intracellular environmentR. J. EllisCurrent Opinion in Structural Biology2001
Control of DNA strand displacement kinetics using toehold exchangeDavid Yu Zhang
Erik Winfree
Journal of the American Chemical Society2009
Disrupted small-world networks in schizophreniaYong Liu
Meng Liang
Yuan Zhou
Yong He
Yihui Hao
Ming Song
Chunshui Yu
Haihong Liu
Zhening Liu
Tianzi Jiang
Brain2008
The structure and function of the homeodomainMatthew P. Scott
John W. Tamkun
George W. Hartzell
BBA - Reviews on Cancer1989
Quantum mechanical computersRichard P. FeynmanFoundations of Physics1986
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter WesenL. SzilardZeitschrift für Physik1929
The fundamental plan of the retinaR. H. MaslandNature Neuroscience2001
Genome evolution and adaptation in a long-term experiment with Escherichia coliJeffrey E. Barrick
Dong Su Yu
Sung Ho Yoon
Haeyoung Jeong
Tae Kwang Oh
Dominique Schneider
Richard E. Lenski
Jihyun F. Kim
Nature2009
Identification and classification of hubs in brain networksOlaf Sporns
Christopher J. Honey
Rolf Kötter
PLoS ONE2007
Finite time thermodynamic optimization or entropy generation minimization of energy systemsLingen Chen
Chih Wu
Fengrui Sun
Journal of Non-Equilibrium Thermodynamics1999
Role of the polycomb protein EED in the propagation of repressive histone marksRaphael Margueron
Neil Justin
Katsuhito Ohno
Miriam L. Sharpe
Jinsook Son
William J. Drury
Philipp Voigt
Stephen R. Martin
William R. Taylor
Valeria De Marco
Vincenzo Pirrotta
Danny Reinberg
Steven J. Gamblin
Nature2009
Self-Organization in a Perceptual NetworkRalph LinskerComputer1988
Exciton-polariton Bose-Einstein condensationHui Deng
Hartmut Haug
Yoshihisa Yamamoto
Reviews of Modern Physics2010
A general model for ontogenetic growthGeoffrey B. West
James H. Brown
Brian J. Enquist
Nature2001
Coding of Odors by a Receptor RepertoireElissa A. Hallem
John R. Carlson
Cell2006
Path-ensemble averages in systems driven far from equilibriumGavin CrooksPhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics2000
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energiesD. Collin
F. Ritort
C. Jarzynski
S. B. Smith
I. Tinoco
C. Bustamante
Nature2005
An analytical solution to the kinetics of breakable filament assemblyChristopher A. Waudby
Glyn L. Devlin
Adriano Aguzzi
Michele Vendruscolo
Eugene M. Terentjev
Mark E. Welland
Christopher M. Dobson
Tuomas P.J. Knowles
Samuel I.A. Cohen
Science2009
Yeast HOG1 MAP kinase cascade is regulated by a multistep phosphorelay mechanism in the SLN1-YPD1-SSK1 'two-component' osmosensorFrancesc Posas
Susannah M. Wurgler-Murphy
Tatsuya Maeda
Elizabeth A. Witten
Tran Cam Thai
Haruo Saito
Cell1996
A rigorous derivation of the chemical master equationDaniel T. GillespiePhysica A: Statistical Mechanics and its Applications1992
Improved decoding of reed-solomon and algebraic-geometry codesVenkatesan Guruswami
Madhu Sudan
IEEE Transactions on Information Theory1999
Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weightsAnatole S. Dekaban
Doris Sadowsky
Annals of Neurology1978
Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics)Michele Campisi
Peter Hänggi
Peter Talkner
Reviews of Modern Physics2011
The TAU parallel performance systemSameer S. Shende
Allen D. Malony
International Journal of High Performance Computing Applications2006
Variability, compensation and homeostasis in neuron and network functionEve Marder
Jean Marc Goaillard
Nature Reviews Neuroscience2006
Energy flow, partial equilibration, and effective temperatures in systems with slow dynamicsLeticia F. Cugliandolo
Jorge Kurchan
Luca Peliti
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics1997
Nucleosome positioning and gene regulation: Advances through genomicsCizhong Jiang
B. Franklin Pugh
Nature Reviews Genetics2009
Consciousness as integrated information: A provisional manifestoGiulio TononiBiological Bulletin2008
The olfactory bulb: Coding and processing of odor molecule informationKensaku Mori
Hiroshi Nagao
Yoshihiro Yoshihara
Science1999
The quiet revolution of numerical weather predictionPeter Bauer
Alan Thorpe
Gilbert Brunet
Nature2015
Structure and function of a human TAF(II)250 double bromodomain moduleRaymond H. Jacobson
Andreas G. Ladurner
David S. King
Robert Tjian
Science2000
The neural basis of functional brain imaging signalsDavid Attwell
Costantino Iadecola
Trends in Neurosciences2002
Energy use constrains brain information processingJulia J. Harris
Renaud Jolivet
David Attwell
Neuron2012
Pushing the limits of lithographyTakashi Ito
Shinji Okazaki
Nature2000
Network theory of microscopic and macroscopic behavior of master equation systemsJ. SchnakenbergReviews of Modern Physics1976
General mass action kineticsF. Horn
R. Jackson
Archive for Rational Mechanics and Analysis1972
The energetics of genome complexityNick Lane
William Martin
Nature2010
Modular and hierarchically modular organization of brain networksDavid Meunier
Renaud Lambiotte
Edward T. Bullmore
Frontiers in Neuroscience2010
The cost of cortical computationPeter LennieCurrent Biology2003
Spontaneously emerging cortical representations of visual attributesTal Kenet
Dmitri Bibitchkov
Misha Tsodyks
Amiram Grinvald
Amos Arieli
Nature2003
Nonequilibrium mechanics of active cytoskeletal networksDaisuke Mizuno
Catherine Tardin
C. F. Schmidt
F. C. MacKintosh
Science2007
Neural network computation with DNA strand displacement cascadesLulu Qian
Erik Winfree
Jehoshua Bruck
Nature2011
Communication in neuronal networksSimon B. Laughlin
Terrence J. Sejnowski
Science2003
Experimental verification of Landauer's principle linking information and thermodynamicsAntoine Bérut
Artak Arakelyan
Artyom Petrosyan
Sergio Ciliberto
Raoul Dillenschneider
Eric Lutz
Nature2012
Approximate computing: An emerging paradigm for energy-efficient designJie Han
Michael Orshansky
Proceedings - 2013 18th IEEE European Test Symposium, ETS 20132013
Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillationsJörn Niessing
Boris Ebisch
Kerstin E. Schmidt
Michael Niessing
Wolf Singer
Ralf A.W. Galuske
Science2005
The conscious access hypothesis: Origins and recent evidenceBernard J. BaarsTrends in Cognitive Sciences2002
Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human BehaviorMichael D. Fox
Abraham Z. Snyder
Justin L. Vincent
Marcus E. Raichle
Neuron2007
Equilibrium microstates which generate second law violating steady statesDenis J. Evans
Debra J. Searles
Physical Review E1994
Laser cooling of atomsD. J. Wineland
Wayne M. Itano
Physical Review A1979
Localization transitions in non-hermitian quantum mechanicsNaomichi Hatano
David R. Nelson
Physical Review Letters1996
Defining Network Topologies that Can Achieve Biochemical AdaptationWenzhe Ma
Ala Trusina
Hana El-Samad
Wendell A. Lim
Chao Tang
Cell2009
A simple coding procedure enhances a neuron’s information capacitySimon LaughlinZeitschrift fur Naturforschung - Section C Journal of Biosciences1981
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEMLouis SokoloffJournal of Neurochemistry1977
Development of large-scale functional brain networks in childrenKaustubh Supekar
Mark Musen
Vinod Menon
PLoS Biology2009
Human brain networks in health and diseaseDanielle S. Bassett
Edward T. Bullmore
Current Opinion in Neurology2009
Programmable and autonomous computing machine made of biomoleculesYaakov Benenson
Tamar Paz-Elizur
Rivka Adar
Ehud Keinan
Zvi Llvneh
Ehud Shapiro
Nature2001
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal networkN. M. Van Strien
M. P. Witter
N. L.M. Cappaert
Nature Reviews Neuroscience2009
RNA sequence analysis using covariance modelsSean R. Eddy
Richard Durbin
Nucleic Acids Research1994
Ultimate physical limits to computationSeth LloydNature2000
Emergent complex neural dynamicsDante R. ChialvoNature Physics2010
Nucleosome organization in the Drosophila genomeTravis N. Mavrich
Cizhong Jiang
Ilya P. Ioshikhes
Xiaoyong Li
Bryan J. Venters
Sara J. Zanton
Lynn P. Tomsho
Ji Qi
Robert L. Glaser
Stephan C. Schuster
David S. Gilmour
Istvan Albert
B. Franklin Pugh
Nature2008
Epigenetics in alternative pre-mRNA splicingReini F. Luco
Mariano Allo
Ignacio E. Schor
Alberto R. Kornblihtt
Tom Misteli
Cell2011
Age-related changes in modular organization of human brain functional networksDavid Meunier
Sophie Achard
Alexa Morcom
Ed Bullmore
NeuroImage2009
TRNAdb 2009: Compilation of tRNA sequences and tRNA genesFrank Jühling
Mario Mörl
Roland K. Hartmann
Mathias Sprinzl
Joern Pütz
Peter Stadler
Nucleic Acids Research2009
Integration of quanta in cerebellar granule cells during sensory processingPaul Chadderton
Troy W. Margie
Michael Häusser
Nature2004
The intractability of resolutionArmin HakenTheoretical Computer Science1985
A model for transmission of the H3K27me3 epigenetic markKlaus H. Hansen
Adrian P. Bracken
Diego Pasini
Nikolaj Dietrich
Simmi S. Gehani
Astrid Monrad
Juri Rappsilber
Mads Lerdrup
Kristian Helin
Nature Cell Biology2008
Olfactory network dynamics and the coding of multidimensional signalsGilles LaurentNature Reviews Neuroscience2002
Evolution of the brain and intelligenceGerhard Roth
Ursula Dicke
Trends in Cognitive Sciences2005
Hardness vs randomnessNoam Nisan
Avi Wigderson
Journal of Computer and System Sciences1994
Steady-state thermodynamics of Langevin systemsT. Hatano
S. Sasa
Physical Review Letters2001
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equalityShoichi Toyabe
Takahiro Sagawa
Masahito Ueda
Eiro Muneyuki
Masaki Sano
Nature Physics2010
CNS energy metabolism as related to functionAdelbert AmesBrain Research Reviews2000
Optimality and evolutionary tuning of the expression level of a proteinErez Dekel
Uri Alon
Nature2005
Kinetic amplification of enzyme discriminationJacques NinioBiochimie1975
Fundamental aspects of protein - Protein association kineticsG. Schreiber
G. Haran
H. X. Zhou
Chemical Reviews2009
The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machinesPaul BenioffJournal of Statistical Physics1980
Of dreaming and wakefulnessR. R. Llinás
D. Paré
Neuroscience1991
Channel noise in neuronsJohn A. White
Jay T. Rubinstein
Alan R. Kay
Trends in Neurosciences2000
Chromatin structure and the inheritance of epigenetic informationRaphaël Margueron
Danny Reinberg
Nature Reviews Genetics2010
Perceiving the epigenetic landscape through histone readersCatherine A. Musselman
Marie Eve Lalonde
Jacques Côté
Tatiana G. Kutateladze
Nature Structural and Molecular Biology2012
Non-equilibrium steady states: Fluctuations and large deviations of the density and of the currentBernard DerridaJournal of Statistical Mechanics: Theory and Experiment2007
Bacterial chemoreceptors: high-performance signaling in networked arraysGerald L. Hazelbauer
Joseph J. Falke
John S. Parkinson
Trends in Biochemical Sciences2008
Schizophrenia, neuroimaging and connectomicsAlex Fornito
Andrew Zalesky
Christos Pantelis
Edward T. Bullmore
NeuroImage2012
Consensus paper: The cerebellum's role in movement and cognitionLeonard F. Koziol
Deborah Budding
Nancy Andreasen
Stefano D'Arrigo
Sara Bulgheroni
Hiroshi Imamizu
Masao Ito
Mario Manto
Cherie Marvel
Krystal Parker
Giovanni Pezzulo
Narender Ramnani
Daria Riva
Jeremy Schmahmann
Larry Vandervert
Tadashi Yamazaki
Cerebellum2014
Extracting work from a single heat bath via vanishing quantum coherenceMarlan O. Scully
M. Suhail Zubairy
Girish S. Agarwal
Herbert Walther
Science2003
Probing the Limits to Positional InformationThomas Gregor
David W. Tank
Eric F. Wieschaus
William Bialek
Cell2007
Speed and accuracy of olfactory discrimination in the ratNaoshige Uchida
Zachary F. Mainen
Nature Neuroscience2003
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencingGunnar Schotta
Anja Ebert
Veiko Krauss
Andreas Fischer
Jan Hoffmann
Stephen Rea
Thomas Jenuwein
Rainer Dorn
Gunter Reuter
EMBO Journal2002
Thermodynamics of informationJuan M.R. Parrondo
Jordan M. Horowitz
Takahiro Sagawa
Nature Physics2015
Solution of a 20-variable 3-SAT problem on a DNA computerRavinderjit S. Braich
Nickolas Chelyapov
Cliff Johnson
Paul W.K. Rothemund
Leonard Adleman
Science2002
Structural properties of the Caenorhabditis elegans neuronal networkLav R. Varshney
Beth L. Chen
Eric Paniagua
David H. Hall
Dmitri B. Chklovskii
PLoS Computational Biology2011
Uncovering intrinsic modular organization of spontaneous brain activity in humansYong He
Jinhui Wang
Liang Wang
Zhang J. Chen
Chaogan Yan
Hong Yang
Hehan Tang
Chaozhe Zhu
Qiyong Gong
Yufeng Zang
Alan C. Evans
PLoS ONE2009
A molecular information ratchetViviana Serreli
Chin Fa Lee
Euan R. Kay
David A. Leigh
Nature2007
Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networksAndrea Hasenstaub
Yousheng Shu
Bilal Haider
Udo Kraushaar
Alvaro Duque
David A. McCormick
Neuron2005
Probabilistic algorithm for testing primalityMichael O. RabinJournal of Number Theory1980
Low-power digital signal processing using approximate addersVaibhav Gupta
Debabrata Mohapatra
Anand Raghunathan
Kaushik Roy
IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems2013
Building programmable jigsaw puzzles with RNAArkadiusz Chworos
Isil Severcan
Alexey Y. Koyfman
Patrick Weinkam
Emin Oroudjev
Helen G. Hansma
Luc Jaeger
Science2004
Genetic programming as a means for programming computers by natural selectionJohn R. KozaStatistics and Computing1994
Modelling dynamical processes in complex socio-technical systemsAlessandro VespignaniNature Physics2012
Chromatin organization marks exon-intron structureSchraga Schwartz
Eran Meshorer
Gil Ast
Nature Structural and Molecular Biology2009
Brain anatomical network and intelligenceYonghui Li
Yong Liu
Jun Li
Wen Qin
Kuncheng Li
Chunshui Yu
Tianzi Jiang
PLoS Computational Biology2009
Molecular taxonomy of major neuronal classes in the adult mouse forebrainKen Sugino
Chris M. Hempel
Mark N. Miller
Alexis M. Hattox
Peter Shapiro
Caizi Wu
Z. Josh Huang
Sacha B. Nelson
Nature Neuroscience2006
Fluctuation theorems: Work is not an observablePeter Talkner
Eric Lutz
Peter Hänggi
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2007
Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systemsMarcus Kaiser
Claus C. Hilgetag
PLoS Computational Biology2006
The evolutionary origin of complex featuresRichard E. Lenski
Charles Ofria
Robert T. Pennock
Christoph Adami
Nature2003
On the complexity of the parity argument and other inefficient proofs of existenceChristos H. PapadimitriouJournal of Computer and System Sciences1994
Probabilistic mapping and volume measurement of human primary auditory cortexJ. Rademacher
P. Morosan
T. Schormann
A. Schleicher
C. Werner
H. J. Freund
K. Zilles
NeuroImage2001
High-energy behavior in quantum field theorySteven WeinbergPhysical Review1960
Neurophysiology of the BOLD fMRI Signal in Awake MonkeysNikos K. Logothetis
Jozien B.M. Goense
Current Biology2008
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the hostWinston Timp
Andrew P. Feinberg
Nature Reviews Cancer2013
Low-Power Digital Systems Based on Adiabatic-Switching PrinciplesWilliam C. Athas
J. Svensson
Jeffrey G. Koller
Nestoras Tzartzanis
Ying Chin Chou
IEEE Transactions on Very Large Scale Integration (VLSI) Systems1994
Good practices in free-energy calculationsAndrew Pohorille
Christopher Jarzynski
Christophe Chipot
Journal of Physical Chemistry B2010
Vertex cover might be hard to approximate to within 2 - εSubhash Khot
Oded Regev
Journal of Computer and System Sciences2008
The quantum open system as a model of the heat engineR. AlickiJournal of Physics A: General Physics1979
The superfamily of heme-copper respiratory oxidasesJ. A. Garcia-Horsman
B. Barquera
J. Rumbley
J. Ma
R. B. Gennis
Journal of Bacteriology1994
Energetic basis of brain activity: Implications for neuroimagingRobert G. Shulman
Douglas L. Rothman
Kevin L. Behar
Fahmeed Hyder
Trends in Neurosciences2004
Approximate counting, uniform generation and rapidly mixing Markov chainsAlistair Sinclair
Mark Jerrum
Information and Computation1989
Growth processes in teeth distinguish modern humans from Homo erectus and earlier homininsChristopher Dean
Meave G. Leakey
Donald Reid
Friedemann Schrenk
Gary T. Schwartz
Christopher Stringer
Alan Walker
Nature2001
Stochastic neural computation I: Computational elementsBradley D. Brown
Howard C. Card
IEEE Transactions on Computers2001
Representation of odorants by receptor neuron input to the mouse olfactory bulbMatt Wachowiak
Lawrence B. Cohen
Neuron2001
The neural correlates of consciousness: An updateGiulio Tononi
Christof Koch
Annals of the New York Academy of Sciences2008
Microbial life under extreme energy limitationTori M. Hoehler
Bo Barker Jørgensen
Nature Reviews Microbiology2013
Energy as a constraint on the coding and processing of sensory informationS. B. LaughlinCurrent Opinion in Neurobiology2001
Matching is as easy as matrix inversionKetan Mulmuley
Umesh V. Vazirani
Vijay V. Vazirani
Combinatorica1987
The entorhinal grid map is discretizedHanne Stensola
Tor Stensola
Trygve Solstad
Kristian FrØland
May Britt Moser
Edvard I. Moser
Nature2012
Readers of histone modificationsMiyong Yun
Jun Wu
Jerry L. Workman
Bing Li
Cell Research2011
Modeling the impact of lesions in the human brainJeffrey Alstott
Michael Breakspear
Patric Hagmann
Leila Cammoun
Olaf Sporns
PLoS Computational Biology2009
The relationship between stochastic and deterministic models for chemical reactionsThomas G. KurtzThe Journal of Chemical Physics1972
Functional organization of rat olfactory bulb analysed by the 2‐deoxyglucose methodWilliam B. Stewart
John S. Kauer
Gordon M. Shepherd
Journal of Comparative Neurology1979
Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow.B. R. Duling
R. M. Berne
Circulation research1970
Small-world properties of nonlinear brain activity in schizophreniaMikail Rubinov
Stuart A. Knock
Cornelis J. Stam
Sifis Micheloyannis
Anthony W.F. Harris
Leanne M. Williams
Michael Breakspear
Human Brain Mapping2009
Disrupted axonal fiber connectivity in schizophreniaAndrew Zalesky
Alex Fornito
Marc L. Seal
Luca Cocchi
Carl Fredrik Westin
Edward T. Bullmore
Gary F. Egan
Christos Pantelis
Biological Psychiatry2011
Revealing modular architecture of human brain structural networks by using cortical thickness from MRIZhang J. Chen
Yong He
Pedro Rosa-Neto
Jurgen Germann
Alan C. Evans
Cerebral Cortex2008
Programmable chemical controllers made from DNAYuan Jyue Chen
Neil Dalchau
Niranjan Srinivas
Andrew Phillips
Luca Cardelli
David Soloveichik
Georg Seelig
Nature Nanotechnology2013
Representations of Odor in the Piriform CortexDan D. Stettler
Richard Axel
Neuron2009
Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucoseD. M. Bier
R. D. Leake
M. W. Haymond
K. J. Arnold
L. D. Gruenke
M. A. Sperling
D. M. Kipnis
Diabetes1977
Programming DNA tube circumferencesPeng Yin
Rizal F. Hariadi
Sudheer Sahu
Harry M.T. Choi
Ha Park Sung
Thomas H. LaBean
John H. Reif
Science2008
Efficiency at maximum power: An analytically solvable model for stochastic heat enginesT. Schmiedl
Udo Seifert
EPL2008
Experience-dependent rescaling of entorhinal gridsCaswell Barry
Robin Hayman
Neil Burgess
Kathryn J. Jeffery
Nature Neuroscience2007
Colloquium: The physics of Maxwell's demon and informationKoji Maruyama
Franco Nori
Vlatko Vedral
Reviews of Modern Physics2009
Nanoscale heat engine beyond the carnot limitJ. Roßnagel
O. Abah
F. Schmidt-Kaler
K. Singer
E. Lutz
Physical Review Letters2014
Computation in networks of passively mobile finite-state sensorsDana Angluin
James Aspnes
Zoë Diamadi
Michael J. Fischer
René Peralta
Distributed Computing2006
One-component systems dominate signal transduction in prokaryotesLuke E. Ulrich
Eugene V. Koonin
Igor B. Zhulin
Trends in Microbiology2005
Giant acceleration of free diffusion by use of tilted periodic potentialsP. Reimann
H. Linke
P. Hänggi
J. M. Rubi
A. Pérez-Madrid
C. Van Den Broeck
Physical Review Letters2001
The neural code of the retinaMarkus Meister
Michael J. Berry
Neuron1999
Reversible thermoelectric nanomaterialsT. E. Humphrey
H. Linke
Physical Review Letters2005
Current trends in finite-time thermodynamicsBjarne AndresenAngewandte Chemie - International Edition2011
Small modulation of ongoing cortical dynamics by sensory input during natural visionJózsef Fiser
Chiayu Chiu
Michael Weliky
Nature2004
Rapid Neocortical Dynamics: Cellular and Network MechanismsBilal Haider
David A. McCormick
Neuron2009
Cooperative binding of two acetylation marks on a histone tail by a single bromodomainJeanne Morinière
Sophie Rousseaux
Ulrich Steuerwald
Montserrat Soler-López
Sandrine Curtet
Anne Laure Vitte
Jérme Govin
Jonathan Gaucher
Karin Sadoul
Darren J. Hart
Jeroen Krijgsveld
Saadi Khochbin
Christoph W. Müller
Carlo Petosa
Nature2009
Generalized Jarzynski equality under nonequilibrium feedback controlTakahiro Sagawa
Masahito Ueda
Physical Review Letters2010
Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activityAhalya Viswanathan
Ralph D. Freeman
Nature Neuroscience2007
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transportT. Chou
K. Mallick
R. K.P. Zia
Reports on Progress in Physics2011
Inhibition and Brain WorkGyörgy Buzsáki
Kai Kaila
Marcus Raichle
Neuron2007
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidenceA. Crisanti
F. Ritort
Journal of Physics A: Mathematical and General2003
The connectional organization of the cortico-thalamic system of the catJ. W. Scannell
G. A.P.C. Burns
C. C. Hilgetag
M. A. O'Neil
M. P. Young
Cerebral Cortex1999
Why do female primates have such long lifespans and so few babies? or Life in the slow laneEric L. Charnov
David Berrigan
Evolutionary Anthropology: Issues, News, and Reviews1993
Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortexClaus Mathiesen
Kirsten Caesar
Nuran Akgören
Martin Lauritzen
Journal of Physiology1998
Programmable ligand-controlled riboregulators of eukaryotic gene expressionTravis S. Bayer
Christina D. Smolke
Nature Biotechnology2005
Forward flux sampling for rare event simulationsRosalind J. Allen
Chantal Valeriani
Pieter Rein ten Wolde
Journal of Physics Condensed Matter2009
Lower bounds for resolution and cutting plane proofs and monotone computationsPavel PudlákJournal of Symbolic Logic1997
Theoretical Analysis of Epigenetic Cell Memory by Nucleosome ModificationIan B. Dodd
Mille A. Micheelsen
Kim Sneppen
Geneviève Thon
Cell2007
Fluctuation theorems for stochastic dynamicsR. J. Harris
G. M. Schütz
Journal of Statistical Mechanics: Theory and Experiment2007
Variable channel expression in identified single and electrically coupled neurons in different animalsDavid J. Schulz
Jean Marc Goaillard
Eve Marder
Nature Neuroscience2006
Energetics and the evolution of human brain sizeAna Navarrete
Carel P. Van Schaik
Karin Isler
Nature2011
Reversible Quantum Brownian Heat Engines for ElectronsT. E. Humphrey
R. Newbury
R. P. Taylor
H. Linke
Physical Review Letters2002
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in miceNixon M. Abraham
Hartwig Spors
Alan Carleton
Troy W. Margrie
Thomas Kuner
Andreas T. Schaefer
Neuron2004
End of Moore's law: Thermal (noise) death of integration in micro and nano electronicsLaszlo B. KishPhysics Letters, Section A: General, Atomic and Solid State Physics2002
Thermodynamic Uncertainty Relation for Biomolecular ProcessesAndre C. Barato
Udo Seifert
Physical Review Letters2015
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3Anders M. Lindroth
David Shultis
Zuzana Jasencakova
Jörg Fuchs
Lianna Johnson
Daniel Schubert
Debasis Patnaik
Sriharsa Pradhan
Justin Goodrich
Ingo Schubert
Thomas Jenuwein
Sepideh Khorasanizadeh
Steven E. Jacobsen
EMBO Journal2004
The lac repressor displays facilitated diffusion in living cellsPetter Hammar
Prune Leroy
Anel Mahmutovic
Erik G. Marklund
Otto G. Berg
Johan Elf
Science2012
A systems perspective on early olfactory codingGilles LaurentScience1999
Realization of a micrometre-sized stochastic heat engineValentin Blickle
Clemens Bechinger
Nature Physics2012
Lower bounds on the size of bounded depth circuits over a complete basis with logical additionA. A. RazborovMathematical Notes of the Academy of Sciences of the USSR1987
Natural ProofsAlexander A. Razborov
Steven Rudich
Journal of Computer and System Sciences1997
Synthetic analog computation in living cellsRamiz Daniel
Jacob R. Rubens
Rahul Sarpeshkar
Timothy K. Lu
Nature2013
Asymmetrically modified nucleosomesPhilipp Voigt
Gary LeRoy
William J. Drury
Barry M. Zee
Jinsook Son
David B. Beck
Nicolas L. Young
Benjamin A. Garcia
Danny Reinberg
Cell2012
An architecture for fault-tolerant computation with stochastic logicWeikang Qian
Xin Li
Marc D. Riedel
Kia Bazargan
David J. Lilja
IEEE Transactions on Computers2011
Evidence for early life in Earth's oldest hydrothermal vent precipitatesMatthew S. Dodd
Dominic Papineau
Tor Grenne
John F. Slack
Martin Rittner
Franco Pirajno
Jonathan O'Neil
Crispin T.S. Little
Nature2017
Combined analog and action potential coding in hippocampal mossy fibersHenrik Alle
Jörg R.P. Geiger
Science2006
Operating on chromatin, a colorful language where context mattersKathryn E. Gardner
C. David Allis
Brian D. Strahl
Journal of Molecular Biology2011
Efficient physical embedding of topologically complex information processing networks in brains and computer circuitsDanielle S. Bassett
Daniel L. Greenfield
Andreas Meyer-Lindenberg
Daniel R. Weinberger
Simon W. Moore
Edward T. Bullmore
PLoS Computational Biology2010
The physical nature of informationRolf LandauerPhysics Letters, Section A: General, Atomic and Solid State Physics1996
Pseudorandom generators for space-bounded computationNoam NisanCombinatorica1992
Invertible cellular automata: A reviewTommaso Toffoli
Norman H. Margolus
Physica D: Nonlinear Phenomena1990
Olfactory BulbGordon M. Shepherd
Wei R. Chen
Charles A. Greer
The Synaptic Organization of the Brain2004
Thermoelectric efficiency at maximum power in a quantum dotK. Lindenberg
C. Van Den Broeck
Massimiliano Esposito
EPL2009
Derandomizing polynomial identity tests means proving circuit lower boundsValentine Kabanets
Russell Impagliazzo
Computational Complexity2004
Dynamics and memory of heterochromatin in living cellsNathaniel A. Hathaway
Oliver Bell
Courtney Hodges
Erik L. Miller
Dana S. Neel
Gerald R. Crabtree
Cell2012
Dynamical consequences of lesions in cortical networksChristopher J. Honey
Olaf Sporns
Human Brain Mapping2008
Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiardT. Gao
E. Estrecho
K. Y. Bliokh
T. C.H. Liew
M. D. Fraser
S. Brodbeck
M. Kamp
C. Schneider
S. Höfling
Y. Yamamoto
F. Nori
Y. S. Kivshar
A. G. Truscott
R. G. Dall
E. A. Ostrovskaya
Nature2015
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactionsAlexander J. Ruthenburg
Haitao Li
Thomas A. Milne
Scott Dewell
Robert K. McGinty
Melanie Yuen
Beatrix Ueberheide
Yali Dou
Tom W. Muir
Dinshaw J. Patel
C. David Allis
Cell2011
Yeast heterochromatin: Regulation of its assembly and inheritance by histonesMichael GrunsteinCell1998
Brain growth, life history, and cognition in primate and human evolutionS. R. LeighAmerican Journal of Primatology2004
Thermodynamics of a colloidal particle in a time-dependent nonharmonic potentialV. Blickle
T. Speck
L. Helden
C. Bechinger
Udo Seifert
Physical Review Letters2006
Notes on Landauer's principle, reversible computation, and Maxwell's DemonCharles H. BennettStudies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics2003
Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptorsEmmanuel HermansPharmacology and Therapeutics2003
Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complexMartin Billeter
Yan Qiu Qian
Gottfried Otting
Martin Müller
Walter Gehring
Kurt Wüthrich
Journal of Molecular Biology1993
Energetics of functional activation in neural tissuesLouis SokoloffNeurochemical Research1999
Nucleosomes are well positioned in exons and carry characteristic histone modificationsRobin Andersson
Stefan Enroth
Alvaro Rada-Iglesias
Claes Wadelius
Jan Komorowski
Genome Research2009
The physics of molecular motorsC. Bustamante
D. Keller
G. Oster
Accounts of Chemical Research2001
Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9Vesco Mutskov
Gary Felsenfeld
EMBO Journal2004
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineeringAndrea Arcuri
Lionel Briand
Software Testing Verification and Reliability2014
Resurrecting ancient genes: Experimental analysis of extinct moleculesJoseph W. ThorntonNature Reviews Genetics2004
Necessary and sufficient conditions for complex balancing in chemical kineticsF. HornArchive for Rational Mechanics and Analysis1972
A small world of neuronal synchronyShan Yu
Debin Huang
Wolf Singer
Danko Nikolić
Cerebral Cortex2008
Resonances arising from hydrodynamic memory in Brownian motionThomas Franosch
Matthias Grimm
Maxim Belushkin
Flavio M. Mor
Giuseppe Foffi
László Forró
Sylvia Jeney
Nature2011
Theory of reversible diffusion-influenced reactionsNoam Agmon
Attila Szabo
The Journal of Chemical Physics1990
Fluctuation theorem for arbitrary open quantum systemsMichele Campisi
Peter Talkner
Peter Hänggi
Physical Review Letters2009
Minimal energy cost for thermodynamic information processing: Measurement and information erasureTakahiro Sagawa
Masahito Ueda
Physical Review Letters2009
On the degree of boolean functions as real polynomialsNoam Nisan
Mario Szegedy
Computational Complexity1994
The WUS homeobox-containing (WOX) protein familyEric van der Graaff
Thomas Laux
Stefan A. Rensing
Genome Biology2009
Low Power Microelectronics: Retrospect and ProspectJames D. MeindlProceedings of the IEEE1995
Integrated information in discrete dynamical systems: Motivation and theoretical frameworkDavid Balduzzi
Giulio Tononi
PLoS Computational Biology2008
Design principles of a bacterial signalling networkMarkus Kollmann
Linda Løvdok
Kilian Bartholomé
Jens Timmer
Victor Sourjik
Nature2005
The thermodynamic meaning of negative entropyLídia Del Rio
Johan Åberg
Renato Renner
Oscar Dahlsten
Vlatko Vedral
Nature2011
Rare events and the convergence of exponentially averaged work valuesChristopher JarzynskiPhysical Review E - Statistical, Nonlinear, and Soft Matter Physics2006
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic MemoryDavid J. Katz
T. Matthew Edwards
Valerie Reinke
William G. Kelly
Cell2009
Structural sources of robustness in biochemical reaction networksGuy Shinar
Martin Feinberg
Science2010
Insect olfactory receptors.J. Boeckh
K. E. Kaissling
D. Schneider
Cold Spring Harbor symposia on quantitative biology1965
Weight consistency specifies regularities of macaque cortical networksN. T. Markov
P. Misery
A. Falchier
C. Lamy
J. Vezoli
R. Quilodran
M. A. Gariel
P. Giroud
M. Ercsey-Ravasz
L. J. Pilaz
C. Huissoud
P. Barone
C. Dehay
Z. Toroczkai
D. C. Van Essen
H. Kennedy
K. Knoblauch
Cerebral Cortex2011
Extension of the fluctuation theoremR. van Zon
E. G.D. Cohen
Physical Review Letters2003
Genome-wide patterns of histone modifications in yeastCatherine B. Millar
Michael Grunstein
Nature Reviews Molecular Cell Biology2006
Three faces of the second law. I. Master equation formulation2Massimiliano Esposito
Christian Van Den Broeck
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2010
Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulationFrank R. Sharp
John S. Kauer
Gordon M. Shepherd
Brain Research1975
The energy-speed-accuracy trade-off in sensory adaptationGanhui Lan
Pablo Sartori
Silke Neumann
Victor Sourjik
Yuhai Tu
Nature Physics2012
Three faces of the second law. I. Master equation formulationMassimiliano Esposito
Christian Van Den Broeck
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2010
The energy–speed–accuracy trade-off in sensory adaptationGanhui Lan
Pablo Sartori
Silke Neumann
Victor Sourjik
Yuhai Tu
Nature Physics2012
Construction of an in vitro bistable circuit from synthetic transcriptional switchesJongmin Kim
Kristin S. White
Erik Winfree
Molecular Systems Biology2006
Mapping information flow in sensorimotor networksMax Lungarella
Olaf Sporns
PLoS Computational Biology2006
The sniff as a unit of olfactory processingAdam Kepecs
Naoshige Uchida
Zachary F. Mainen
Chemical Senses2006
Synthetic in vitro transcriptional oscillatorsJongmin Kim
Erik Winfree
Molecular Systems Biology2011
Transitions from Nonliving to Living MatterSteen Rasmussen
Liaohai Chen
David Deamer
David C. Krakauer
Norman H. Packard
Mark A. Bedau
Peter Stadler
Science2004
Experimental test of the quantum Jarzynski equality with a trapped-ion systemShuoming An
Jing Ning Zhang
Mark Um
Dingshun Lv
Yao Lu
Junhua Zhang
Zhang Qi Yin
H. T. Quan
Kihwan Kim
Nature Physics2015
Role of mechanical factors in the morphology of the primate cerebral cortexClaus C. Hilgetag
Helen Barbas
PLoS Computational Biology2006
Second law and Landauer principle far from equilibriumC. Van Den Broeck
Massimiliano Esposito
EPL2011
Size at birth, postnatal growth and risk of obesityK. K. OngHormone Research2006
Imprecise ComputationsJane W.S. Liu
Wei Kuan Shih
Kwei Jay Lin
Jen Yao Chung
Proceedings of the IEEE1994
Second-order selection for evolvability in a large Escherichia coli populationRobert J. Woods
Jeffrey E. Barrick
Tim F. Cooper
Utpala Shrestha
Mark R. Kauth
Richard E. Lenski
Science2011
The emergence of human uniqueness: Characters underlying behavioral modernityKim Hill
Michael Barton
A. Magdalena Hurtado
Evolutionary Anthropology2009
Forward and backward propagation of dendritic impulses and their synaptic control in mitral cellsWei R. Chen
Jens Midtgaard
Gordon M. Shepherd
Science1997
Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibriumAndrea Parmeggiani
Frank Jülicher
Armand Ajdari
Jacques Prost
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics1999
The anatomical distance of functional connections predicts brain network topology in health and schizophreniaAaron F. Alexander-Bloch
Petra E. Vértes
Reva Stidd
François Lalonde
Liv Clasen
Judith Rapoport
Jay Giedd
Edward T. Bullmore
Nitin Gogtay
Cerebral Cortex2013
Fast-growth thermodynamic integration: Error and efficiency analysisG. HummerJournal of Chemical Physics2001
ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in LightHaruhisa Okawa
Alapakkam P. Sampath
Simon B. Laughlin
Gordon L. Fain
Current Biology2008
Nonequilibrium fluctuations in a resistorN. Garnier
S. Ciliberto
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2005
Using information theory to search for co-evolving residues in proteinsL. C. Martin
G. B. Gloor
S. D. Dunn
L. M. Wahl
Bioinformatics2005
Self-regulating gene: An exact solutionJ. E.M. Hornos
D. Schultz
G. C.P. Innocentini
J. Wang
A. M. Walczak
J. N. Onuchic
P. G. Wolynes
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2005
Motion out of noisy statesRolf LandauerJournal of Statistical Physics1988
Classical and quantum fluctuation theorems for heat exchangeChristopher Jarzynski
Daniel K. Wójcik
Physical Review Letters2004
Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trapD. M. Carberry
J. C. Reid
G. M. Wang
E. M. Sevick
Debra J. Searles
Denis J. Evans
Physical Review Letters2004
Argonaute proteins couple chromatin silencing to alternative splicingMaya Ameyar-Zazoua
Christophe Rachez
Mouloud Souidi
Philippe Robin
Lauriane Fritsch
Robert Young
Nadya Morozova
Romain Fenouil
Nicolas Descostes
Jean Christophe Andrau
Jacques Mathieu
Ali Hamiche
Slimane Ait-Si-Ali
Christian Muchardt
Eric Batsché
Annick Harel-Bellan
Nature Structural and Molecular Biology2012
Combinatorial complexity in chromatin structure and function: Revisiting the histone codeOliver J. RandoCurrent Opinion in Genetics and Development2012
Algorithmic randomness and physical entropyW. H. ZurekPhysical Review A1989
Fluctuation theorem for nonequilibrium reactionsPierre GaspardJournal of Chemical Physics2004
General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screeningXiaohong Cheng
Xiangjun Liu
Tao Bing
Zehui Cao
Dihua Shangguan
Biochemistry2009
Thermophoretic depletion follows boltzmann distributionStefan Duhr
Dieter Braun
Physical Review Letters2006
Fast signals and slow marks: the dynamics of histone modificationsTeresa K. Barth
Axel Imhof
Trends in Biochemical Sciences2010
Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcriptsMarco Magistri
Mohammad Ali Faghihi
Georges St Laurent
Claes Wahlestedt
Trends in Genetics2012
Defect and error tolerance in the presence of massive numbers of defectsMelvin A. Breuer
Sandeep K. Gupta
T. M. Mak
IEEE Design and Test of Computers2004
Cellular stoichiometry of the components of the chemotaxis signaling complexMingshan Li
Gerald L. Hazelbauer
Journal of Bacteriology2004
Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cellNicolas Brunel
Vincent Hakim
Philippe Isope
Jean Pierre Nadal
Boris Barbour
Neuron2004
Path integral formulation of general diffusion processesRobert GrahamZeitschrift für Physik B Condensed Matter and Quanta1977
Optimal finite-time processes in stochastic thermodynamicsTim Schmiedl
Udo Seifert
Physical Review Letters2007
One rule to grow them all: A general theory of neuronal branching and its practical applicationHermann Cuntz
Friedrich Forstner
Alexander Borst
Michael Häusser
PLoS Computational Biology2010
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activityMatthew D. Young
Tracy A. Willson
Matthew J. Wakefield
Evelyn Trounson
Douglas J. Hilton
Marnie E. Blewitt
Alicia Oshlack
Ian J. Majewski
Nucleic Acids Research2011
Conformational spread in a ring of proteins: A stochastic approach to allosteryT. A.J. Duke
N. Le Novère
D. Bray
Journal of Molecular Biology2001
Number of parallel fiber synapses on an individual Purkinje cell in the cerebellum of the ratR. M.A. Napper
R. J. Harvey
Journal of Comparative Neurology1988
The complexity of facets (and some facets of complexity)C. H. Papadimitriou
M. Yannakakis
Journal of Computer and System Sciences1984
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transductionEduardo D. SontagIEEE Transactions on Automatic Control2001
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theoremG. N. Bochkov
Yu E. Kuzovlev
Physica A: Statistical Mechanics and its Applications1981
TrxG and PcG proteins but not methylated histones remain associated with DNA through replicationSvetlana Petruk
Yurii Sedkov
Danika M. Johnston
Jacob W. Hodgson
Kathryn L. Black
Sina K. Kovermann
Samantha Beck
Eli Canaani
Hugh W. Brock
Alexander Mazo
Cell2012
Entropy production as correlation between system and reservoirMassimiliano Esposito
Katja Lindenberg
Christian Van Den Broeck
New Journal of Physics2010
Fly photoreceptors demonstrate energy-information trade-offs in neural codingJeremy E. Niven
John C. Anderson
Simon B. Laughlin
PLoS Biology2007
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1Subhash A. Khot
Nisheeth K. Vishnoi
Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS2005
A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycombAna Raquel Pengelly
Ömer Copur
Herbert Jäckle
Alf Herzig
Jürg Müller
Science2013
The mesoscopic dynamics of thermodynamic systemsD. Reguera
J. M. Rubí
J. M.G. Vilar
Journal of Physical Chemistry B2005
Theoretical predictions of spatiotemporal receptive fields of fly LMCs, and experimental validationJ. H. van HaterenJournal of Comparative Physiology A1992
Sparse complete sets for NP: Solution of a conjecture of Berman and HartmanisStephen R. MahaneyJournal of Computer and System Sciences1982
Stochastic thermodynamics under coarse grainingMassimiliano EspositoPhysical Review E - Statistical, Nonlinear, and Soft Matter Physics2012
Measuring information integrationGiulio Tononi
Olaf Sporns
BMC Neuroscience2003
Aerobic glycolysis in the human brain is associated with development and neotenous gene expressionManu S. Goyal
Michael Hawrylycz
Jeremy A. Miller
Abraham Z. Snyder
Marcus E. Raichle
Cell Metabolism2014
Complex parameter landscape for a complex neuron modelPablo Achard
Erik De Schutter
PLoS Computational Biology2006
Speeding up processing with approximation circuitsShih Lien LuComputer2004
Flaked stones and old bones: Biological and cultural evolution at the dawn of technologyThomas PlummerYearbook of Physical Anthropology2004
An experimental test of the Jarzynski equality in a mechanical experimentF. Douarche
S. Ciliberto
A. Petrosyan
I. Rabbiosi
Europhysics Letters2005
Synaptic connectivity and neuronal morphology: Two sides of the same coinDmitri B. ChklovskiiNeuron2004
Efficiency at maximum power of Feynman's ratchet as a heat engineZ. C. TuJournal of Physics A: Mathematical and Theoretical2008
Histone acetylation as an epigenetic determinant of long-term transcriptional competenceB. M. TurnerCellular and Molecular Life Sciences1998
Computation with finite stochastic chemical reaction networksDavid Soloveichik
Matthew Cook
Erik Winfree
Jehoshua Bruck
Natural Computing2008
Molecular combustion motorsMarcelo O. MagnascoPhysical Review Letters1994
Generalized fluctuation-dissipation theorem for steady-state systemsJ. Prost
J. F. Joanny
J. M.R. Parrondo
Physical Review Letters2009
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scalingKevin J. Nowka
Gary D. Carpenter
Eric W. MacDonald
Hung C. Ngo
Bishop C. Brock
Koji I. Ishii
Tuyet Y. Nguyen
Jeffrey L. Burns
IEEE Journal of Solid-State Circuits2002
Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on ratsEugene VovenkoPflugers Archiv European Journal of Physiology1999
The microvascular system of the striate and extrastriate visual cortex of the macaqueBruno Weber
Anna Lena Keller
Johannes Reichold
Nikos K. Logothetis
Cerebral Cortex2008
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translationShawn K. Desai
Justin P. Gallivan
Journal of the American Chemical Society2004
A quantitative analysis of sniffing strategies in rats performing odor detection tasksSteven L. Youngentob
Maxwell M. Mozell
Paul R. Sheehe
David E. Hornung
Physiology and Behavior1987
The folding cooperativity of a protein is controlled by its chain topologyElizabeth A. Shank
Ciro Cecconi
Jesse W. Dill
Susan Marqusee
Carlos Bustamante
Nature2010
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymesRobert Penchovsky
Ronald R. Breaker
Nature Biotechnology2005
Optimal Process Paths for Endoreversible SystemsK. H. Hoffmann
J. Burzler
A. Fischer
M. Schaller
S. Schubert
Journal of Non-Equilibrium Thermodynamics2003
Rethinking mammalian brain evolutionTerrence W. DeaconIntegrative and Comparative Biology1990
Noise stability of functions with low influences: Invariance and optimalityElchanan Mossel
Ryan O'donnell
Krzysztof Oleszkiewicz
Annals of Mathematics2010
Encoding and Error-Correction Procedures for the Bose-Chaudhuri CodesW. W. PetersonIRE Transactions on Information Theory1960
Thermodynamics with continuous information flowJordan M. Horowitz
Massimiliano Esposito
Physical Review X2014
High-precision test of Landauer's principle in a feedback trapYonggun Jun
Momčilo Gavrilov
John Bechhoefer
Physical Review Letters2014
Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillationsHong QianJournal of Physical Chemistry B2006
Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the DipteraS. B. Laughlin
M. Weckström
Journal of Comparative Physiology A1993
Functional brain network efficiency predicts intelligenceNicolas Langer
Andreas Pedroni
Jürgen Hänggi
Daria Knoch
Lutz Jäncke
Lorena R.R. Gianotti
Human Brain Mapping2012
Fluctuation theorem for currents and Schnakenberg network theoryDavid Andrieux
Pierre Gaspard
Journal of Statistical Physics2007
One way functions and pseudorandom generatorsLeonid A. LevinCombinatorica1987
Brownian motion: A paradigm of soft matter and biological physicsErwin Frey
Klaus Kroy
Annalen der Physik (Leipzig)2005
Life under extreme energy limitation: A synthesis of laboratory- and field-based investigationsMark A. Lever
Karyn L. Rogers
Karen G. Lloyd
Jörg Overmann
Bernhard Schink
Rudolf K. Thauer
Tori M. Hoehler
Bo Barker Jørgensen
FEMS Microbiology Reviews2015
Single-photon detection by rod cells of the retinaF. Rieke
D. A. Baylor
Reviews of Modern Physics1998
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuliThomas S. Shimizu
Yuhai Tu
Howard C. Berg
Molecular Systems Biology2010
Thermodynamic bounds on efficiency for systems with broken time-reversal symmetryGiuliano Benenti
Keiji Saito
Giulio Casati
Physical Review Letters2011
Nonequilibrium work theorem for a system strongly coupled to a thermal environmentChris JarzynskiJournal of Statistical Mechanics: Theory and Experiment2004
Principles of control thermodynamicsP. Salamon
J. D. Nulton
G. Siragusa
T. R. Andersen
A. Limon
Energy2001
Biomolecules under mechanical forceSanjay Kumar
Mai Suan Li
Physics Reports2010
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibriumHong Qian
Daniel A. Beard
Biophysical Chemistry2005
A quantitative comparison of sRNA-based and protein-based gene regulationPankaj Mehta
Sidhartha Goyal
Ned S. Wingreen
Molecular Systems Biology2008
Metabolic correlates of hominid brain evolutionWilliam R. Leonard
Marcia L. Robertson
J. Josh Snodgrass
Christopher W. Kuzawa
Comparative Biochemistry and Physiology - A Molecular and Integrative Physiology2003
Response correlation maps of neurons in the mammalian olfactory bulbMinmin Luo
Lawrence C. Katz
Neuron2001
Neurobiologically realistic determinants of Self-Organized criticality in networks of spiking neuronsMikail Rubinov
Olaf Sporns
Jean Philippe Thivierge
Michael Breakspear
PLoS Computational Biology2011
Observation of the Kibble-Zurek scaling law for defect formation in ion crystalsS. Ulm
J. Roßnagel
G. Jacob
C. Degünther
S. T. Dawkins
U. G. Poschinger
R. Nigmatullin
A. Retzker
M. B. Plenio
F. Schmidt-Kaler
K. Singer
Nature Communications2013
Intraglomerular inhibition: Signaling mechanisms of an olfactory microcircuitGabe J. Murphy
Daniel P. Darcy
Jeffry S. Isaacson
Nature Neuroscience2005
Mechanisms for the inheritance of chromatin statesDanesh MoazedCell2011
Nutritional requirements and human evolution: A bioenergetics modelWilliam R. Leonard
Marcia L. Robertson
American Journal of Human Biology1992
Physical origins of entropy production, free energy dissipation, and their mathematical representationsHao Ge
Hong Qian
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2010
Thermodynamics of a physical model implementing a Maxwell demonPhilipp Strasberg
Gernot Schaller
Tobias Brandes
Massimiliano Esposito
Physical Review Letters2013
Optical realization of relativistic non-Hermitian quantum mechanicsStefano LonghiPhysical Review Letters2010
The physics of forgetting: Landauer's erasure principle and information theoryM. B. Plenio
V. Vitelli
Contemporary Physics2001
Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady statesR. K.P. Zia
B. Schmittmann
Journal of Statistical Mechanics: Theory and Experiment2007
Criticism of Feynman’s analysis of the ratchet as an engineJuan M. R. Parrondo
Pep Español
American Journal of Physics1996
Costs of encephalization: the energy trade-off hypothesis tested on birdsKarin Isler
Carel van Schaik
Journal of Human Evolution2006
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaineJ. Astrup
P. M. Sorensen
H. R. Sorensen
Anesthesiology1981
Characterization of the RNA content of chromatinTanmoy Mondal
Markus Rasmussen
Gaurav Kumar Pandey
Anders Isaksson
Chandrasekhar Kanduri
Genome Research2010
Thermodynamic constraints for biochemical networksDaniel A. Beard
Eric Babson
Edward Curtis
Hong Qian
Journal of Theoretical Biology2004
Leveraging program equivalence for adaptive program repair: Models and first resultsWestley Weimer
Zachary P. Fry
Stephanie Forrest
2013 28th IEEE/ACM International Conference on Automated Software Engineering, ASE 2013 - Proceedings2013
Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamicsTakahiro Sagawa
Masahito Ueda
Physical Review Letters2012
How Much the Eye Tells the BrainKristin Koch
Judith McLean
Ronen Segev
Michael A. Freed
Michael J. Berry
Vijay Balasubramanian
Peter Sterling
Current Biology2006
Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking NeuronsBrett C. Carter
Bruce P. Bean
Neuron2009
Games against natureChristos H. PapadimitriouJournal of Computer and System Sciences1985
Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demonJ. V. Koski
V. F. Maisi
T. Sagawa
J. P. Pekola
Physical Review Letters2014
Neuroenergetics and the kinetic design of excitatory synapsesDavid Attwell
Alasdair Gibb
Nature Reviews Neuroscience2005
Computation on stochastic bit streams digital image processing case studiesPeng Li
David J. Lilja
Weikang Qian
Kia Bazargan
Marc D. Riedel
IEEE Transactions on Very Large Scale Integration (VLSI) Systems2014
Visual DSD: A design and analysis tool for DNA strand displacement systemsMatthew R. Lakin
Simon Youssef
Filippo Polo
Stephen Emmott
Andrew Phillips
Bioinformatics2011
Information theory in molecular biologyChristoph AdamiPhysics of Life Reviews2004
On the shoulders of giants: Properties of the stellar halo and the milky way mass distributionPrajwal Raj Kafle
Sanjib Sharma
Geraint F. Lewis
Joss Bland-Hawthorn
Astrophysical Journal2014
Energy aware computing through probabilistic switching: A study of limitsKrishna V. PalemIEEE Transactions on Computers2005
Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neuronsJohn P. McGann
Nicolás Pírez
Melanie A. Gainey
Christina Muratore
Adam S. Elias
Matt Wachowiak
Neuron2005
The magnificent compromise: cortical field evolution in mammals.Leah KrubitzerNeuron2007
Quantum equivalent of the Carnot cycleJ. E. Geusic
E. O. Schulz-DuBios
H. E.D. Scovil
Physical Review1967
Energy Aware Computing Through Probabilistic Switching: A Study of LimitsKrishna V. PalemIEEE Transactions on Computers2005
Parallel mechanisms of epigenetic reprogramming in the germlineJamie A. Hackett
Jan J. Zylicz
M. Azim Surani
Trends in Genetics2012
Dissipation and noise immunity in computation and communicationRolf LandauerNature1988
Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortexYusuke Adachi
Takahiro Osada
Olaf Sporns
Takamitsu Watanabe
Teppei Matsui
Kentaro Miyamoto
Yasushi Miyashita
Cerebral Cortex2012
Nonequilibrium detailed fluctuation theorem for repeated discrete feedbackJordan M. Horowitz
Suriyanarayanan Vaikuntanathan
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2010
Quantum szilard engineSang Wook Kim
Takahiro Sagawa
Simone De Liberato
Masahito Ueda
Physical Review Letters2011
Theory of a Systematic Computational Error in Free Energy DifferencesDaniel M. Zuckerman
Thomas B. Woolf
Physical Review Letters2002
Information-theoretic approach to the study of control systemsHugo Touchette
Seth Lloyd
Physica A: Statistical Mechanics and its Applications2004
Path-integral analysis of fluctuation theorems for general Langevin processesVladimir Y. Chernyak
Michael Chertkov
Christopher Jarzynski
Journal of Statistical Mechanics: Theory and Experiment2006
Split decision: What happens to nucleosomes during DNA replication?Anthony T. AnnunziatoJournal of Biological Chemistry2005
Reversible electronic logic using switchesR. C. MerkleNanotechnology1993
High nucleosome occupancy is encoded at human regulatory sequencesDesiree Tillo
Noam Kaplan
Irene K. Moore
Yvonne Fondufe-Mittendorf
Andrea J. Gossett
Yair Field
Jason D. Lieb
Jonathan Widom
Eran Segal
Timothy R. Hughes
PLoS ONE2010
On the origin of modular variationHod Lipson
Jordan B. Pollack
Nam P. Suh
Evolution2002
Work fluctuation theorems for harmonic oscillatorsF. Douarche
S. Joubaud
N. B. Garnier
A. Petrosyan
S. Ciliberto
Physical Review Letters2006
Influence of combinatorial histone modifications on antibody and effector protein recognitionStephen M. Fuchs
Krzysztof Krajewski
Richard W. Baker
Victoria L. Miller
Brian D. Strahl
Current Biology2011
Prevalence of epistasis in the evolution of influenza A surface proteinsSergey Kryazhimskiy
Jonathan Dushoff
Georgii A. Bazykin
Joshua B. Plotkin
PLoS Genetics2011
Biorthogonal quantum mechanicsDorje C. BrodyJournal of Physics A: Mathematical and Theoretical2014
Injected power fluctuations in Langevin equationJean FaragoJournal of Statistical Physics2002
Qualia: The geometry of integrated informationDavid Balduzzi
Giulio Tononi
PLoS Computational Biology2009
Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensorsJohann Elbaz
Michal Moshe
Bella Shlyahovsky
Itamar Willner
Chemistry - A European Journal2009
Symbiotic relationship between brain structure and dynamicsMikail Rubinov
Olaf Sporns
Cees van Leeuwen
Michael Breakspear
BMC Neuroscience2009
Correcting errors beyond the Guruswami-Sudan radius in polynomial timeFarzad Parvaresh
Alexander Vardy
Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS2005
Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillatorMaximilian Weitz
Jongmin Kim
Korbinian Kapsner
Erik Winfree
Elisa Franco
Friedrich C. Simmel
Nature Chemistry2014
New device for high-throughput viability screening of flow biofilmsMichael R. Benoit
Carolyn G. Conant
Cristian Ionescu-Zanetti
Michael Schwartz
A. Matin
Applied and Environmental Microbiology2010
A simple population protocol for fast robust approximate majorityDana Angluin
James Aspnes
David Eisenstat
Distributed Computing2008
Einstein relation generalized to nonequilibriumV. Blickle
T. Speck
C. Lutz
C. Bechinger
Udo Seifert
Physical Review Letters2007
Integral fluctuation theorem for the housekeeping heatT. Speck
Udo Seifert
Journal of Physics A: Mathematical and General2005
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eyeSimon B. LaughlinProgress in Retinal and Eye Research1994
Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wildNancy L. Barrickman
Meredith L. Bastian
Karin Isler
Carel P. van Schaik
Journal of Human Evolution2008
Quantum criticality as a resource for quantum estimationPaolo Zanardi
Matteo G.A. Paris
Lorenzo Campos Venuti
Physical Review A - Atomic, Molecular, and Optical Physics2008
Fluidized granular medium as an instance of the fluctuation theoremKlebert Feitosa
Narayanan Menon
Physical Review Letters2004
Fast computation by population protocols with a leaderDana Angluin
James Aspnes
David Eisenstat
Distributed Computing2008
Enzyme-free nucleic acid dynamical systemsNiranjan Srinivas
James Parkin
Georg Seelig
Erik Winfree
David Soloveichik
Science2017
The effects of spatial constraints on the evolution of weighted complex networksAlain Barrat
Marc Barthélemy
Alessandro Vespignani
Journal of Statistical Mechanics: Theory and Experiment2005
Fluctuation theorems for quantum master equationsMassimiliano Esposito
Shaul Mukamel
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2006
Comparison of far-from-equilibrium work relationsChristopher JarzynskiComptes Rendus Physique2007
BPP and the polynomial hierarchyClemens LautemannInformation Processing Letters1983
Incremental growth tables: Supplementary to previously published chartsR. N. Baumgartner
A. F. Roche
J. H. Himes
American Journal of Clinical Nutrition1986
Nonequilibrium energetics of a single F1-ATPase moleculeShoichi Toyabe
Tetsuaki Okamoto
Takahiro Watanabe-Nakayama
Hiroshi Taketani
Seishi Kudo
Eiro Muneyuki
Physical Review Letters2010
Making copies of chromatin: the challenge of nucleosomal organization and epigenetic informationArmelle Corpet
Geneviève Almouzni
Trends in Cell Biology2009
Heterochromatin formation involves changes in histone modifications over multiple cell generationsYael Katan-Khaykovich
Kevin Struhl
EMBO Journal2005
An informational process based on reversible universal cellular automataEdward FredkinPhysica D: Nonlinear Phenomena1990
Using profile information to assist classic code optimizationsPohua P. Chang
Scott A. Mahlke
Wen‐Mei W. Hwu
Software: Practice and Experience1991
The ManyBugs and IntroClass Benchmarks for Automated Repair of C ProgramsClaire Le Goues
Neal Holtschulte
Edward K. Smith
Yuriy Brun
Premkumar Devanbu
Stephanie Forrest
Westley Weimer
IEEE Transactions on Software Engineering2015
Information processing and the second law of thermodynamics: An inclusive, Hamiltonian approachSebastian Deffner
Christopher Jarzynski
Physical Review X2014
Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specificC. F. Ekerot
H. Jörntell
European Journal of Neuroscience2001
Reducibility among combinatorial problemsRichard M. Karp50 Years of Integer Programming 1958-2008: From the Early Years to the State-of-the-Art2010
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elementsAnshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow
Genome Research2012
Fluctuation theorem applied to F1-ATPaseKumiko Hayashi
Hiroshi Ueno
Ryota Iino
Hiroyuki Noji
Physical Review Letters2010
Effective temperature of active matterDavide Loi
Stefano Mossa
Leticia F. Cugliandolo
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics2008
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