Template:Reference Material Query

	Author name	Source name	Year	Keyword	Citation count	Page views
Elements of Information Theory	Thomas M. Cover Joy A. Thomas	Elements of Information Theory	2005		28,916	30
Collective dynamics of 'small-world' networks	Duncan J. Watts Steven H. Strogatz	Nature	1998		27,566	4
A fast and elitist multiobjective genetic algorithm: NSGA-II	Kalyanmoy Deb Amrit Pratap Sameer Agarwal T. Meyarivan	IEEE Transactions on Evolutionary Computation	2002	Constraint handling Elitism Genetic algorithms Multicriterion decision making Multiobjective optimization Pareto-optimal solutions	26,772	9
Image quality assessment: From error visibility to structural similarity	Zhou Wang Alan Conrad Bovik Hamid Rahim Sheikh Eero P. Simoncelli	IEEE Transactions on Image Processing	2004	Error sensitivity Human visual system (HVS) Image coding Image quality assessment JPEG JPEG2000 Perceptual quality Structural information Structural similarity (SSIM)	23,582	6
Translating the histone code	T. Jenuwein C. D. Allis	Science	2001		7,178	5
The brain's default network: Anatomy, function, and relevance to disease	Randy L. Buckner Jessica R. Andrews-Hanna Daniel L. Schacter	Annals of the New York Academy of Sciences	2008	Alzheimer Default mode Default network Default system Hippocampus Memory PET Schizophrenia fMRI	6,106	8
On the nature of allosteric transitions: A plausible model	Jacque Monod Jeffries Wyman Jean Pierre Changeux	Journal of Molecular Biology	1965		5,885	7
Complex network measures of brain connectivity: Uses and interpretations	Mikail Rubinov Olaf Sporns	NeuroImage	2010		5,606	9
Distributed hierarchical processing in the primate cerebral cortex	Daniel J. Felleman David C. Van Essen	Cerebral Cortex	1991		5,103	5
Near-optimal signal recovery from random projections: Universal encoding strategies?	Emmanuel J. Candes Terence Tao	IEEE Transactions on Information Theory	2006	Concentration of measure Convex optimization Duality in optimization Linear programming Random matrices Random projections Signal recovery Singular values of random matrices Sparsity Trigonometric expansions Uncertainty principle	5,004	0
Factor graphs and the sum-product algorithm	Frank R. Kschischang Brendan J. Frey Hans Andrea Loeliger	IEEE Transactions on Information Theory	2001	Belief propagation Factor graphs Fast Fourier transform Forward/backward algorithm Graphical models Iterative decoding Kalman filtering Marginalization Sum-product algorithm Tanner graphs Viterbi algorithm	4,387	4
Neurophysiological investigation of the basis of the fMRI signal	N. K. Logothetis J. Pauls M. Augath T. Trinath A. Oeltermann	Nature	2001		4,384	1
Irreversibility and Heat Generation in the Computing Process	Rolf Landauer		1961		4,256	44
Mammalian MAP kinase signalling cascades	L. Chang M. Karin	Nature	2001		4,146	2
Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion	Jonathan D. Power Kelly A. Barnes Abraham Z. Snyder Bradley L. Schlaggar Steven E. Petersen	NeuroImage	2012	Artifact FMRI FcMRI Motion Movement Network Noise Resting state	4,056	2
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions	Daniel T. Gillespie	Journal of Computational Physics	1976		3,851	11
Real spectra in non-hermitian hamiltonians having PT symmetry	Carl M. Bender Stefan Boettcher	Physical Review Letters	1998		3,725	2
Nonequilibrium equality for free energy differences	C. Jarzynski	Physical Review Letters	1997		3,183	6
A synthetic oscillatory network of transcriptional regulators	Michael B. Elowitz Stanislas Leibier	Nature	2000		3,079	3
Topology of cosmic domains and strings	T. W.B. Kibble	Journal of Physics A: General Physics	1976		3,079	11
Mapping the structural core of human cerebral cortex	Patric Hagmann Leila Cammoun Xavier Gigandet Reto Meuli Christopher J. Honey J. Van Wedeen Olaf Sporns	PLoS Biology	2008		2,694	1
Earth mover's distance as a metric for image retrieval	Yossi Rubner Carlo Tomasi Leonidas J. Guibas	International Journal of Computer Vision	2000		2,608	1
Performance assessment of multiobjective optimizers: An analysis and review	Eckart Zitzler Lothar Thiele Marco Laumanns Carlos M. Fonseca Viviane Grunert Da Fonseca	IEEE Transactions on Evolutionary Computation	2003	Evolutionary algorithms Multiobjective optimization Performance assessment Quality indicator	2,599	1
Broken symmetries and the masses of gauge bosons	Peter W. Higgs	Physical Review Letters	1964		2,520	2
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information	Michael Zuker Patrick Stiegler	Nucleic Acids Research	1981		2,509	6
A new polynomial-time algorithm for linear programming	N. Karmarkar	Combinatorica	1984	AMS subject classification (1980): 90C05	2,501	8
Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty	J. M. Tanner R. H. Whitehouse	Archives of Disease in Childhood	1976		2,473	1
Decoherence, einselection, and the quantum origins of the classical	Wojciech Hubert Zurek	Reviews of Modern Physics	2003		2,432	6
Selforganization of matter and the evolution of biological macromolecules	Manfred Eigen	Die Naturwissenschaften	1971		2,364	9
Sparse coding with an overcomplete basis set: A strategy employed by V1?	Bruno A. Olshausen David J. Field	Vision Research	1997	Coding V1 Gabor-wavelet Natural images	2,350	0
Observation of parity-time symmetry in optics	Christian E. Rüter Konstantinos G. Makris Ramy El-Ganainy Demetrios N. Christodoulides Mordechai Segev Detlef Kip	Nature Physics	2010		2,205	0
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome	Nathaniel D. Heintzman Rhona K. Stuart Gary Hon Yutao Fu Christina W. Ching R. David Hawkins Leah O. Barrera Sara Van Calcar Chunxu Qu Keith A. Ching Wei Wang Zhiping Weng Roland D. Green Gregory E. Crawford Bing Ren	Nature Genetics	2007		2,195	0
Synthetic molecular motors and mechanical machines	Euan R. Kay David A. Leigh Francesco Zerbetto	Angewandte Chemie - International Edition	2007	Molecular devices Nanotechnology Noncovalent interactions Supramolecular chemistry	2,145	5
Zur Quantentheorie der Molekeln	M. Born R. Oppenheimer	Annalen der Physik	1927		2,136	3
Microstructure of a spatial map in the entorhinal cortex	Torkel Hafting Marianne Fyhn Sturla Molden May Britt Moser Edvard I. Moser	Nature	2005		2,120	2
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins	M. Lachner D. O'Carroll S. Rea K. Mechtler T. Jenuwein	Nature	2001		2,068	1
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain	Andrew J. Bannister Philip Zegerman Janet F. Partridge Eric A. Miska Jean O. Thomas Robin C. Allshire Tony Kouzarides	Nature	2001		2,052	0
What we can do and what we cannot do with fMRI	Nikos K. Logothetis	Nature	2008		2,005	0
Brownian motors: Noisy transport far from equilibrium	Peter Reimann	Physics Report	2002	Brownian motion Molecular motor Nonequilibrium process Periodic potential Ratchet Symmetry breaking Transport	1,980	5
Efficiency of a Carnot engine at maximum power output	F. L. Curzon B. Ahlborn	American Journal of Physics	1975		1,818	0
The human connectome: A structural description of the human brain	Olaf Sporns Giulio Tononi Rolf Kötter	PLoS Computational Biology	2005		1,793	2
Some informational aspects of visual perception	Fred Attneave	Psychological Review	1954	& ASPECTS INFORMATION INFORMATION THEORY PERCEPTION VISION VISUAL VISUAL PERCEPTION	1,725	0
Functional nucleic acid sensors	Juewen Liu Zehui Cao Yi Lu	Chemical Reviews	2009		1,646	3
Histone modifications at human enhancers reflect global cell-type-specific gene expression	Nathaniel D. Heintzman Gary C. Hon R. David Hawkins Pouya Kheradpour Alexander Stark Lindsey F. Harp Zhen Ye Leonard K. Lee Rhona K. Stuart Christina W. Ching Keith A. Ching Jessica E. Antosiewicz-Bourget Hui Liu Xinmin Zhang Roland D. Green Victor V. Lobanenkov Ron Stewart James A. Thomson Gregory E. Crawford Manolis Kellis Bing Ren	Nature	2009		1,640	0
A DNA-fuelled molecular machine made of DNA	Bernard Yurke Andrew J. Turberfield Allen P. Mills Friedrich C. Simmel Jennifer L. Neumann	Nature	2000		1,619	38
Conservative logic	Edward Fredkin Tommaso Toffoli	International Journal of Theoretical Physics	1982		1,577	6
Small-world brain networks	Danielle Smith Bassett Ed Bullmore	Neuroscientist	2006	Functional magnetic resonance imaging Graph theory Human brain functional networks Small-world network	1,534	0
Efficiency and cost of economical brain functional networks	Sophie Achard Ed Bullmore	PLoS Computational Biology	2007		1,526	0
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences	Gavin Crooks	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	1999		1,519	5
The 'independent components' of natural scenes are edge filters	Anthony J. Bell Terrence J. Sejnowski	Vision Research	1997	Independent components Information theory Neural network learning	1,469	1
Stochastic thermodynamics, fluctuation theorems and molecular machines	Udo Seifert	Reports on Progress in Physics	2012		1,467	43
Organization, development and function of complex brain networks	Olaf Sporns Dante R. Chialvo Marcus Kaiser Claus C. Hilgetag	Trends in Cognitive Sciences	2004		1,425	5
Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework	Stanislas Dehaene Lionel Naccache	Cognition	2001	Attention Awareness Consciousness Priming	1,395	0
Chemotaxis in Escherichia coli analysed by three-dimensional tracking	Howard C. Berg Douglas A. Brown	Nature	1972		1,384	15
A Map of the Interactome Network of the Metazoan C. elegans	Siming Li Christopher M. Armstrong Nicolas Bertin Hui Ge Stuart Milstein Mike Boxem Pierre Olivier Vidalain Jing Dong J. Han Alban Chesneau Tong Hao Debra S. Goldberg Ning Li Monica Martinez Jean François Rual Philippe Lamesch Lai Xu Muneesh Tewari Sharyl L. Wong Lan V. Zhang Gabriel F. Berriz Laurent Jacotot Philippe Vaglio Jérôme Reboul Tomoko Hirozane-Kishikawa Qianru Li Harrison W. Gabel Ahmed Elewa Bridget Baumgartner Debra J. Rose Haiyuan Yu Stephanie Bosak Reynaldo Sequerra Andrew Fraser Susan E. Mango William M. Saxton Susan Strome Sander v. Van Den Heuvel Fabio Piano Jean Vandenhaute Claude Sardet Mark Gerstein Lynn Doucette-Stamm Kristin C. Gunsalus J. Wade Harper Michael E. Cusick Frederick P. Roth David E. Hill Marc Vidal	Science	2004		1,353	1
Response and habituation of the human amygdala during visual processing of facial expression	Hans C. Breiter Nancy L. Etcoff Paul J. Whalen William A. Kennedy Scott L. Rauch Randy L. Buckner Monica M. Strauss Steven E. Hyman Bruce R. Rosen	Neuron	1996		1,337	0
Physics of chemoreception	H. C. Berg E. M. Purcell	Biophysical Journal	1977		1,270	0
Dynamical ensembles in nonequilibrium statistical mechanics	G. Gallavotti E. G.D. Cohen	Physical Review Letters	1995		1,261	0
Probability of second law violations in shearing steady states	Denis J. Evans G. P. Morriss E. G.D. Cohen	Physical Review Letters	1993		1,232	3
A tension-based theory of morphogenesis and compact wiring in the central nervous system	David C. Van Essen	Nature	1997		1,186	11
Cosmological experiments in superfluid helium?	W. H. Zurek	Nature	1985		1,164	0
Network modelling methods for FMRI	Stephen M. Smith Karla L. Miller Gholamreza Salimi-Khorshidi Matthew Webster Christian F. Beckmann Thomas E. Nichols Joseph D. Ramsey Mark W. Woolrich	NeuroImage	2011	Causality FMRI Network modelling	1,142	0
Fluctuations and irreversible processes	L. Onsager S. MacHlup	Physical Review	1953		1,123	0
Experimental and Theoretical Approaches to Conscious Processing	Stanislas Dehaene Jean Pierre Changeux	Neuron	2011		1,118	7
Complex Extension of Quantum Mechanics	Carl M. Bender Dorje C. Brody Hugh F. Jones	Physical Review Letters	2002		1,108	3
Bayesian integration in sensorimotor learning	Konrad P. Körding Daniel M. Wolpert	Nature	2004		1,090	0
Making molecular machines work	Wesley R. Browne Ben L. Feringa	Nature Nanotechnology	2006		1,089	1
Robustness in simple biochemical networks	N. Barkai S. Leibler	Nature	1997		1,079	0
Optimization, approximation, and complexity classes	Christos H. Papadimitriou Mihalis Yannakakis	Journal of Computer and System Sciences	1991		1,069	0
Time-frequency dynamics of resting-state brain connectivity measured with fMRI	Catie Chang Gary H. Glover	NeuroImage	2010	Default mode network Dynamics Functional connectivity Functional magnetic resonance imaging Negative correlations Networks Nonstationarity Resting state Spontaneous activity Wavelets	1,064	8
The thermodynamics of computation-a review	Charles H. Bennett	International Journal of Theoretical Physics	1982		1,058	30
Dynamic DNA nanotechnology using strand-displacement reactions	David Yu Zhang Georg Seelig	Nature Chemistry	2011		1,044	5
RAS oncogenes: Weaving a tumorigenic web	Yuliya Pylayeva-Gupta Elda Grabocka Dafna Bar-Sagi	Nature Reviews Cancer	2011		1,035	3
Enzyme-free nucleic acid logic circuits	Georg Seelig David Soloveichik David Yu Zhang Erik Winfree	Science	2006		1,025	6
Invariant visual representation by single neurons in the human brain	R. Quian Quiroga L. Reddy G. Kreiman C. Koch I. Fried	Nature	2005		1,003	0
Information, Physics, and Computation	Marc Mézard Andrea Montanari	Information, Physics, and Computation	2009	Belief propagation Cavity method Constraint satisfaction Density evolution Error correcting codes Message passing Phase transition Satisfiability Spin glasses Survey propagation	998	32
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification	Minjia Tan Hao Luo Sangkyu Lee Fulai Jin Jeong Soo Yang Emilie Montellier Thierry Buchou Zhongyi Cheng Sophie Rousseaux Nisha Rajagopal Zhike Lu Zhen Ye Qin Zhu Joanna Wysocka Yang Ye Saadi Khochbin Bing Ren Yingming Zhao	Cell	2011		977	0
Functional brain networks develop from a "local to distributed" organization	Damien A. Fair Alexander L. Cohen Jonathan D. Power Jessica A. Church Francis M. Miezin Bradley L. Schlaggar Steven E. Petersen Nico U.F. Dosenbach	PLoS Computational Biology	2009		977	0
Superfamilies of Evolved and Designed Networks	Ron Milo Shalev Itzkovitz Nadav Kashtan Reuven Levitt Shai Shen-Orr Inbal Ayzenshtat Michal Sheffer Uri Alon	Science	2004		968	0
Programming biomolecular self-assembly pathways	Peng Yin Harry M.T. Choi Colby R. Calvert Niles A. Pierce	Nature	2008		963	1
The large deviation approach to statistical mechanics	Hugo Touchette	Physics Reports	2009		961	10
Summing up the noise in gene networks	Johan Paulsson	Nature	2004		959	1
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach	C. Jarzynski	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	1997		946	5
Neurophysiological architecture of functional magnetic resonance images of human brain	Raymond Salvador John Suckling Martin R. Coleman John D. Pickard David Menon Ed Bullmore	Cerebral Cortex	2005	Connectivity Multivariate Network Scaling Symmetry Systems	944	0
A general model for the structure and allometry of plant vascular systems	Geoffrey B. West James H. Brown Brian J. Enquist	Nature	1999		943	0
Small-world networks and functional connectivity in Alzheimer's disease	C. J. Stam B. F. Jones G. Nolte M. Breakspear Ph Scheltens	Cerebral Cortex	2007	Alzheimer's disease Complexity EEG Small-world network Synchronization	931	0
Ramanujan graphs	A. Lubotzky R. Phillips P. Sarnak	Combinatorica	1988	AMS subject classification (1980): 05C35	898	7
Entropy production along a stochastic trajectory and an integral fluctuation theorem	Udo Seifert	Physical Review Letters	2005		878	14
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality	Jan Liphardt Sophie Dumont Steven B. Smith Ignacio Tinoco Carlos Bustamante	Science	2002		877	0
Phosphorylation and regulation of Raf by Akt (protein kinase B)	Sven Zimmermann Karin Moelling	Science	1999		872	0
Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver.	E. R. Weibel W. Stäubli H. R. Gnägi F. A. Hess	The Journal of cell biology	1969		856	0
Robustness in bacterial chemotaxis	U. Alon M. G. Surette N. Barkai S. Leibler	Nature	1999		856	0
An information integration theory of consciousness	Giulio Tononi	BMC Neuroscience	2004		853	1
Sparse coding and decorrelation in primary visual cortex during natural vision	William E. Vinje Jack L. Gallant	Science	2000		842	0
A (sub)graph isomorphism algorithm for matching large graphs	Luigi P. Cordella Pasquale Foggia Carlo Sansone Mario Vento	IEEE Transactions on Pattern Analysis and Machine Intelligence	2004		833	10
The second wave of synthetic biology: From modules to systems	Priscilla E.M. Purnick Ron Weiss	Nature Reviews Molecular Cell Biology	2009		811	5
Macromolecular crowding: An important but neglected aspect of the intracellular environment	R. J. Ellis	Current Opinion in Structural Biology	2001		797	2
Control of DNA strand displacement kinetics using toehold exchange	David Yu Zhang Erik Winfree	Journal of the American Chemical Society	2009		793	4
Disrupted small-world networks in schizophrenia	Yong Liu Meng Liang Yuan Zhou Yong He Yihui Hao Ming Song Chunshui Yu Haihong Liu Zhening Liu Tianzi Jiang	Brain	2008	Brain functional networks Efficient small-world Functional connectivity Resting-state fMRI Schizophrenia	789	2
The structure and function of the homeodomain	Matthew P. Scott John W. Tamkun George W. Hartzell	BBA - Reviews on Cancer	1989		780	0
Quantum mechanical computers	Richard P. Feynman	Foundations of Physics	1986		774	4
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen	L. Szilard	Zeitschrift für Physik	1929		773	2
The fundamental plan of the retina	R. H. Masland	Nature Neuroscience	2001		772	2
Genome evolution and adaptation in a long-term experiment with Escherichia coli	Jeffrey E. Barrick Dong Su Yu Sung Ho Yoon Haeyoung Jeong Tae Kwang Oh Dominique Schneider Richard E. Lenski Jihyun F. Kim	Nature	2009		765	1
Identification and classification of hubs in brain networks	Olaf Sporns Christopher J. Honey Rolf Kötter	PLoS ONE	2007		760	0
Finite time thermodynamic optimization or entropy generation minimization of energy systems	Lingen Chen Chih Wu Fengrui Sun	Journal of Non-Equilibrium Thermodynamics	1999		760	3
Role of the polycomb protein EED in the propagation of repressive histone marks	Raphael Margueron Neil Justin Katsuhito Ohno Miriam L. Sharpe Jinsook Son William J. Drury Philipp Voigt Stephen R. Martin William R. Taylor Valeria De Marco Vincenzo Pirrotta Danny Reinberg Steven J. Gamblin	Nature	2009		755	0
Self-Organization in a Perceptual Network	Ralph Linsker	Computer	1988		752	4
Exciton-polariton Bose-Einstein condensation	Hui Deng Hartmut Haug Yoshihisa Yamamoto	Reviews of Modern Physics	2010		743	2
A general model for ontogenetic growth	Geoffrey B. West James H. Brown Brian J. Enquist	Nature	2001		740	1
Coding of Odors by a Receptor Repertoire	Elissa A. Hallem John R. Carlson	Cell	2006		739	1
Path-ensemble averages in systems driven far from equilibrium	Gavin Crooks	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	2000		739	4
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies	D. Collin F. Ritort C. Jarzynski S. B. Smith I. Tinoco C. Bustamante	Nature	2005		737	1
An analytical solution to the kinetics of breakable filament assembly	Christopher A. Waudby Glyn L. Devlin Adriano Aguzzi Michele Vendruscolo Eugene M. Terentjev Mark E. Welland Christopher M. Dobson Tuomas P.J. Knowles Samuel I.A. Cohen	Science	2009		731	0
Yeast HOG1 MAP kinase cascade is regulated by a multistep phosphorelay mechanism in the SLN1-YPD1-SSK1 'two-component' osmosensor	Francesc Posas Susannah M. Wurgler-Murphy Tatsuya Maeda Elizabeth A. Witten Tran Cam Thai Haruo Saito	Cell	1996		722	0
A rigorous derivation of the chemical master equation	Daniel T. Gillespie	Physica A: Statistical Mechanics and its Applications	1992		719	11
Improved decoding of reed-solomon and algebraic-geometry codes	Venkatesan Guruswami Madhu Sudan	IEEE Transactions on Information Theory	1999	Algebraic-geometry codes Decoding algorithms Error-correcting codes List decoding Polynomial time algorithms Reed-solomon codes	718	1
Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights	Anatole S. Dekaban Doris Sadowsky	Annals of Neurology	1978		716	34
Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics)	Michele Campisi Peter Hänggi Peter Talkner	Reviews of Modern Physics	2011		716	0
The TAU parallel performance system	Sameer S. Shende Allen D. Malony	International Journal of High Performance Computing Applications	2006	Analysis Instrumentation Measurement Performance evaluation TAU	708	0
Variability, compensation and homeostasis in neuron and network function	Eve Marder Jean Marc Goaillard	Nature Reviews Neuroscience	2006		704	0
Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics	Leticia F. Cugliandolo Jorge Kurchan Luca Peliti	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	1997		704	1
Nucleosome positioning and gene regulation: Advances through genomics	Cizhong Jiang B. Franklin Pugh	Nature Reviews Genetics	2009		696	2
Consciousness as integrated information: A provisional manifesto	Giulio Tononi	Biological Bulletin	2008		667	2
The olfactory bulb: Coding and processing of odor molecule information	Kensaku Mori Hiroshi Nagao Yoshihiro Yoshihara	Science	1999		661	0
The quiet revolution of numerical weather prediction	Peter Bauer Alan Thorpe Gilbert Brunet	Nature	2015		657	7
Structure and function of a human TAF(II)250 double bromodomain module	Raymond H. Jacobson Andreas G. Ladurner David S. King Robert Tjian	Science	2000		648	0
The neural basis of functional brain imaging signals	David Attwell Costantino Iadecola	Trends in Neurosciences	2002		643	1
Energy use constrains brain information processing	Julia J. Harris Renaud Jolivet David Attwell	Neuron	2012		642	8
Pushing the limits of lithography	Takashi Ito Shinji Okazaki	Nature	2000		640	0
Network theory of microscopic and macroscopic behavior of master equation systems	J. Schnakenberg	Reviews of Modern Physics	1976		631	1
General mass action kinetics	F. Horn R. Jackson	Archive for Rational Mechanics and Analysis	1972		629	0
The energetics of genome complexity	Nick Lane William Martin	Nature	2010		627	0
Modular and hierarchically modular organization of brain networks	David Meunier Renaud Lambiotte Edward T. Bullmore	Frontiers in Neuroscience	2010	Cortex Fractal Graph Near-decomposability Partition	617	0
The cost of cortical computation	Peter Lennie	Current Biology	2003		616	1
Spontaneously emerging cortical representations of visual attributes	Tal Kenet Dmitri Bibitchkov Misha Tsodyks Amiram Grinvald Amos Arieli	Nature	2003		615	1
Nonequilibrium mechanics of active cytoskeletal networks	Daisuke Mizuno Catherine Tardin C. F. Schmidt F. C. MacKintosh	Science	2007		614	0
Neural network computation with DNA strand displacement cascades	Lulu Qian Erik Winfree Jehoshua Bruck	Nature	2011		608	7
Communication in neuronal networks	Simon B. Laughlin Terrence J. Sejnowski	Science	2003		604	0
Experimental verification of Landauer's principle linking information and thermodynamics	Antoine Bérut Artak Arakelyan Artyom Petrosyan Sergio Ciliberto Raoul Dillenschneider Eric Lutz	Nature	2012		598	4
Approximate computing: An emerging paradigm for energy-efficient design	Jie Han Michael Orshansky	Proceedings - 2013 18th IEEE European Test Symposium, ETS 2013	2013	adder approximate computing low-energy design multiplier probabilistic computing stochastic computation	592	5
Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations	Jörn Niessing Boris Ebisch Kerstin E. Schmidt Michael Niessing Wolf Singer Ralf A.W. Galuske	Science	2005		589	1
The conscious access hypothesis: Origins and recent evidence	Bernard J. Baars	Trends in Cognitive Sciences	2002		584	5
Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior	Michael D. Fox Abraham Z. Snyder Justin L. Vincent Marcus E. Raichle	Neuron	2007	SYSBIO SYSNEURO	583	0
Equilibrium microstates which generate second law violating steady states	Denis J. Evans Debra J. Searles	Physical Review E	1994		583	2
Laser cooling of atoms	D. J. Wineland Wayne M. Itano	Physical Review A	1979		583	0
Localization transitions in non-hermitian quantum mechanics	Naomichi Hatano David R. Nelson	Physical Review Letters	1996		579	0
Defining Network Topologies that Can Achieve Biochemical Adaptation	Wenzhe Ma Ala Trusina Hana El-Samad Wendell A. Lim Chao Tang	Cell	2009	SYSBIO	577	1
A simple coding procedure enhances a neuron’s information capacity	Simon Laughlin	Zeitschrift fur Naturforschung - Section C Journal of Biosciences	1981	Contrast Fly Eye Information Theory Neural Coding	576	8
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM	Louis Sokoloff	Journal of Neurochemistry	1977		571	0
Development of large-scale functional brain networks in children	Kaustubh Supekar Mark Musen Vinod Menon	PLoS Biology	2009		570	0
Human brain networks in health and disease	Danielle S. Bassett Edward T. Bullmore	Current Opinion in Neurology	2009	Graph Modularity Network Small world Wiring cost	569	2
Programmable and autonomous computing machine made of biomolecules	Yaakov Benenson Tamar Paz-Elizur Rivka Adar Ehud Keinan Zvi Llvneh Ehud Shapiro	Nature	2001		563	6
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network	N. M. Van Strien M. P. Witter N. L.M. Cappaert	Nature Reviews Neuroscience	2009		562	5
RNA sequence analysis using covariance models	Sean R. Eddy Richard Durbin	Nucleic Acids Research	1994		554	0
Ultimate physical limits to computation	Seth Lloyd	Nature	2000		549	12
Emergent complex neural dynamics	Dante R. Chialvo	Nature Physics	2010		548	6
Nucleosome organization in the Drosophila genome	Travis N. Mavrich Cizhong Jiang Ilya P. Ioshikhes Xiaoyong Li Bryan J. Venters Sara J. Zanton Lynn P. Tomsho Ji Qi Robert L. Glaser Stephan C. Schuster David S. Gilmour Istvan Albert B. Franklin Pugh	Nature	2008		536	0
Epigenetics in alternative pre-mRNA splicing	Reini F. Luco Mariano Allo Ignacio E. Schor Alberto R. Kornblihtt Tom Misteli	Cell	2011		532	2
Age-related changes in modular organization of human brain functional networks	David Meunier Sophie Achard Alexa Morcom Ed Bullmore	NeuroImage	2009	Aging Complex networks Functional MRI Modularity	532	0
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes	Frank Jühling Mario Mörl Roland K. Hartmann Mathias Sprinzl Joern Pütz Peter Stadler	Nucleic Acids Research	2009		524	1
Integration of quanta in cerebellar granule cells during sensory processing	Paul Chadderton Troy W. Margie Michael Häusser	Nature	2004		519	1
The intractability of resolution	Armin Haken	Theoretical Computer Science	1985		515	2
A model for transmission of the H3K27me3 epigenetic mark	Klaus H. Hansen Adrian P. Bracken Diego Pasini Nikolaj Dietrich Simmi S. Gehani Astrid Monrad Juri Rappsilber Mads Lerdrup Kristian Helin	Nature Cell Biology	2008		514	0
Olfactory network dynamics and the coding of multidimensional signals	Gilles Laurent	Nature Reviews Neuroscience	2002		512	3
Evolution of the brain and intelligence	Gerhard Roth Ursula Dicke	Trends in Cognitive Sciences	2005		505	1
Hardness vs randomness	Noam Nisan Avi Wigderson	Journal of Computer and System Sciences	1994		504	3
Steady-state thermodynamics of Langevin systems	T. Hatano S. Sasa	Physical Review Letters	2001		502	0
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality	Shoichi Toyabe Takahiro Sagawa Masahito Ueda Eiro Muneyuki Masaki Sano	Nature Physics	2010		499	22
CNS energy metabolism as related to function	Adelbert Ames	Brain Research Reviews	2000	Adenylate kinase Aerobic glycolysis CNS Calcium Carbonic anhydrase Creatine kinase Energy metabolism	493	0
Optimality and evolutionary tuning of the expression level of a protein	Erez Dekel Uri Alon	Nature	2005		492	8
Kinetic amplification of enzyme discrimination	Jacques Ninio	Biochimie	1975		491	2
Fundamental aspects of protein - Protein association kinetics	G. Schreiber G. Haran H. X. Zhou	Chemical Reviews	2009		486	3
The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machines	Paul Benioff	Journal of Statistical Physics	1980	Coleman model approximation Computer as a physical system Schrödinger equation description of Turing machines closed conservative system microscopic Hamiltonian models of computers quantum spin lattices	479	30
Of dreaming and wakefulness	R. R. Llinás D. Paré	Neuroscience	1991		477	0
Channel noise in neurons	John A. White Jay T. Rubinstein Alan R. Kay	Trends in Neurosciences	2000		476	0
Chromatin structure and the inheritance of epigenetic information	Raphaël Margueron Danny Reinberg	Nature Reviews Genetics	2010		474	0
Perceiving the epigenetic landscape through histone readers	Catherine A. Musselman Marie Eve Lalonde Jacques Côté Tatiana G. Kutateladze	Nature Structural and Molecular Biology	2012		474	2
Non-equilibrium steady states: Fluctuations and large deviations of the density and of the current	Bernard Derrida	Journal of Statistical Mechanics: Theory and Experiment	2007	Current fluctuations Driven diffusive systems (theory) Large deviations in non-equilibrium systems Stationary states	474	0
Bacterial chemoreceptors: high-performance signaling in networked arrays	Gerald L. Hazelbauer Joseph J. Falke John S. Parkinson	Trends in Biochemical Sciences	2008		472	4
Schizophrenia, neuroimaging and connectomics	Alex Fornito Andrew Zalesky Christos Pantelis Edward T. Bullmore	NeuroImage	2012	Complex Cortex DTI FMRI Resting state Small world	472	1
Consensus paper: The cerebellum's role in movement and cognition	Leonard F. Koziol Deborah Budding Nancy Andreasen Stefano D'Arrigo Sara Bulgheroni Hiroshi Imamizu Masao Ito Mario Manto Cherie Marvel Krystal Parker Giovanni Pezzulo Narender Ramnani Daria Riva Jeremy Schmahmann Larry Vandervert Tadashi Yamazaki	Cerebellum	2014	Cerebellum Cognition Cognitive Executive function Language Motor Movement Neurodevelopment	465	3
Extracting work from a single heat bath via vanishing quantum coherence	Marlan O. Scully M. Suhail Zubairy Girish S. Agarwal Herbert Walther	Science	2003		462	4
Probing the Limits to Positional Information	Thomas Gregor David W. Tank Eric F. Wieschaus William Bialek	Cell	2007	DEVBIO	461	4
Speed and accuracy of olfactory discrimination in the rat	Naoshige Uchida Zachary F. Mainen	Nature Neuroscience	2003		458	0
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing	Gunnar Schotta Anja Ebert Veiko Krauss Andreas Fischer Jan Hoffmann Stephen Rea Thomas Jenuwein Rainer Dorn Gunter Reuter	EMBO Journal	2002	Gene silencing H3-K9 methylation Heterochromatin SU(VAR)3-9	457	0
Thermodynamics of information	Juan M.R. Parrondo Jordan M. Horowitz Takahiro Sagawa	Nature Physics	2015		454	57
Solution of a 20-variable 3-SAT problem on a DNA computer	Ravinderjit S. Braich Nickolas Chelyapov Cliff Johnson Paul W.K. Rothemund Leonard Adleman	Science	2002		447	1
Structural properties of the Caenorhabditis elegans neuronal network	Lav R. Varshney Beth L. Chen Eric Paniagua David H. Hall Dmitri B. Chklovskii	PLoS Computational Biology	2011		446	1
Uncovering intrinsic modular organization of spontaneous brain activity in humans	Yong He Jinhui Wang Liang Wang Zhang J. Chen Chaogan Yan Hong Yang Hehan Tang Chaozhe Zhu Qiyong Gong Yufeng Zang Alan C. Evans	PLoS ONE	2009		441	0
A molecular information ratchet	Viviana Serreli Chin Fa Lee Euan R. Kay David A. Leigh	Nature	2007		438	2
Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks	Andrea Hasenstaub Yousheng Shu Bilal Haider Udo Kraushaar Alvaro Duque David A. McCormick	Neuron	2005		436	0
Probabilistic algorithm for testing primality	Michael O. Rabin	Journal of Number Theory	1980		434	1
Low-power digital signal processing using approximate adders	Vaibhav Gupta Debabrata Mohapatra Anand Raghunathan Kaushik Roy	IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems	2013	Approximate computing low power mirror adder	433	12
Building programmable jigsaw puzzles with RNA	Arkadiusz Chworos Isil Severcan Alexey Y. Koyfman Patrick Weinkam Emin Oroudjev Helen G. Hansma Luc Jaeger	Science	2004		428	1
Genetic programming as a means for programming computers by natural selection	John R. Koza	Statistics and Computing	1994	Boolean 11-multiplexer Boolean 11-parity Genetic programming crossover econometric exchange equation genetic algorithm hierarchical automatic function definition symbolic regression	428	2
Modelling dynamical processes in complex socio-technical systems	Alessandro Vespignani	Nature Physics	2012		427	5
Chromatin organization marks exon-intron structure	Schraga Schwartz Eran Meshorer Gil Ast	Nature Structural and Molecular Biology	2009		426	0
Brain anatomical network and intelligence	Yonghui Li Yong Liu Jun Li Wen Qin Kuncheng Li Chunshui Yu Tianzi Jiang	PLoS Computational Biology	2009		424	2
Molecular taxonomy of major neuronal classes in the adult mouse forebrain	Ken Sugino Chris M. Hempel Mark N. Miller Alexis M. Hattox Peter Shapiro Caizi Wu Z. Josh Huang Sacha B. Nelson	Nature Neuroscience	2006		416	0
Fluctuation theorems: Work is not an observable	Peter Talkner Eric Lutz Peter Hänggi	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		414	0
Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems	Marcus Kaiser Claus C. Hilgetag	PLoS Computational Biology	2006		412	0
The evolutionary origin of complex features	Richard E. Lenski Charles Ofria Robert T. Pennock Christoph Adami	Nature	2003		407	2
On the complexity of the parity argument and other inefficient proofs of existence	Christos H. Papadimitriou	Journal of Computer and System Sciences	1994		405	3
Probabilistic mapping and volume measurement of human primary auditory cortex	J. Rademacher P. Morosan T. Schormann A. Schleicher C. Werner H. J. Freund K. Zilles	NeuroImage	2001	Auditory cortex Brain mapping Cytoarchitecture Human cerebral cortex Image analysis	405	0
High-energy behavior in quantum field theory	Steven Weinberg	Physical Review	1960		402	5
Neurophysiology of the BOLD fMRI Signal in Awake Monkeys	Nikos K. Logothetis Jozien B.M. Goense	Current Biology	2008	SYSNEURO	397	0
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host	Winston Timp Andrew P. Feinberg	Nature Reviews Cancer	2013		392	1
Low-Power Digital Systems Based on Adiabatic-Switching Principles	William C. Athas J. Svensson Jeffrey G. Koller Nestoras Tzartzanis Ying Chin Chou	IEEE Transactions on Very Large Scale Integration (VLSI) Systems	1994	Adiabatic amplification adiabatic charging adiabatic switching low-power CMOS reversible computation switching energy reduction with preserved signal energies	392	1
Good practices in free-energy calculations	Andrew Pohorille Christopher Jarzynski Christophe Chipot	Journal of Physical Chemistry B	2010		388	11
Vertex cover might be hard to approximate to within 2 - ε	Subhash Khot Oded Regev	Journal of Computer and System Sciences	2008	Hardness of approximation Unique games conjecture Vertex cover	386	0
The quantum open system as a model of the heat engine	R. Alicki	Journal of Physics A: General Physics	1979		381	4
The superfamily of heme-copper respiratory oxidases	J. A. Garcia-Horsman B. Barquera J. Rumbley J. Ma R. B. Gennis	Journal of Bacteriology	1994		379	0
Energetic basis of brain activity: Implications for neuroimaging	Robert G. Shulman Douglas L. Rothman Kevin L. Behar Fahmeed Hyder	Trends in Neurosciences	2004		379	0
Approximate counting, uniform generation and rapidly mixing Markov chains	Alistair Sinclair Mark Jerrum	Information and Computation	1989		376	0
Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins	Christopher Dean Meave G. Leakey Donald Reid Friedemann Schrenk Gary T. Schwartz Christopher Stringer Alan Walker	Nature	2001		372	0
Stochastic neural computation I: Computational elements	Bradley D. Brown Howard C. Card	IEEE Transactions on Computers	2001	Computational elements Pulsed neural networks Stochastic arithmetic	368	12
Representation of odorants by receptor neuron input to the mouse olfactory bulb	Matt Wachowiak Lawrence B. Cohen	Neuron	2001		367	0
The neural correlates of consciousness: An update	Giulio Tononi Christof Koch	Annals of the New York Academy of Sciences	2008	Brain Consciousness Information	363	1
Microbial life under extreme energy limitation	Tori M. Hoehler Bo Barker Jørgensen	Nature Reviews Microbiology	2013		355	3
Energy as a constraint on the coding and processing of sensory information	S. B. Laughlin	Current Opinion in Neurobiology	2001		353	4
Matching is as easy as matrix inversion	Ketan Mulmuley Umesh V. Vazirani Vijay V. Vazirani	Combinatorica	1987	05C25 AMS subject classification (1980): 68E10	351	1
The entorhinal grid map is discretized	Hanne Stensola Tor Stensola Trygve Solstad Kristian FrØland May Britt Moser Edvard I. Moser	Nature	2012		350	3
Readers of histone modifications	Miyong Yun Jun Wu Jerry L. Workman Bing Li	Cell Research	2011	chromatin epigenetics histone modification	347	0
Modeling the impact of lesions in the human brain	Jeffrey Alstott Michael Breakspear Patric Hagmann Leila Cammoun Olaf Sporns	PLoS Computational Biology	2009		347	0
The relationship between stochastic and deterministic models for chemical reactions	Thomas G. Kurtz	The Journal of Chemical Physics	1972		340	4
Functional organization of rat olfactory bulb analysed by the 2‐deoxyglucose method	William B. Stewart John S. Kauer Gordon M. Shepherd	Journal of Comparative Neurology	1979		340	0
Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow.	B. R. Duling R. M. Berne	Circulation research	1970		340	0
Small-world properties of nonlinear brain activity in schizophrenia	Mikail Rubinov Stuart A. Knock Cornelis J. Stam Sifis Micheloyannis Anthony W.F. Harris Leanne M. Williams Michael Breakspear	Human Brain Mapping	2009		338	1
Disrupted axonal fiber connectivity in schizophrenia	Andrew Zalesky Alex Fornito Marc L. Seal Luca Cocchi Carl Fredrik Westin Edward T. Bullmore Gary F. Egan Christos Pantelis	Biological Psychiatry	2011	Axonal connectivity Diffusion tensor imaging Network Schizophrenia Tractography White-matter	335	5
Revealing modular architecture of human brain structural networks by using cortical thickness from MRI	Zhang J. Chen Yong He Pedro Rosa-Neto Jurgen Germann Alan C. Evans	Cerebral Cortex	2008	Betweenness centrality Cortical thickness MRI Modularity Morphometry Network Small world	335	2
Programmable chemical controllers made from DNA	Yuan Jyue Chen Neil Dalchau Niranjan Srinivas Andrew Phillips Luca Cardelli David Soloveichik Georg Seelig	Nature Nanotechnology	2013		331	4
Representations of Odor in the Piriform Cortex	Dan D. Stettler Richard Axel	Neuron	2009	SIGNALING SYSNEURO	331	0
Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose	D. M. Bier R. D. Leake M. W. Haymond K. J. Arnold L. D. Gruenke M. A. Sperling D. M. Kipnis	Diabetes	1977		328	0
Programming DNA tube circumferences	Peng Yin Rizal F. Hariadi Sudheer Sahu Harry M.T. Choi Ha Park Sung Thomas H. LaBean John H. Reif	Science	2008		327	0
Efficiency at maximum power: An analytically solvable model for stochastic heat engines	T. Schmiedl Udo Seifert	EPL	2008		327	4
Experience-dependent rescaling of entorhinal grids	Caswell Barry Robin Hayman Neil Burgess Kathryn J. Jeffery	Nature Neuroscience	2007		326	2
Colloquium: The physics of Maxwell's demon and information	Koji Maruyama Franco Nori Vlatko Vedral	Reviews of Modern Physics	2009		324	11
Nanoscale heat engine beyond the carnot limit	J. Roßnagel O. Abah F. Schmidt-Kaler K. Singer E. Lutz	Physical Review Letters	2014		324	2
Computation in networks of passively mobile finite-state sensors	Dana Angluin James Aspnes Zoë Diamadi Michael J. Fischer René Peralta	Distributed Computing	2006	Diffuse computation Finite-state agent Intermittent communication Mobile agent Sensor net Stable computation	321	1
One-component systems dominate signal transduction in prokaryotes	Luke E. Ulrich Eugene V. Koonin Igor B. Zhulin	Trends in Microbiology	2005		320	1
Giant acceleration of free diffusion by use of tilted periodic potentials	P. Reimann H. Linke P. Hänggi J. M. Rubi A. Pérez-Madrid C. Van Den Broeck	Physical Review Letters	2001		320	0
The neural code of the retina	Markus Meister Michael J. Berry	Neuron	1999		313	0
Reversible thermoelectric nanomaterials	T. E. Humphrey H. Linke	Physical Review Letters	2005		311	0
Current trends in finite-time thermodynamics	Bjarne Andresen	Angewandte Chemie - International Edition	2011	distillation finite-time thermodynamics heat engine optimization thermodynamics	308	1
Small modulation of ongoing cortical dynamics by sensory input during natural vision	József Fiser Chiayu Chiu Michael Weliky	Nature	2004		305	0
Rapid Neocortical Dynamics: Cellular and Network Mechanisms	Bilal Haider David A. McCormick	Neuron	2009		301	0
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain	Jeanne Morinière Sophie Rousseaux Ulrich Steuerwald Montserrat Soler-López Sandrine Curtet Anne Laure Vitte Jérme Govin Jonathan Gaucher Karin Sadoul Darren J. Hart Jeroen Krijgsveld Saadi Khochbin Christoph W. Müller Carlo Petosa	Nature	2009		298	1
Generalized Jarzynski equality under nonequilibrium feedback control	Takahiro Sagawa Masahito Ueda	Physical Review Letters	2010		296	3
Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity	Ahalya Viswanathan Ralph D. Freeman	Nature Neuroscience	2007		292	0
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport	T. Chou K. Mallick R. K.P. Zia	Reports on Progress in Physics	2011		292	2
Inhibition and Brain Work	György Buzsáki Kai Kaila Marcus Raichle	Neuron	2007		288	0
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence	A. Crisanti F. Ritort	Journal of Physics A: Mathematical and General	2003		288	0
The connectional organization of the cortico-thalamic system of the cat	J. W. Scannell G. A.P.C. Burns C. C. Hilgetag M. A. O'Neil M. P. Young	Cerebral Cortex	1999		287	0
Why do female primates have such long lifespans and so few babies? or Life in the slow lane	Eric L. Charnov David Berrigan	Evolutionary Anthropology: Issues, News, and Reviews	1993	Life history theory growth metabolism reproduction	287	0
Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex	Claus Mathiesen Kirsten Caesar Nuran Akgören Martin Lauritzen	Journal of Physiology	1998		285	1
Programmable ligand-controlled riboregulators of eukaryotic gene expression	Travis S. Bayer Christina D. Smolke	Nature Biotechnology	2005		281	0
Forward flux sampling for rare event simulations	Rosalind J. Allen Chantal Valeriani Pieter Rein ten Wolde	Journal of Physics Condensed Matter	2009		277	0
Lower bounds for resolution and cutting plane proofs and monotone computations	Pavel Pudlák	Journal of Symbolic Logic	1997		276	0
Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification	Ian B. Dodd Mille A. Micheelsen Kim Sneppen Geneviève Thon	Cell	2007	SYSBIO	276	0
Fluctuation theorems for stochastic dynamics	R. J. Harris G. M. Schütz	Journal of Statistical Mechanics: Theory and Experiment	2007	Driven diffusive systems (theory) Fluctuations (theory) Stochastic processes (theory)	276	6
Variable channel expression in identified single and electrically coupled neurons in different animals	David J. Schulz Jean Marc Goaillard Eve Marder	Nature Neuroscience	2006		271	0
Energetics and the evolution of human brain size	Ana Navarrete Carel P. Van Schaik Karin Isler	Nature	2011		271	1
Reversible Quantum Brownian Heat Engines for Electrons	T. E. Humphrey R. Newbury R. P. Taylor H. Linke	Physical Review Letters	2002		271	0
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice	Nixon M. Abraham Hartwig Spors Alan Carleton Troy W. Margrie Thomas Kuner Andreas T. Schaefer	Neuron	2004		270	0
End of Moore's law: Thermal (noise) death of integration in micro and nano electronics	Laszlo B. Kish	Physics Letters, Section A: General, Atomic and Solid State Physics	2002		269	1
Thermodynamic Uncertainty Relation for Biomolecular Processes	Andre C. Barato Udo Seifert	Physical Review Letters	2015		269	5
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3	Anders M. Lindroth David Shultis Zuzana Jasencakova Jörg Fuchs Lianna Johnson Daniel Schubert Debasis Patnaik Sriharsa Pradhan Justin Goodrich Ingo Schubert Thomas Jenuwein Sepideh Khorasanizadeh Steven E. Jacobsen	EMBO Journal	2004	Chromodomain DNA methylation Histone code Histone methylation	268	0
The lac repressor displays facilitated diffusion in living cells	Petter Hammar Prune Leroy Anel Mahmutovic Erik G. Marklund Otto G. Berg Johan Elf	Science	2012		268	0
A systems perspective on early olfactory coding	Gilles Laurent	Science	1999		268	0
Realization of a micrometre-sized stochastic heat engine	Valentin Blickle Clemens Bechinger	Nature Physics	2012		265	5
Lower bounds on the size of bounded depth circuits over a complete basis with logical addition	A. A. Razborov	Mathematical Notes of the Academy of Sciences of the USSR	1987		261	0
Natural Proofs	Alexander A. Razborov Steven Rudich	Journal of Computer and System Sciences	1997		261	6
Synthetic analog computation in living cells	Ramiz Daniel Jacob R. Rubens Rahul Sarpeshkar Timothy K. Lu	Nature	2013		260	4
Asymmetrically modified nucleosomes	Philipp Voigt Gary LeRoy William J. Drury Barry M. Zee Jinsook Son David B. Beck Nicolas L. Young Benjamin A. Garcia Danny Reinberg	Cell	2012		258	0
An architecture for fault-tolerant computation with stochastic logic	Weikang Qian Xin Li Marc D. Riedel Kia Bazargan David J. Lilja	IEEE Transactions on Computers	2011	Stochastic logic fault-tolerant computation reconfigurable hardware	257	0
Evidence for early life in Earth's oldest hydrothermal vent precipitates	Matthew S. Dodd Dominic Papineau Tor Grenne John F. Slack Martin Rittner Franco Pirajno Jonathan O'Neil Crispin T.S. Little	Nature	2017		256	2
Combined analog and action potential coding in hippocampal mossy fibers	Henrik Alle Jörg R.P. Geiger	Science	2006		255	0
Operating on chromatin, a colorful language where context matters	Kathryn E. Gardner C. David Allis Brian D. Strahl	Journal of Molecular Biology	2011	chromatin epigenetics histone code histones post-translational modifications	254	0
Efficient physical embedding of topologically complex information processing networks in brains and computer circuits	Danielle S. Bassett Daniel L. Greenfield Andreas Meyer-Lindenberg Daniel R. Weinberger Simon W. Moore Edward T. Bullmore	PLoS Computational Biology	2010		254	0
The physical nature of information	Rolf Landauer	Physics Letters, Section A: General, Atomic and Solid State Physics	1996		253	4
Pseudorandom generators for space-bounded computation	Noam Nisan	Combinatorica	1992	AMS subject classification code (1991): 68Q15	251	0
Invertible cellular automata: A review	Tommaso Toffoli Norman H. Margolus	Physica D: Nonlinear Phenomena	1990		249	4
Olfactory Bulb	Gordon M. Shepherd Wei R. Chen Charles A. Greer	The Synaptic Organization of the Brain	2004	Odor Olfactory system Sensory neurons Synaptic circuits Synaptic organization	249	0
Thermoelectric efficiency at maximum power in a quantum dot	K. Lindenberg C. Van Den Broeck Massimiliano Esposito	EPL	2009		247	1
Derandomizing polynomial identity tests means proving circuit lower bounds	Valentine Kabanets Russell Impagliazzo	Computational Complexity	2004	Circuit lower bounds Derandomization Hardness-randomness tradeoffs Polynomial identity testing	246	0
Dynamics and memory of heterochromatin in living cells	Nathaniel A. Hathaway Oliver Bell Courtney Hodges Erik L. Miller Dana S. Neel Gerald R. Crabtree	Cell	2012		245	0
Dynamical consequences of lesions in cortical networks	Christopher J. Honey Olaf Sporns	Human Brain Mapping	2008	Connectivity Graph theory Kuramoto model Lesion Network Neuroanatomy Robustness	243	1
Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard	T. Gao E. Estrecho K. Y. Bliokh T. C.H. Liew M. D. Fraser S. Brodbeck M. Kamp C. Schneider S. Höfling Y. Yamamoto F. Nori Y. S. Kivshar A. G. Truscott R. G. Dall E. A. Ostrovskaya	Nature	2015		243	0
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions	Alexander J. Ruthenburg Haitao Li Thomas A. Milne Scott Dewell Robert K. McGinty Melanie Yuen Beatrix Ueberheide Yali Dou Tom W. Muir Dinshaw J. Patel C. David Allis	Cell	2011		242	2
Yeast heterochromatin: Regulation of its assembly and inheritance by histones	Michael Grunstein	Cell	1998		241	0
Brain growth, life history, and cognition in primate and human evolution	S. R. Leigh	American Journal of Primatology	2004	Apes Brain development Monkeys Ontogeny	239	0
Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential	V. Blickle T. Speck L. Helden C. Bechinger Udo Seifert	Physical Review Letters	2006		239	2
Notes on Landauer's principle, reversible computation, and Maxwell's Demon	Charles H. Bennett	Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics	2003	Landauer's principle Maxwell's demon Second law of thermodynamics Thermodynamics of information processing	238	3
Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors	Emmanuel Hermans	Pharmacology and Therapeutics	2003	Agonist-selective trafficking of receptor signalling Desensitisation G-protein-coupled receptors Intracellular signalling Promiscuity Receptor regulation Specificity	236	3
Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex	Martin Billeter Yan Qiu Qian Gottfried Otting Martin Müller Walter Gehring Kurt Wüthrich	Journal of Molecular Biology	1993	13C-isotope labeling Antennapedia homeodomain NMR Protein-DNA complex Transcriptional regulation	235	3
Energetics of functional activation in neural tissues	Louis Sokoloff	Neurochemical Research	1999	Astrocyte Glucose utilization Glutamate K+- ATPase Na+ Potassium Sodium	232	0
Nucleosomes are well positioned in exons and carry characteristic histone modifications	Robin Andersson Stefan Enroth Alvaro Rada-Iglesias Claes Wadelius Jan Komorowski	Genome Research	2009		231	0
The physics of molecular motors	C. Bustamante D. Keller G. Oster	Accounts of Chemical Research	2001		230	0
Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9	Vesco Mutskov Gary Felsenfeld	EMBO Journal	2004	Chromatin DNA methylation Histone acetylation Histone methylation Transgene silencing	229	0
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering	Andrea Arcuri Lionel Briand	Software Testing Verification and Reliability	2014	Bonferroni adjustment confidence interval effect size nonparametric test parametric test statistical difference survey systematic review	228	3
Resurrecting ancient genes: Experimental analysis of extinct molecules	Joseph W. Thornton	Nature Reviews Genetics	2004		228	0
Necessary and sufficient conditions for complex balancing in chemical kinetics	F. Horn	Archive for Rational Mechanics and Analysis	1972		228	1
A small world of neuronal synchrony	Shan Yu Debin Huang Wolf Singer Danko Nikolić	Cerebral Cortex	2008	Ising model Maximum entropy Orientation selectivity Parallel recording Scale free Visual cortex	228	0
Resonances arising from hydrodynamic memory in Brownian motion	Thomas Franosch Matthias Grimm Maxim Belushkin Flavio M. Mor Giuseppe Foffi László Forró Sylvia Jeney	Nature	2011		228	0
Theory of reversible diffusion-influenced reactions	Noam Agmon Attila Szabo	The Journal of Chemical Physics	1990		227	0
Fluctuation theorem for arbitrary open quantum systems	Michele Campisi Peter Talkner Peter Hänggi	Physical Review Letters	2009		227	1
Minimal energy cost for thermodynamic information processing: Measurement and information erasure	Takahiro Sagawa Masahito Ueda	Physical Review Letters	2009		224	7
On the degree of boolean functions as real polynomials	Noam Nisan Mario Szegedy	Computational Complexity	1994	68Q99 Approximation Boolean functions Fourier degree Subject classifications: 68Q05 block sensitivity	223	1
The WUS homeobox-containing (WOX) protein family	Eric van der Graaff Thomas Laux Stefan A. Rensing	Genome Biology	2009		223	0
Low Power Microelectronics: Retrospect and Prospect	James D. Meindl	Proceedings of the IEEE	1995		221	1
Integrated information in discrete dynamical systems: Motivation and theoretical framework	David Balduzzi Giulio Tononi	PLoS Computational Biology	2008		221	3
Design principles of a bacterial signalling network	Markus Kollmann Linda Løvdok Kilian Bartholomé Jens Timmer Victor Sourjik	Nature	2005		220	0
The thermodynamic meaning of negative entropy	Lídia Del Rio Johan Åberg Renato Renner Oscar Dahlsten Vlatko Vedral	Nature	2011		220	9
Rare events and the convergence of exponentially averaged work values	Christopher Jarzynski	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		220	4
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory	David J. Katz T. Matthew Edwards Valerie Reinke William G. Kelly	Cell	2009		218	0
Structural sources of robustness in biochemical reaction networks	Guy Shinar Martin Feinberg	Science	2010		218	1
Insect olfactory receptors.	J. Boeckh K. E. Kaissling D. Schneider	Cold Spring Harbor symposia on quantitative biology	1965		218	0
Weight consistency specifies regularities of macaque cortical networks	N. T. Markov P. Misery A. Falchier C. Lamy J. Vezoli R. Quilodran M. A. Gariel P. Giroud M. Ercsey-Ravasz L. J. Pilaz C. Huissoud P. Barone C. Dehay Z. Toroczkai D. C. Van Essen H. Kennedy K. Knoblauch	Cerebral Cortex	2011	amygdala area 17 macaque network primate thalamus	216	0
Extension of the fluctuation theorem	R. van Zon E. G.D. Cohen	Physical Review Letters	2003		216	0
Genome-wide patterns of histone modifications in yeast	Catherine B. Millar Michael Grunstein	Nature Reviews Molecular Cell Biology	2006		215	0
Three faces of the second law. I. Master equation formulation2	Massimiliano Esposito Christian Van Den Broeck	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		212	8
Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulation	Frank R. Sharp John S. Kauer Gordon M. Shepherd	Brain Research	1975		212	0
The energy-speed-accuracy trade-off in sensory adaptation	Ganhui Lan Pablo Sartori Silke Neumann Victor Sourjik Yuhai Tu	Nature Physics	2012		212	0
Three faces of the second law. I. Master equation formulation	Massimiliano Esposito Christian Van Den Broeck	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		212	6
The energy–speed–accuracy trade-off in sensory adaptation	Ganhui Lan Pablo Sartori Silke Neumann Victor Sourjik Yuhai Tu	Nature Physics	2012		212	2
Construction of an in vitro bistable circuit from synthetic transcriptional switches	Jongmin Kim Kristin S. White Erik Winfree	Molecular Systems Biology	2006	Bistability Design principles Dynamical systems Transcription Ultrasensitivity	211	0
Mapping information flow in sensorimotor networks	Max Lungarella Olaf Sporns	PLoS Computational Biology	2006		211	0
The sniff as a unit of olfactory processing	Adam Kepecs Naoshige Uchida Zachary F. Mainen	Chemical Senses	2006	Active sensation Gamma rhythm Hippocampus Neural coding Theta rhythm Whisking	211	0
Synthetic in vitro transcriptional oscillators	Jongmin Kim Erik Winfree	Molecular Systems Biology	2011	cell free in vitro oscillation synthetic biology transcriptional circuits	207	0
Transitions from Nonliving to Living Matter	Steen Rasmussen Liaohai Chen David Deamer David C. Krakauer Norman H. Packard Mark A. Bedau Peter Stadler	Science	2004		207	5
Experimental test of the quantum Jarzynski equality with a trapped-ion system	Shuoming An Jing Ning Zhang Mark Um Dingshun Lv Yao Lu Junhua Zhang Zhang Qi Yin H. T. Quan Kihwan Kim	Nature Physics	2015		207	0
Role of mechanical factors in the morphology of the primate cerebral cortex	Claus C. Hilgetag Helen Barbas	PLoS Computational Biology	2006		206	0
Second law and Landauer principle far from equilibrium	C. Van Den Broeck Massimiliano Esposito	EPL	2011		205	3
Size at birth, postnatal growth and risk of obesity	K. K. Ong	Hormone Research	2006	Birth weight Catch-up Diabetes Obesity Weight gain	203	0
Imprecise Computations	Jane W.S. Liu Wei Kuan Shih Kwei Jay Lin Jen Yao Chung	Proceedings of the IEEE	1994		202	1
Second-order selection for evolvability in a large Escherichia coli population	Robert J. Woods Jeffrey E. Barrick Tim F. Cooper Utpala Shrestha Mark R. Kauth Richard E. Lenski	Science	2011		201	0
The emergence of human uniqueness: Characters underlying behavioral modernity	Kim Hill Michael Barton A. Magdalena Hurtado	Evolutionary Anthropology	2009		201	1
Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells	Wei R. Chen Jens Midtgaard Gordon M. Shepherd	Science	1997		200	0
Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium	Andrea Parmeggiani Frank Jülicher Armand Ajdari Jacques Prost	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	1999		199	0
The anatomical distance of functional connections predicts brain network topology in health and schizophrenia	Aaron F. Alexander-Bloch Petra E. Vértes Reva Stidd François Lalonde Liv Clasen Judith Rapoport Jay Giedd Edward T. Bullmore Nitin Gogtay	Cerebral Cortex	2013	brain network functional connectivity graph theory normal development schizophrenia	199	0
Fast-growth thermodynamic integration: Error and efficiency analysis	G. Hummer	Journal of Chemical Physics	2001		198	1
ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light	Haruhisa Okawa Alapakkam P. Sampath Simon B. Laughlin Gordon L. Fain	Current Biology	2008	SYSNEURO	197	0
Nonequilibrium fluctuations in a resistor	N. Garnier S. Ciliberto	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		197	0
Using information theory to search for co-evolving residues in proteins	L. C. Martin G. B. Gloor S. D. Dunn L. M. Wahl	Bioinformatics	2005		196	0
Self-regulating gene: An exact solution	J. E.M. Hornos D. Schultz G. C.P. Innocentini J. Wang A. M. Walczak J. N. Onuchic P. G. Wolynes	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		195	1
Motion out of noisy states	Rolf Landauer	Journal of Statistical Physics	1988	Relative stability circulating currents force fields state-dependent noise temperature gradients	195	0
Classical and quantum fluctuation theorems for heat exchange	Christopher Jarzynski Daniel K. Wójcik	Physical Review Letters	2004		194	11
Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap	D. M. Carberry J. C. Reid G. M. Wang E. M. Sevick Debra J. Searles Denis J. Evans	Physical Review Letters	2004		194	0
Argonaute proteins couple chromatin silencing to alternative splicing	Maya Ameyar-Zazoua Christophe Rachez Mouloud Souidi Philippe Robin Lauriane Fritsch Robert Young Nadya Morozova Romain Fenouil Nicolas Descostes Jean Christophe Andrau Jacques Mathieu Ali Hamiche Slimane Ait-Si-Ali Christian Muchardt Eric Batsché Annick Harel-Bellan	Nature Structural and Molecular Biology	2012		190	2
Combinatorial complexity in chromatin structure and function: Revisiting the histone code	Oliver J. Rando	Current Opinion in Genetics and Development	2012		190	0
Algorithmic randomness and physical entropy	W. H. Zurek	Physical Review A	1989		189	3
Fluctuation theorem for nonequilibrium reactions	Pierre Gaspard	Journal of Chemical Physics	2004		188	0
General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening	Xiaohong Cheng Xiangjun Liu Tao Bing Zehui Cao Dihua Shangguan	Biochemistry	2009		187	1
Thermophoretic depletion follows boltzmann distribution	Stefan Duhr Dieter Braun	Physical Review Letters	2006		187	0
Fast signals and slow marks: the dynamics of histone modifications	Teresa K. Barth Axel Imhof	Trends in Biochemical Sciences	2010		187	2
Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcripts	Marco Magistri Mohammad Ali Faghihi Georges St Laurent Claes Wahlestedt	Trends in Genetics	2012	Antisense RNA Chromatin Epigenetics NATs NcRNAs Transcriptome	186	0
Defect and error tolerance in the presence of massive numbers of defects	Melvin A. Breuer Sandeep K. Gupta T. M. Mak	IEEE Design and Test of Computers	2004		186	0
Cellular stoichiometry of the components of the chemotaxis signaling complex	Mingshan Li Gerald L. Hazelbauer	Journal of Bacteriology	2004		185	2
Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell	Nicolas Brunel Vincent Hakim Philippe Isope Jean Pierre Nadal Boris Barbour	Neuron	2004		185	0
Path integral formulation of general diffusion processes	Robert Graham	Zeitschrift für Physik B Condensed Matter and Quanta	1977		184	1
Optimal finite-time processes in stochastic thermodynamics	Tim Schmiedl Udo Seifert	Physical Review Letters	2007		183	1
One rule to grow them all: A general theory of neuronal branching and its practical application	Hermann Cuntz Friedrich Forstner Alexander Borst Michael Häusser	PLoS Computational Biology	2010		181	0
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity	Matthew D. Young Tracy A. Willson Matthew J. Wakefield Evelyn Trounson Douglas J. Hilton Marnie E. Blewitt Alicia Oshlack Ian J. Majewski	Nucleic Acids Research	2011		180	1
Conformational spread in a ring of proteins: A stochastic approach to allostery	T. A.J. Duke N. Le Novère D. Bray	Journal of Molecular Biology	2001	Allostery Flagellar motor Monte Carlo simulation Statistical mechanics	180	1
Number of parallel fiber synapses on an individual Purkinje cell in the cerebellum of the rat	R. M.A. Napper R. J. Harvey	Journal of Comparative Neurology	1988	dendritic spine electron microscopic molecular layer stereology	179	0
The complexity of facets (and some facets of complexity)	C. H. Papadimitriou M. Yannakakis	Journal of Computer and System Sciences	1984		178	0
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction	Eduardo D. Sontag	IEEE Transactions on Automatic Control	2001	Chemical networks Feedback Immunology Kinetic proofreading Stability System structure	177	0
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem	G. N. Bochkov Yu E. Kuzovlev	Physica A: Statistical Mechanics and its Applications	1981		177	2
TrxG and PcG proteins but not methylated histones remain associated with DNA through replication	Svetlana Petruk Yurii Sedkov Danika M. Johnston Jacob W. Hodgson Kathryn L. Black Sina K. Kovermann Samantha Beck Eli Canaani Hugh W. Brock Alexander Mazo	Cell	2012		176	4
Entropy production as correlation between system and reservoir	Massimiliano Esposito Katja Lindenberg Christian Van Den Broeck	New Journal of Physics	2010		176	6
Fly photoreceptors demonstrate energy-information trade-offs in neural coding	Jeremy E. Niven John C. Anderson Simon B. Laughlin	PLoS Biology	2007		176	0
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1	Subhash A. Khot Nisheeth K. Vishnoi	Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS	2005		174	2
A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb	Ana Raquel Pengelly Ömer Copur Herbert Jäckle Alf Herzig Jürg Müller	Science	2013		173	0
The mesoscopic dynamics of thermodynamic systems	D. Reguera J. M. Rubí J. M.G. Vilar	Journal of Physical Chemistry B	2005		173	1
Theoretical predictions of spatiotemporal receptive fields of fly LMCs, and experimental validation	J. H. van Hateren	Journal of Comparative Physiology A	1992	Blowfly LMC Natural images	172	0
Sparse complete sets for NP: Solution of a conjecture of Berman and Hartmanis	Stephen R. Mahaney	Journal of Computer and System Sciences	1982		171	1
Stochastic thermodynamics under coarse graining	Massimiliano Esposito	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		171	6
Measuring information integration	Giulio Tononi Olaf Sporns	BMC Neuroscience	2003		170	0
Aerobic glycolysis in the human brain is associated with development and neotenous gene expression	Manu S. Goyal Michael Hawrylycz Jeremy A. Miller Abraham Z. Snyder Marcus E. Raichle	Cell Metabolism	2014		170	0
Complex parameter landscape for a complex neuron model	Pablo Achard Erik De Schutter	PLoS Computational Biology	2006		169	2
Speeding up processing with approximation circuits	Shih Lien Lu	Computer	2004		168	0
Flaked stones and old bones: Biological and cultural evolution at the dawn of technology	Thomas Plummer	Yearbook of Physical Anthropology	2004	Africa Early Homo Oldowan Plio-Pleistocene	168	0
An experimental test of the Jarzynski equality in a mechanical experiment	F. Douarche S. Ciliberto A. Petrosyan I. Rabbiosi	Europhysics Letters	2005		168	1
Synaptic connectivity and neuronal morphology: Two sides of the same coin	Dmitri B. Chklovskii	Neuron	2004		167	0
Efficiency at maximum power of Feynman's ratchet as a heat engine	Z. C. Tu	Journal of Physics A: Mathematical and Theoretical	2008		167	0
Histone acetylation as an epigenetic determinant of long-term transcriptional competence	B. M. Turner	Cellular and Molecular Life Sciences	1998	Cell memory Chromatin Dosage compensation Drosophila Histone acetylation	166	0
Computation with finite stochastic chemical reaction networks	David Soloveichik Matthew Cook Erik Winfree Jehoshua Bruck	Natural Computing	2008	Molecular counts Probabilistic computation Stochastic chemical kinetics Turing-universal computation	166	5
Molecular combustion motors	Marcelo O. Magnasco	Physical Review Letters	1994		166	0
Generalized fluctuation-dissipation theorem for steady-state systems	J. Prost J. F. Joanny J. M.R. Parrondo	Physical Review Letters	2009		165	0
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling	Kevin J. Nowka Gary D. Carpenter Eric W. MacDonald Hung C. Ngo Bishop C. Brock Koji I. Ishii Tuyet Y. Nguyen Jeffrey L. Burns	IEEE Journal of Solid-State Circuits	2002	Dynamic frequency scaling Dynamic voltage scaling Low power microprocessors Phase-locked loops	165	0
Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats	Eugene Vovenko	Pflugers Archiv European Journal of Physiology	1999	Arterioles Brain cortex Capillaries Oxygen diffusion Oxygen tension PO2 gradient PO2 microelectrode Venules	165	0
The microvascular system of the striate and extrastriate visual cortex of the macaque	Bruno Weber Anna Lena Keller Johannes Reichold Nikos K. Logothetis	Cerebral Cortex	2008	Capillaries Cerebral blood flow Collagen Monkey Neuroimaging Primate	165	0
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation	Shawn K. Desai Justin P. Gallivan	Journal of the American Chemical Society	2004		164	0
A quantitative analysis of sniffing strategies in rats performing odor detection tasks	Steven L. Youngentob Maxwell M. Mozell Paul R. Sheehe David E. Hornung	Physiology and Behavior	1987	Odor detection task Pneumotachograph Rats Sniffing strategy	163	1
The folding cooperativity of a protein is controlled by its chain topology	Elizabeth A. Shank Ciro Cecconi Jesse W. Dill Susan Marqusee Carlos Bustamante	Nature	2010		163	0
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes	Robert Penchovsky Ronald R. Breaker	Nature Biotechnology	2005		161	0
Optimal Process Paths for Endoreversible Systems	K. H. Hoffmann J. Burzler A. Fischer M. Schaller S. Schubert	Journal of Non-Equilibrium Thermodynamics	2003		161	0
Rethinking mammalian brain evolution	Terrence W. Deacon	Integrative and Comparative Biology	1990		160	2
Noise stability of functions with low influences: Invariance and optimality	Elchanan Mossel Ryan O'donnell Krzysztof Oleszkiewicz	Annals of Mathematics	2010		159	0
Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes	W. W. Peterson	IRE Transactions on Information Theory	1960		159	6
Thermodynamics with continuous information flow	Jordan M. Horowitz Massimiliano Esposito	Physical Review X	2014	Interdisciplinary physics Statistical physics	159	6
High-precision test of Landauer's principle in a feedback trap	Yonggun Jun Momčilo Gavrilov John Bechhoefer	Physical Review Letters	2014		159	0
Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations	Hong Qian	Journal of Physical Chemistry B	2006		159	4
Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera	S. B. Laughlin M. Weckström	Journal of Comparative Physiology A	1993	Diversity Photoreceptor Potassium channels Response dynamics Visual ecology	157	0
Functional brain network efficiency predicts intelligence	Nicolas Langer Andreas Pedroni Jürgen Hänggi Daria Knoch Lutz Jäncke Lorena R.R. Gianotti	Human Brain Mapping	2012	EEG Intelligence Neuroscience Small-world network	157	1
Fluctuation theorem for currents and Schnakenberg network theory	David Andrieux Pierre Gaspard	Journal of Statistical Physics	2007	Affinities Entropy production Fluctuation theorem Nonequilibrium steady state Thermodynamic forces	156	1
One way functions and pseudorandom generators	Leonid A. Levin	Combinatorica	1987		155	0
Brownian motion: A paradigm of soft matter and biological physics	Erwin Frey Klaus Kroy	Annalen der Physik (Leipzig)	2005	Biological physics Brownian motion Fluctuations Stochastic processes	155	4
Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations	Mark A. Lever Karyn L. Rogers Karen G. Lloyd Jörg Overmann Bernhard Schink Rudolf K. Thauer Tori M. Hoehler Bo Barker Jørgensen	FEMS Microbiology Reviews	2015	Adaptation Energy limitation Laboratory Microbial life Starvation Subseafloor	154	0
Single-photon detection by rod cells of the retina	F. Rieke D. A. Baylor	Reviews of Modern Physics	1998		154	2
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli	Thomas S. Shimizu Yuhai Tu Howard C. Berg	Molecular Systems Biology	2010	Monod Wyman Changeux (MWC) model adaptation feedback fluorescence resonance energy transfer (FRET) frequency response	154	0
Thermodynamic bounds on efficiency for systems with broken time-reversal symmetry	Giuliano Benenti Keiji Saito Giulio Casati	Physical Review Letters	2011		152	0
Nonequilibrium work theorem for a system strongly coupled to a thermal environment	Chris Jarzynski	Journal of Statistical Mechanics: Theory and Experiment	2004	exact results fluctuations (theory)	152	0
Principles of control thermodynamics	P. Salamon J. D. Nulton G. Siragusa T. R. Andersen A. Limon	Energy	2001		151	0
Biomolecules under mechanical force	Sanjay Kumar Mai Suan Li	Physics Reports	2010	Computer simulations DNA Protein Single-molecule force spectroscopy	151	0
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium	Hong Qian Daniel A. Beard	Biophysical Chemistry	2005	Biological networks Cycle kinetics Mathematical modeling Metabolism Systems biology	150	5
A quantitative comparison of sRNA-based and protein-based gene regulation	Pankaj Mehta Sidhartha Goyal Ned S. Wingreen	Molecular Systems Biology	2008	Biophysics Genetic networks Signal processing Small RNA	150	0
Metabolic correlates of hominid brain evolution	William R. Leonard Marcia L. Robertson J. Josh Snodgrass Christopher W. Kuzawa	Comparative Biochemistry and Physiology - A Molecular and Integrative Physiology	2003	Adiposity Body composition Diet quality Encephalization Homo erectus Resting metabolism	150	0
Response correlation maps of neurons in the mammalian olfactory bulb	Minmin Luo Lawrence C. Katz	Neuron	2001		150	0
Neurobiologically realistic determinants of Self-Organized criticality in networks of spiking neurons	Mikail Rubinov Olaf Sporns Jean Philippe Thivierge Michael Breakspear	PLoS Computational Biology	2011		149	0
Observation of the Kibble-Zurek scaling law for defect formation in ion crystals	S. Ulm J. Roßnagel G. Jacob C. Degünther S. T. Dawkins U. G. Poschinger R. Nigmatullin A. Retzker M. B. Plenio F. Schmidt-Kaler K. Singer	Nature Communications	2013		149	0
Intraglomerular inhibition: Signaling mechanisms of an olfactory microcircuit	Gabe J. Murphy Daniel P. Darcy Jeffry S. Isaacson	Nature Neuroscience	2005		148	0
Mechanisms for the inheritance of chromatin states	Danesh Moazed	Cell	2011		147	0
Nutritional requirements and human evolution: A bioenergetics model	William R. Leonard Marcia L. Robertson	American Journal of Human Biology	1992		147	0
Physical origins of entropy production, free energy dissipation, and their mathematical representations	Hao Ge Hong Qian	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		146	5
Thermodynamics of a physical model implementing a Maxwell demon	Philipp Strasberg Gernot Schaller Tobias Brandes Massimiliano Esposito	Physical Review Letters	2013		146	3
Optical realization of relativistic non-Hermitian quantum mechanics	Stefano Longhi	Physical Review Letters	2010		146	0
The physics of forgetting: Landauer's erasure principle and information theory	M. B. Plenio V. Vitelli	Contemporary Physics	2001		145	10
Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states	R. K.P. Zia B. Schmittmann	Journal of Statistical Mechanics: Theory and Experiment	2007	Driven diffusive systems (theory) Stationary states (theory) Stochastic processes (theory)	145	0
Criticism of Feynman’s analysis of the ratchet as an engine	Juan M. R. Parrondo Pep Español	American Journal of Physics	1996		142	2
Costs of encephalization: the energy trade-off hypothesis tested on birds	Karin Isler Carel van Schaik	Journal of Human Evolution	2006	Brain size Digestion Expensive Tissue Hypothesis Gut size Locomotion Reproduction	141	1
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine	J. Astrup P. M. Sorensen H. R. Sorensen	Anesthesiology	1981		141	0
Characterization of the RNA content of chromatin	Tanmoy Mondal Markus Rasmussen Gaurav Kumar Pandey Anders Isaksson Chandrasekhar Kanduri	Genome Research	2010		139	0
Thermodynamic constraints for biochemical networks	Daniel A. Beard Eric Babson Edward Curtis Hong Qian	Journal of Theoretical Biology	2004	Biochemical network Matroid Metabolic flux analysis Nonequilibrium thermodynamics	139	4
Leveraging program equivalence for adaptive program repair: Models and first results	Westley Weimer Zachary P. Fry Stephanie Forrest	2013 28th IEEE/ACM International Conference on Automated Software Engineering, ASE 2013 - Proceedings	2013	Automated program repair mutation testing program equivalence search-based software engineering	138	0
Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics	Takahiro Sagawa Masahito Ueda	Physical Review Letters	2012		138	3
How Much the Eye Tells the Brain	Kristin Koch Judith McLean Ronen Segev Michael A. Freed Michael J. Berry Vijay Balasubramanian Peter Sterling	Current Biology	2006	SYSNEURO	138	0
Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking Neurons	Brett C. Carter Bruce P. Bean	Neuron	2009	molneuro signaling	138	0
Games against nature	Christos H. Papadimitriou	Journal of Computer and System Sciences	1985		137	6
Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon	J. V. Koski V. F. Maisi T. Sagawa J. P. Pekola	Physical Review Letters	2014		137	0
Neuroenergetics and the kinetic design of excitatory synapses	David Attwell Alasdair Gibb	Nature Reviews Neuroscience	2005		137	4
Computation on stochastic bit streams digital image processing case studies	Peng Li David J. Lilja Weikang Qian Kia Bazargan Marc D. Riedel	IEEE Transactions on Very Large Scale Integration (VLSI) Systems	2014	Digital image processing fault tolerance finite state machine (FSM) stochastic computing	136	3
Visual DSD: A design and analysis tool for DNA strand displacement systems	Matthew R. Lakin Simon Youssef Filippo Polo Stephen Emmott Andrew Phillips	Bioinformatics	2011		136	2
Information theory in molecular biology	Christoph Adami	Physics of Life Reviews	2004		135	1
On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution	Prajwal Raj Kafle Sanjib Sharma Geraint F. Lewis Joss Bland-Hawthorn	Astrophysical Journal	2014	Galaxy: fundamental parameters Galaxy: halo Galaxy: kinematics and dynamics dark matter stars: horizontal-branch	135	0
Energy aware computing through probabilistic switching: A study of limits	Krishna V. Palem	IEEE Transactions on Computers	2005	Energy-aware systems Low-power design Probabilistic computation	134	2
Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neurons	John P. McGann Nicolás Pírez Melanie A. Gainey Christina Muratore Adam S. Elias Matt Wachowiak	Neuron	2005		134	0
The magnificent compromise: cortical field evolution in mammals.	Leah Krubitzer	Neuron	2007		134	0
Quantum equivalent of the Carnot cycle	J. E. Geusic E. O. Schulz-DuBios H. E.D. Scovil	Physical Review	1967		134	2
Energy Aware Computing Through Probabilistic Switching: A Study of Limits	Krishna V. Palem	IEEE Transactions on Computers	2005	Energy-aware systems Low-power design Probabilistic computation	134	1
Parallel mechanisms of epigenetic reprogramming in the germline	Jamie A. Hackett Jan J. Zylicz M. Azim Surani	Trends in Genetics	2012		133	0
Dissipation and noise immunity in computation and communication	Rolf Landauer	Nature	1988		133	6
Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex	Yusuke Adachi Takahiro Osada Olaf Sporns Takamitsu Watanabe Teppei Matsui Kentaro Miyamoto Yasushi Miyashita	Cerebral Cortex	2012	anatomical connectivity computational model fMRI functional connectivity network	133	1
Nonequilibrium detailed fluctuation theorem for repeated discrete feedback	Jordan M. Horowitz Suriyanarayanan Vaikuntanathan	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		133	1
Quantum szilard engine	Sang Wook Kim Takahiro Sagawa Simone De Liberato Masahito Ueda	Physical Review Letters	2011		132	0
Theory of a Systematic Computational Error in Free Energy Differences	Daniel M. Zuckerman Thomas B. Woolf	Physical Review Letters	2002		132	0
Information-theoretic approach to the study of control systems	Hugo Touchette Seth Lloyd	Physica A: Statistical Mechanics and its Applications	2004	Chaotic systems Control Entropy Information Noise	132	10
Path-integral analysis of fluctuation theorems for general Langevin processes	Vladimir Y. Chernyak Michael Chertkov Christopher Jarzynski	Journal of Statistical Mechanics: Theory and Experiment	2006	Driven diffusive systems (theory) Exact results Rigorous results in statistical mechanics	132	13
Split decision: What happens to nucleosomes during DNA replication?	Anthony T. Annunziato	Journal of Biological Chemistry	2005		131	0
Reversible electronic logic using switches	R. C. Merkle	Nanotechnology	1993		131	0
High nucleosome occupancy is encoded at human regulatory sequences	Desiree Tillo Noam Kaplan Irene K. Moore Yvonne Fondufe-Mittendorf Andrea J. Gossett Yair Field Jason D. Lieb Jonathan Widom Eran Segal Timothy R. Hughes	PLoS ONE	2010		131	0
On the origin of modular variation	Hod Lipson Jordan B. Pollack Nam P. Suh	Evolution	2002	Adaptation Development Evolvability Modularity Pleiotropy	130	0
Work fluctuation theorems for harmonic oscillators	F. Douarche S. Joubaud N. B. Garnier A. Petrosyan S. Ciliberto	Physical Review Letters	2006		128	0
Influence of combinatorial histone modifications on antibody and effector protein recognition	Stephen M. Fuchs Krzysztof Krajewski Richard W. Baker Victoria L. Miller Brian D. Strahl	Current Biology	2011		126	0
Prevalence of epistasis in the evolution of influenza A surface proteins	Sergey Kryazhimskiy Jonathan Dushoff Georgii A. Bazykin Joshua B. Plotkin	PLoS Genetics	2011		126	0
Biorthogonal quantum mechanics	Dorje C. Brody	Journal of Physics A: Mathematical and Theoretical	2014	PT symmetry biorthogonal basis non-Hermitian Hamiltonian	126	9
Injected power fluctuations in Langevin equation	Jean Farago	Journal of Statistical Physics	2002	Fluctuation phenomena Noise and Brownian motion Random processes	126	0
Qualia: The geometry of integrated information	David Balduzzi Giulio Tononi	PLoS Computational Biology	2009		125	0
Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors	Johann Elbaz Michal Moshe Bella Shlyahovsky Itamar Willner	Chemistry - A European Journal	2009	Aptamers Biosensors DNAzymes Nanostructures Self-assembly	125	0
Symbiotic relationship between brain structure and dynamics	Mikail Rubinov Olaf Sporns Cees van Leeuwen Michael Breakspear	BMC Neuroscience	2009		125	0
Correcting errors beyond the Guruswami-Sudan radius in polynomial time	Farzad Parvaresh Alexander Vardy	Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS	2005		123	1
Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator	Maximilian Weitz Jongmin Kim Korbinian Kapsner Erik Winfree Elisa Franco Friedrich C. Simmel	Nature Chemistry	2014		123	1
New device for high-throughput viability screening of flow biofilms	Michael R. Benoit Carolyn G. Conant Cristian Ionescu-Zanetti Michael Schwartz A. Matin	Applied and Environmental Microbiology	2010		123	0
A simple population protocol for fast robust approximate majority	Dana Angluin James Aspnes David Eisenstat	Distributed Computing	2008	Byzantine faults Epidemics Majority Population protocols	122	2
Einstein relation generalized to nonequilibrium	V. Blickle T. Speck C. Lutz C. Bechinger Udo Seifert	Physical Review Letters	2007		122	1
Integral fluctuation theorem for the housekeeping heat	T. Speck Udo Seifert	Journal of Physics A: Mathematical and General	2005		122	2
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye	Simon B. Laughlin	Progress in Retinal and Eye Research	1994		121	2
Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild	Nancy L. Barrickman Meredith L. Bastian Karin Isler Carel P. van Schaik	Journal of Human Evolution	2008	Brain growth Brain size Comparative analysis Human evolution Primate evolution	121	3
Quantum criticality as a resource for quantum estimation	Paolo Zanardi Matteo G.A. Paris Lorenzo Campos Venuti	Physical Review A - Atomic, Molecular, and Optical Physics	2008		121	1
Fluidized granular medium as an instance of the fluctuation theorem	Klebert Feitosa Narayanan Menon	Physical Review Letters	2004		121	0
Fast computation by population protocols with a leader	Dana Angluin James Aspnes David Eisenstat	Distributed Computing	2008		120	0
Enzyme-free nucleic acid dynamical systems	Niranjan Srinivas James Parkin Georg Seelig Erik Winfree David Soloveichik	Science	2017		120	0
The effects of spatial constraints on the evolution of weighted complex networks	Alain Barrat Marc Barthélemy Alessandro Vespignani	Journal of Statistical Mechanics: Theory and Experiment	2005	Network dynamics Networks Random graphs	120	0
Fluctuation theorems for quantum master equations	Massimiliano Esposito Shaul Mukamel	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		120	2
Comparison of far-from-equilibrium work relations	Christopher Jarzynski	Comptes Rendus Physique	2007	Nonequilibrium systems Work relations	120	14
BPP and the polynomial hierarchy	Clemens Lautemann	Information Processing Letters	1983	Complexity polynomial hierarchy probabilistic Turing machines	119	8
Incremental growth tables: Supplementary to previously published charts	R. N. Baumgartner A. F. Roche J. H. Himes	American Journal of Clinical Nutrition	1986		119	1
Nonequilibrium energetics of a single F1-ATPase molecule	Shoichi Toyabe Tetsuaki Okamoto Takahiro Watanabe-Nakayama Hiroshi Taketani Seishi Kudo Eiro Muneyuki	Physical Review Letters	2010		119	0
Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information	Armelle Corpet Geneviève Almouzni	Trends in Cell Biology	2009		118	0
Heterochromatin formation involves changes in histone modifications over multiple cell generations	Yael Katan-Khaykovich Kevin Struhl	EMBO Journal	2005	Epigenetic transition Heterochromatin Histone methylation Sir proteins Transcriptional silencing	118	0
An informational process based on reversible universal cellular automata	Edward Fredkin	Physica D: Nonlinear Phenomena	1990		118	9
Using profile information to assist classic code optimizations	Pohua P. Chang Scott A. Mahlke Wen‐Mei W. Hwu	Software: Practice and Experience	1991	C Code optimization Compiler Profiler Profile‐based code optimization	117	0
The ManyBugs and IntroClass Benchmarks for Automated Repair of C Programs	Claire Le Goues Neal Holtschulte Edward K. Smith Yuriy Brun Premkumar Devanbu Stephanie Forrest Westley Weimer	IEEE Transactions on Software Engineering	2015	Automated program repair INTROCLASS MANYBUGS benchmark reproducibility subject defect	117	1
Information processing and the second law of thermodynamics: An inclusive, Hamiltonian approach	Sebastian Deffner Christopher Jarzynski	Physical Review X	2014		117	8
Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specific	C. F. Ekerot H. Jörntell	European Journal of Neuroscience	2001	Basket cells Cat Cerebellum Golgi cells LTD LTP Stellate cells	117	0
Reducibility among combinatorial problems	Richard M. Karp	50 Years of Integer Programming 1958-2008: From the Early Years to the State-of-the-Art	2010		116	4
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements	Anshul Kundaje Sofia Kyriazopoulou-Panagiotopoulou Max Libbrecht Cheryl L. Smith Debasish Raha Elliott E. Winters Steven M. Johnson Michael Snyder Serafim Batzoglou Arend Sidow	Genome Research	2012		116	0
Fluctuation theorem applied to F1-ATPase	Kumiko Hayashi Hiroshi Ueno Ryota Iino Hiroyuki Noji	Physical Review Letters	2010		116	0
Effective temperature of active matter	Davide Loi Stefano Mossa Leticia F. Cugliandolo	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		116	1
... further results