Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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Revision as of 00:14, March 28, 2018

A "fast growth" method of computing free energy differences, A (sub)graph isomorphism algorithm for matching large graphs, A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling, A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic, A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory, A Cost / Speed / Reliability Trade-off in Erasing a Bit, A DNA-fuelled molecular machine made of DNA, A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics, A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes, A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering, A Kilobit Special Number Field Sieve Factorization, A Map of the Interactome Network of the Metazoan C. elegans, A Nonequilibrium Extension of the Clausius Heat Theorem, A Note on Bennett’s Time-Space Tradeoff for Reversible Computation, A Parallel Repetition Theorem, A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes, A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs, A Sampling of the Yeast Proteome, A Simple Histone Code Opens Many Paths to Epigenetics, A Simple Model of Optimal Population Coding for Sensory Systems, A Survey of Techniques for Approximate Computing, A bound particle coupled to two thermostats, A complete problem for statistical zero knowledge, A complexity measure for selective matching of signals by the brain, A complexity theoretic approach to randomness, A cost/speed/reliability tradeoff to erasing, A fast and elitist multiobjective genetic algorithm: NSGA-II, A fast quantum mechanical algorithm for database search, A field-theoretic approach to non-equilibrium work identities, A fluctuation theorem for currents and non-linear response coefficients, A fluctuation theorem for non-equilibrium relaxational systems driven by external forces, A general framework for non-equilibrium phenomena: The master equation and its formal consequences, A general method for numerically simulating the stochastic time evolution of coupled chemical reactions, A general model for ontogenetic growth, A general model for the origin of allometric scaling laws in biology, A general model for the structure and allometry of plant vascular systems, A general purpose RNA-cleaving DNA enzyme, A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation, A generalized integral fluctuation theorem for general jump processes, A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks, A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb, A master equation description of local fluctuations, A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium, A mathematical theory of communication, A measure for brain complexity: relating functional segregation and integration in the nervous system., A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy, A model for transmission of the H3K27me3 epigenetic mark, A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli, A molecular information ratchet, A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares, A new notation for quantum mechanics, A new polynomial-time algorithm for linear programming, A note on monte carlo primality tests and algorithmic information theory, A note on the Jarzynski equality, A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries, A possible classification of nonequilibrium steady states, A quantitative analysis of sniffing strategies in rats performing odor detection tasks, A quantitative comparison of sRNA-based and protein-based gene regulation, A quantitative estimation of the global translational activity in logarithmically growing yeast cells, A reconfigurable stochastic architecture for highly reliable computing, A rigorous derivation of the chemical master equation, A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats., A simple coding procedure enhances a neuron’s information capacity, A simple population protocol for fast robust approximate majority, A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions, A simple theory of motor protein kinetics and energetics. II, A small world of neuronal synchrony, A spectral transform approach to stochastic circuits, A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic, A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms, A synthetic oscillatory network of transcriptional regulators, A systems perspective on early olfactory coding, A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension, A tension-based theory of morphogenesis and compact wiring in the central nervous system, A test of metabolically efficient coding in the retina, A theory of the learnable, A universal scaling law between gray matter and white matter of cerebral cortex., A yeast protein similar to bacterial two-component regulators., ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity, ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light, ATP-dependent mechanics of red blood cells, Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis, Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease, Accuracy of direct gradient sensing by cell-surface receptors, Active membrane fluctuations studied by micropipet aspiration, Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments, Addressing the wicked problem of quality in higher education: theoretical approaches and implications, Adipose tissue in human infancy and childhood: An evolutionary perspective, Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics, Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation, Aerobic glycolysis in the human brain is associated with development and neotenous gene expression, Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance, Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI, Age-related changes in modular organization of human brain functional networks, Algebraic methods in the theory of lower bounds for Boolean circuit complexity, Algorithmic Self-Assembly of DNA Sierpinski Triangles, Algorithmic randomness and physical entropy, Alternative splicing in the nervous system: An emerging source of diversity and regulation, Amorphous computing, Amplification and adaptation in regulatory and sensory systems, An Energy Budget for Signaling in the Grey Matter of the Brain, An Energy Budget for the Olfactory Glomerulus, An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation, An Introduction to Kolmogorov Complexity and Its Applications, An O(log n log log n) Space Algorithm for Undirected st-connectivity, An amplified sensitivity arising from covalent modification in biological systems., An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions, An analysis of selected computer interchange color spaces, An analytical solution to the kinetics of breakable filament assembly, An architecture for fault-tolerant computation with stochastic logic, An autonomous and reversible Maxwell's demon, An effect of DNA sequence on nucleosome occupancy and removal, An efficient 10GBASE-T ethernet LDPC decoder design with low error floors, An efficient graph theory based method to identify every minimal reaction set in a metabolic network, An estimate of the total DNA in the biosphere, An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions, An experimental test of the Jarzynski equality in a mechanical experiment, An information integration theory of consciousness, An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle, An information-theoretic equality implying the Jarzynski relation, An informational process based on reversible universal cellular automata, An intermediate level of abstraction for computational systems chemistry, An introduction to population protocols, An introduction to thermodynamics and statistical mechanics, An update on the nonequilibrium linear response, Analog Computation by DNA Strand Displacement Circuits, Analog Versus Digital: Extrapolating from Electronics to Neurobiology, Analog synthetic biology, Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits, Analyzing friction forces with the Jarzynski equality, Analyzing molecular reaction networks: From pathways to chemical organizations, Another proof of Gell-Mann and Low's theorem, Application of Boolean Algebra to Switching Circuit Design and to Error Detection, Application of importance sampling to the computation of large deviations in nonequilibrium processes, Application-level correctness and its impact on fault tolerance, ApproxMA: Approximate Memory Access for Dynamic Precision Scaling, Approximate computing: An emerging paradigm for energy-efficient design, Approximate counting, uniform generation and rapidly mixing Markov chains, Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network, Are Recursion Theoretic Arguments Useful in Complexity Theory?, Argonaute proteins couple chromatin silencing to alternative splicing, Article for analog vector algebra computation, Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements, Astrocytes Couple Synaptic Activity to Glucose Utilization in the Brain., Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution, Asymmetrically modified nucleosomes, Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic, Asymptotics of work distributions in nonequilibrium systems, Asynchronous computation with molecular reactions, Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study, Average Case Complete Problems, Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation, BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study, BPP and the polynomial hierarchy, BRAIN WORK AND BRAIN IMAGING, Bacterial chemoreceptors: high-performance signaling in networked arrays, Bacterial computing with engineered populations, Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states, Basal Metabolic Rate in Man, Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise, Bayesian integration in sensorimotor learning, Best-effort computing: Re-thinking parallel software and hardware, Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome, Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements, Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?, Bidirectional single-electron counting and the fluctuation theorem, Binary Multiplication with PN Sequences, Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer., Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1), Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors, Biological solutions to transport network design, Biomolecules under mechanical force, Biorthogonal quantum mechanics, Body Composition and Energy Needs during Growth, Body size and metabolic rate., Bona fide stochastic resonance: A view point from stochastic energetics, Boundary layers in stochastic thermodynamics, Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines, Brain Graphs: Graphical Models of the Human Brain Connectome, Brain anatomical network and intelligence, Brain and body oxygen requirements of Gnathonemus petersii, a fish with an exceptionally large brain, Brain growth, life history, and cognition in primate and human evolution, Breaking DES Using a Molecular Computer, Broadband Criticality of Human Brain Network Synchronization, Broken symmetries and the masses of gauge bosons, Brownian motion: A paradigm of soft matter and biological physics, Brownian motors: Noisy transport far from equilibrium, Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium, Building programmable jigsaw puzzles with RNA, CNS energy metabolism as related to function, CREW PRAMs and Decision Trees, CURRENT OPINION IN STRUCTURAL BIOLOGY, Calcium signalling and regulation in olfactory neurons, Calcium, the two-faced messenger of olfactory transduction and adaptation, Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality, Calculating potentials of mean force from steered molecular dynamics simulations., Calculating source line level energy information for Android applications, Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host, Cell Type-Specific Tuning of Hippocampal Interneuron Firing during Gamma Oscillations In Vivo, Cellular energy utilization and molecular origin of standard metabolic rate in mammals, Cellular stoichiometry of the components of the chemotaxis signaling complex, Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing, Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation, Cerebellar LTD and Pattern Recognition by Purkinje Cells, ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity, Challenges for complexity measures: A perspective from social dynamics and collective social computation, Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights, Channel noise in neurons, Characterization of Minimum Error Linear Coding with Sensory and Neural Noise, Characterization of the RNA content of chromatin, Characterization of the anterior cingulate's role in the at-risk mental state using graph theory, Characterizing plastic depinning dynamics with the fluctuation theorem, Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life., Chemical Reaction Networks for Computing Polynomials, Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms, Chemical implementation of finite-state machines, Chemical implementation of neural networks and Turing machines, Chemical kinetics is turing universal, Chemical reaction network theory for in-silico biologists, Chemical sensing by nonequilibrium cooperative receptors, Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions, Chemotaxis in Escherichia coli analysed by three-dimensional tracking, Childhood and the evolution of the human life course: An Introduction, Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription, Chromatin and epigenetic regulation of pre-mrna processing, Chromatin computation, Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels, Chromatin organization marks exon-intron structure, Chromatin proteins: Key responders to stress, Chromatin structure and the inheritance of epigenetic information, Circulation and Energy Metabolism of the Brain., Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise, Classical and quantum fluctuation theorems for heat exchange, Classical and quantum limitations on energy consumption in computation, Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality, Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty, Closed-loop control strategy with improved current for a flashing ratchet, Coding Efficiency and the Metabolic Cost of Sensory and Neural Information, Coding of Odors by a Receptor Repertoire, Cognitive Effort Drives Workspace Configuration of Human Brain Functional Networks, Cognitive fitness of cost-efficient brain functional networks, Collective dynamics of 'small-world' networks, Colloquium: The physics of Maxwell's demon and information, Combinatorial Problems and Exercises, Combinatorial complexity in chromatin structure and function: Revisiting the histone code, Combinatorial complexity of pathway analysis in metabolic networks., Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums, Combinatorial readout of dual histone modifications by paired chromatin-associated modules, Combined analog and action potential coding in hippocampal mossy fibers, Comment on "Failure of the work-Hamiltonian connection for free-energy calculations" by Jose M. G. Vilar and J. Miguel Rubi, Communication in neuronal networks, Communication lower bounds using directional derivatives, Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories?, Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid, Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process, Comparison of far-from-equilibrium work relations, Comparison of work fluctuation relations, Compartmental organization of the olfactory bulb glomerulus, Compendium of the Foundations of Classical Statistical Physics, Compiler optimization on instruction scheduling for low power, Complex Extension of Quantum Mechanics, Complex and detailed balancing of chemical reaction networks revisited, Complex brain networks: graph theoretical analysis of structural and functional systems, Complex network measures of brain connectivity: Uses and interpretations, Complex parameter landscape for a complex neuron model, Complexity, entropy and the physics of information, Component-placement optimization in the brain, Computation in networks of passively mobile finite-state sensors, Computation on stochastic bit streams digital image processing case studies, Computation with finite stochastic chemical reaction networks, Computational Complexity of Probabilistic Turing Machines, Computational Complexity: A Modern Approach, Computational complexity: a modern approach, Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes, Computational design of nucleic acid feedback control circuits, Computational limits to binary genes., Computational selection of nucleic acid biosensors via a slip structure model, Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury, Computer simulation of Feynman's ratchet and pawl system, Computers and Intractability: a guide to NP-completeness, Computing the optimal protocol for finite-time processes in stochastic thermodynamics, Computing with Noisy Information, Conformational spread in a ring of proteins: A stochastic approach to allostery, Connectivity optimization and the positioning of cortical areas, Connectivity-driven white matter scaling and folding in primate cerebral cortex, Consciousness as integrated information: A provisional manifesto, Consensus paper: The cerebellum's role in movement and cognition, Conservative logic, Constrained maximal power in small engines, Construction and optimization of a quantum analog of the Carnot cycle, Construction of an in vitro bistable circuit from synthetic transcriptional switches, Continuous time controllers using digital programmable devices, Control of DNA strand displacement kinetics using toehold exchange, Convergence in the olfactory system: quantitative aspects of odour sensitivity, Cooling classical particles with a microcanonical szilard engine, Cooperative binding of effectors by an allosteric ribozyme., Cooperative binding of two acetylation marks on a histone tail by a single bromodomain, Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors, Cooperativity, sensitivity, and noise in biochemical signaling, Coordination languages and their significance, Correcting errors beyond the Guruswami-Sudan radius in polynomial time, Correlated evolution of nearby residues in drosophilid proteins, Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver., Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis, Cortical GABA Interneurons in Neurovascular Coupling: Relays for Subcortical Vasoactive Pathways, Cortical Hubs Revealed by Intrinsic Functional Connectivity: Mapping, Assessment of Stability, and Relation to Alzheimer's Disease, Cosmological experiments in superfluid helium?, Costs of encephalization: the energy trade-off hypothesis tested on birds, Could information theory provide an ecological theory of sensory processing?, Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport, Covalent modifications of histones during mitosis and meiosis, Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis., Covariation of residues in the homeodomain sequence family, Criticism of Feynman’s analysis of the ratchet as an engine, Crowding Effects on Diffusion in Solutions and Cells, Cryptographic Limitations on Learning Boolean Formulae and Finite Automata, Cube v4: From performance report explorer to performance analysis tool, Curie's principle, Current trends in finite-time thermodynamics, Current, maximum power and optimized efficiency of a Brownian heat engine, Cybernetics : Control and Communication in the Animal and the Machine --2nd. ed, DNA COMPUTING, DNA as a universal substrate for chemical kinetics (Extended Abstract), Darwinian demons, evolutionary complexity, and information maximization, Data Center Efficiency Assessment, Decoherence, einselection, and the quantum origins of the classical, Defect and error tolerance in the presence of massive numbers of defects, Defining Network Topologies that Can Achieve Biochemical Adaptation, Defining genes: A computational framework, Delayed stochastic decoding of LDPC codes, Demons, Engines and the Second Law, Dendrosomatic voltage and charge transfer in rat neocortical pyramidal cells, Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism, Dental and skeletal growth in early fossil hominins, Dental evidence for ontogenetic differences between modern humans and Neanderthals, Deoxyribozymes that recode sequence information, Dependence of the fluctuation-Dissipation temperature on the choice of observable, Derandomizing polynomial identity tests means proving circuit lower bounds, Derivation of quantum master equation with counting fields by monitoring a probe, Design and analysis of synthetic carbon fixation pathways., Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements, Design of a Neuronal Array, Design of a trichromatic cone array, Design principles of a bacterial signalling network, Designing logic circuits for probabilistic computation in the presence of noise, Designing optimal discrete-feedback thermodynamic engines, Detecting Activity in Olfactory Bulb Glomeruli with Astrocyte Recording, Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex, Determining cortical landscapes, Deterministic Function Computation with Chemical Reaction Network, Deterministic function computation with chemical reaction networks, Development of Gap Junctions in Hippocampal Astrocytes: Evidence That Whole Cell Electrophysiological Phenotype Is an Intrinsic Property of the Individual Cell, Development of large-scale functional brain networks in children, Dietary constraints on encephalization in primates, Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis, Differential Landauer's principle, Diffusion Tensor Tractography Reveals Abnormal Topological Organization in Structural Cortical Networks in Alzheimer's Disease, Diffusion of transcription factors can drastically enhance the noise in gene expression, Digital and analog gene circuits for biotechnology, Digital genetics: Unravelling the genetic basis of evolution, Digitalized Signatures and Public-Key Functions as Intractable as Factorization, Directing reprogramming to pluripotency by transcription factors, Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome, Discriminatory proofreading regimes in nonequilibrium systems, Disjointness is hard in the multiparty number-on-the-forehead model, Disrupted Modularity and Local Connectivity of Brain Functional Networks in Childhood-Onset Schizophrenia, Disrupted axonal fiber connectivity in schizophrenia, Disrupted small-world networks in schizophrenia, Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers, Dissipation Bound for Thermodynamic Control, Dissipation and lag in irreversible processes, Dissipation and noise immunity in computation and communication, Dissipation-error tradeoff in proofreading, Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome, Distinctive features of dinoflagellate chromatin. Absence of nucleosomes in a primitive species Prorocentrum micans E., Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase, Distributed hierarchical processing in the primate cerebral cortex, Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil, Distribution of entropy production for a colloidal particle in a nonequilibrium steady state, Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats, Distribution of work in isothermal nonequilibrium processes, Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator, Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?, Drivers of bacterial maintenance and minimal energy requirements, Dropbox Quick Start, Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3, Dynamic DNA nanotechnology using strand-displacement reactions, Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes, Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation, Dynamic mapping at the laminar level of odor-elicited responses in rat olfactory bulb by functional MRI., Dynamic reconfiguration of human brain networks during learning, Dynamical consequences of lesions in cortical networks, Dynamical ensembles in nonequilibrium statistical mechanics, Dynamical fluctuations for periodically driven diffusions, Dynamical reconnection and stability constraints on cortical network architecture, Dynamics and memory of heterochromatin in living cells, Dynamics of a tracer granular particle as a nonequilibrium Markov process, Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations., Dynamics of cooperativity in chemical sensing among cell-surface receptors, Dynamics of inherently bounded histone modification domains, Dynamics of market correlations: Taxonomy and portfolio analysis, Dynamo: Amazon’s Highly Available Key-value Store, ERSA: Error resilient system architecture for probabilistic applications, Earliest evidence of modern human life history in North African early Homo sapiens., Early metazoan life: divergence, environment and ecology, Earth mover's distance as a metric for image retrieval, Easiness Assumptions and Hardness Tests: Trading Time for Zero Error, Ecology and Energetics of Encephalization in Hominid Evolution, Ecology, the Ascendent Perspective, Effect of feedback on the fidelity of information transmission of time-varying signals, Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors, Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension, Effective temperature of active matter, Effective temperature of red-blood-cell membrane fluctuations, Effective temperatures in driven systems: Static versus time-dependent relations, Effective temperatures of a driven, strongly anisotropic Brownian system, Effective temperatures of a heated Brownian particle, Effects of reservoir squeezing on quantum systems and work extraction, Efficiencies of a molecular motor: a generic hybrid model applied to the F1-ATPase, Efficiency and cost of economical brain functional networks, Efficiency and fluctuation in tight-coupling model of molecular motor, Efficiency at Maximal Power of Minimal Nonlinear Irreversible Heat Engines, Efficiency at maximum power of Feynman's ratchet as a heat engine, Efficiency at maximum power of thermally coupled heat engines, Efficiency at maximum power output of linear irreversible Carnot-like heat engines, Efficiency at maximum power: An analytically solvable model for stochastic heat engines, Efficiency of Brownian motors in terms of entropy production rate, Efficiency of a Carnot engine at maximum power output, Efficiency of autonomous soft nanomachines at maximum power, Efficiency of cellular information processing, Efficiency of free energy transduction in autonomous systems, Efficiency of functional brain networks and intellectual performance., Efficiency of information transmission by retinal ganglion cells, Efficiency of molecular machines with continuous phase space, Efficiency of molecular motors at maximum power, Efficient behavior of small-world networks, Efficient checking of computations, Efficient extraction of free energy profiles from nonequilibrium experiments, Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids, Efficient physical embedding of topologically complex information processing networks in brains and computer circuits, Efficient randomized pattern-matching algorithms, Efficient turing-universal computation with DNA polymers, Einstein relation generalized to nonequilibrium, Electromagnetic gauge-freedom and work, Electrophysiological and Morphological Amygdaloid Neurons in vitro Properties of Rat Basolateral, Electrophysiological classes of cat primary visual cortical neurons in vivo as revealed by quantitative analyses., Electrophysiological properties of rat lateral parabrachial neurons in vitro, Electrophysiology of interneurons in the glomerular layer of the rat olfactory bulb., Elements of Information Theory, Elements of Information Theory 2nd Edition, Emergent complex neural dynamics, Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes, End of Moore's law: Thermal (noise) death of integration in micro and nano electronics, Energetic basis of brain activity: Implications for neuroimaging, Energetic demand of multiple dependents and the evolution of slow human growth, Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions, Energetics and the Evolution of the Genus Homo, Energetics and the evolution of human brain size, Energetics of functional activation in neural tissues, Energy Aware Computing Through Probabilistic Switching: A Study of Limits, Energy Balance for Analysis of Complex Metabolic Networks, Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation, Energy Efficient Neural Codes, Energy allocation between brain and body during ontogenetic development, Energy as a constraint on the coding and processing of sensory information, Energy aware computing through probabilistic switching: A study of limits, Energy balance for analysis of complex metabolic networks., Energy conversion by molecular motors coupled to nucleotide hydrolysis, Energy dissipation and noise correlations in biochemical sensing, Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems, Energy dissipation in an adaptive molecular circuit, Energy efficient neural codes., Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics, Energy flows in low-entropy complex systems, Energy limitation as a selective pressure on the evolution of sensory systems, Energy metabolism of rabbit retina as related to function: high cost of Na+ transport., Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations, Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium, Energy use constrains brain information processing, Energy-Efficient Information Transfer by Visual Pathway Synapses, Energy-Efficient Sensing with the Low Power, Energy Aware Processing (LEAP) Architecture, Energy-efficient action potentials in hippocampal mossy fibers., Energy-efficient neuronal computation via quantal synaptic failures., Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina, Engineering complex riboswitch regulation by dual genetic selection, Engineering precision RNA molecular switches, Enhancing server availability and security through failure-oblivious computing, Enstrophy dissipation in two-dimensional turbulence, Entropic tension in crowded membranes, Entropy Production in Nonequilibrium Systems at Stationary States, Entropy Production of Brownian Macromolecules with Inertia, Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States, Entropy fluctuations in shell models of turbulence, Entropy involved in fidelity of DNA replication, Entropy production along a stochastic trajectory and an integral fluctuation theorem, Entropy production and fluctuation relations for a KPZ interface, Entropy production and fluctuation theorem along a stochastic limit cycle, Entropy production and fluctuation theorems under feedback control: The molecular refrigerator model revisited, Entropy production and the arrow of time, Entropy production as correlation between system and reservoir... further results