Template:Reference Material Query

• Hal Abelson, Jacob Beal, Gerald Jay Sussman Amorphous computing Computational Complexity: Theory, Techniques, and Applications 9781461418009, 147-160 (2012)
• Nixon M. Abraham, Hartwig Spors, Alan Carleton, Troy W. Margrie, Thomas Kuner, Andreas T. Schaefer Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice Neuron 44, 865-876 (2004)
• D. Abreu, Udo Seifert Extracting work from a single heat bath through feedback EPL 94,  (2011)
• David Abreu, Udo Seifert Thermodynamics of genuine nonequilibrium states under feedback control Physical Review Letters 108,  (2012)
• Pablo Achard, Erik De Schutter Complex parameter landscape for a complex neuron model PLoS Computational Biology 2, 0794-0804 (2006)
• Sophie Achard, Ed Bullmore Efficiency and cost of economical brain functional networks PLoS Computational Biology 3, 0174-0183 (2007)
• Yusuke Adachi, Takahiro Osada, Olaf Sporns, Takamitsu Watanabe, Teppei Matsui, Kentaro Miyamoto, Yasushi Miyashita Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex Cerebral Cortex 22, 1586-1592 (2012)
• Kenjiro Adachi, Hans R. Schöler Directing reprogramming to pluripotency by transcription factors Current Opinion in Genetics and Development 22, 416-422 (2012)
• Christoph Adami The Use of Information Theory in Evolutionary Biology Annals of the New York Academy of Sciences 1256, 49-65 (2012)
• Christoph Adami Information theory in molecular biology Physics of Life Reviews 1, 3-22 (2004)
• Christoph Adami Digital genetics: Unravelling the genetic basis of evolution Nature Reviews Genetics 7, 109-118 (2006)
• Noam Agmon, Attila Szabo Theory of reversible diffusion-influenced reactions The Journal of Chemical Physics 92, 5270-5284 (1990)
• Y. Aharonov, S. Massar, S. Popescu Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation Physical Review A - Atomic, Molecular, and Optical Physics 66, 11 (2002)
• Yong Yeol Ahn, Hawoong Jeong, Beom Jun Kim Wiring cost in the organization of a biological neuronal network Physica A: Statistical Mechanics and its Applications 367, 531-537 (2006)
• Sebastian E. Ahnert, Andrei Zinovyev, Thomas M.A. Fink How much non-coding DNA do eukaryotes require? Journal of Theoretical Biology 252, 587-592 (2008)
• Leslie C. Aiello, Peter Wheeler The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution Current Anthropology 36, 199-221 (1995)
• Armin Alaghi, John P. Hayes STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 34, 1770-1783 (2015)
• Armin Alaghi, John P. Hayes Exploiting correlation in stochastic circuit design 2013 IEEE 31st International Conference on Computer Design, ICCD 2013 , 39-46 (2013)
• Armin Alaghi, John P. Hayes A spectral transform approach to stochastic circuits Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors , 315-321 (2012)
• Tameem Albash, Daniel A. Lidar, Milad Marvian, Paolo Zanardi Fluctuation theorems for quantum processes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 88,  (2013)
• Mic hael Alekhnovich, Alexander A. Razborov Lower bounds for polynomial calculus: Non-binomial case Annual Symposium on Foundations of Computer Science - Proceedings , 190-199 (2001)
• A. S. Jayes, R. Mc N. Alexander Optimum walking techniques for idealized animals Journal of Zoology 186, 61-81 (1978)
• Aaron F. Alexander-Bloch, Petra E. Vértes, Reva Stidd, François Lalonde, Liv Clasen, Judith Rapoport, Jay Giedd, Edward T. Bullmore, Nitin Gogtay The anatomical distance of functional connections predicts brain network topology in health and schizophrenia Cerebral Cortex 23, 127-138 (2013)
• R. Alicki The quantum open system as a model of the heat engine Journal of Physics A: General Physics 12,  (1979)
• A. E. Allahverdyan, Th M. Nieuwenhuizen A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium Physica A: Statistical Mechanics and its Applications 305, 542-552 (2002)
• A. E. Allahverdyan, S. G. Babajanyan Electromagnetic gauge-freedom and work Journal of Physics A: Mathematical and Theoretical 49,  (2016)
• Armen E. Allahverdyan, Dominik Janzing, Guenter Mahler Thermodynamic efficiency of information and heat flow Journal of Statistical Mechanics: Theory and Experiment 2009,  (2009)
• Henrik Alle, Jörg R.P. Geiger Combined analog and action potential coding in hippocampal mossy fibers Science 311, 1290-1293 (2006)
• Rosalind J. Allen, Chantal Valeriani, Pieter Rein ten Wolde Forward flux sampling for rare event simulations Journal of Physics Condensed Matter 21,  (2009)
• U. Alon, M. G. Surette, N. Barkai, S. Leibler Robustness in bacterial chemotaxis Nature 397, 168-171 (1999)
• Jeffrey Alstott, Michael Breakspear, Patric Hagmann, Leila Cammoun, Olaf Sporns Modeling the impact of lesions in the human brain PLoS Computational Biology 5,  (2009)
• René Alt, Jean Luc Lamotte, Svetoslav Markov On the solution to numerical problems using stochastic arithmetic 12th GAMM - IMACS International Symposium on Scientific Computing, Computer Arithmetic and Validated Numerics, SCAN 2006, Conference Post-Proceedings , 6-13 (2006)
• Bernhard Altaner, Jürgen Vollmer Fluctuation-preserving coarse graining for biochemical systems Physical Review Letters 108,  (2012)
• B. Altaner, S. Grosskinsky, S. Herminghaus, L. Katthän, M. Timme, J. Vollmer Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• Bernhard Altaner, Artur Wachtel, Jürgen Vollmer Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 92,  (2015)
• Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny Transient fluctuation relations for time-dependent particle transport Physical Review B - Condensed Matter and Materials Physics 82,  (2010)
• Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny Fluctuation relations and rare realizations of transport observables Physical Review Letters 105,  (2010)
• Carlos Alvarez, Jesús Corbal, Mateo Valero Fuzzy Memoization for Floating-Point Multimedia Applications IEEE Transactions on Computers 54, 922-927 (2005)
• Christian P. Amann, Tim Schmiedl, Udo Seifert Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? Journal of Chemical Physics 132,  (2010)
• Adelbert Ames CNS energy metabolism as related to function Brain Research Reviews 34, 42-68 (2000)
• Maya Ameyar-Zazoua, Christophe Rachez, Mouloud Souidi, Philippe Robin, Lauriane Fritsch, Robert Young, Nadya Morozova, Romain Fenouil, Nicolas Descostes, Jean Christophe Andrau, Jacques Mathieu, Ali Hamiche, Slimane Ait-Si-Ali, Christian Muchardt, Eric Batsché, Annick Harel-Bellan Argonaute proteins couple chromatin silencing to alternative splicing Nature Structural and Molecular Biology 19, 998-1005 (2012)
• Shuoming An, Jing Ning Zhang, Mark Um, Dingshun Lv, Yao Lu, Junhua Zhang, Zhang Qi Yin, H. T. Quan, Kihwan Kim Experimental test of the quantum Jarzynski equality with a trapped-ion system Nature Physics 11, 193-199 (2015)
• Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler An intermediate level of abstraction for computational systems chemistry IEEE/ACM Transactions on Computational Biology and Bioinformatics 16, 510-523 (2019)
• Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete Journal of Systems Chemistry 3,  (2012)
• John C. Anderson, Simon B. Laughlin Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system Vision Research 40, 13-31 (2000)
• Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski Nucleosomes are well positioned in exons and carry characteristic histone modifications Genome Research 19, 1732-1741 (2009)
• Benjamin Andrae, Jonas Cremer, Tobias Reichenbach, Erwin Frey Entropy production of cyclic population dynamics Physical Review Letters 104,  (2010)
• Bjarne Andresen Current trends in finite-time thermodynamics Angewandte Chemie - International Edition 50, 2690-2704 (2011)
• David Andrieux, Pierre Gaspard Fluctuation theorem for currents and Schnakenberg network theory Journal of Statistical Physics 127, 107-131 (2007)
• David Andrieux, Pierre Gaspard Fluctuation theorem for transport in mesoscopic systems Journal of Statistical Mechanics: Theory and Experiment ,  (2006)
• David Andrieux, Pierre Gaspard Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74,  (2006)
• David Andrieux, Pierre Gaspard Network and thermodynamic conditions for a single macroscopic current fluctuation theorem Comptes Rendus Physique 8, 579-590 (2007)
• David Andrieux, Pierre Gaspard A fluctuation theorem for currents and non-linear response coefficients Journal of Statistical Mechanics: Theory and Experiment ,  (2007)
• Dana Angluin, James Aspnes, David Eisenstat A simple population protocol for fast robust approximate majority Distributed Computing 21, 87-102 (2008)
• Dana Angluin, James Aspnes, Zoë Diamadi, Michael J. Fischer, René Peralta Computation in networks of passively mobile finite-state sensors Distributed Computing 18, 235-253 (2006)
• Dana Angluin, James Aspnes, David Eisenstat Fast computation by population protocols with a leader Distributed Computing 21, 183-199 (2008)
• Anthony T. Annunziato Split decision: What happens to nucleosomes during DNA replication? Journal of Biological Chemistry 280, 12065-12068 (2005)
• M. Antoniotti, C. Piazza, A. Policriti, M. Simeoni, B. Mishra Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice Theoretical Computer Science 325, 45-67 (2004)
• Y. Apertet, H. Ouerdane, C. Goupil, Ph Lecoeur Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• Gerardo Aquino, Robert G. Endres Increased accuracy of ligand sensing by receptor diffusion on cell surface Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Gerardo Aquino, Luke Tweedy, Doris Heinrich, Robert G. Endres Memory improves precision of cell sensing in fluctuating environments Scientific Reports 4,  (2014)
• Andrea Arcuri, Lionel Briand A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering Software Testing Verification and Reliability 24, 219-250 (2014)
• J. Ricardo Arias-Gonzalez Entropy involved in fidelity of DNA replication PLoS ONE 7,  (2012)
• Camille Aron, Giulio Biroli, Leticia F. Cugliandolo Symmetries of generating functionals of Langevin processes with colored multiplicative noise Journal of Statistical Mechanics: Theory and Experiment 2010,  (2010)
• Mesfin Asfaw, Mulugeta Bekele Current, maximum power and optimized efficiency of a Brownian heat engine European Physical Journal B 38, 457-461 (2004)
• Mesfin Asfaw Modeling an efficient Brownian heat engine European Physical Journal B 65, 109-116 (2008)
• James Aspnes, Eric Ruppert An introduction to population protocols Middleware for Network Eccentric and Mobile Applications , 97-120 (2009)
• J. Astrup, P. M. Sorensen, H. R. Sorensen Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine Anesthesiology 55, 263-268 (1981)
• William C. Athas, J. Svensson, Jeffrey G. Koller, Nestoras Tzartzanis, Ying Chin Chou Low-Power Digital Systems Based on Adiabatic-Switching Principles IEEE Transactions on Very Large Scale Integration (VLSI) Systems 2, 398-407 (1994)
• Joseph J. Atick Could information theory provide an ecological theory of sensory processing? Network: Computation in Neural Systems 22, 4-44 (2011)
• Joseph J. Atick, A. Norman Redlich What Does the Retina Know about Natural Scenes? Neural Computation 4, 196-210 (1992)
• Fred Attneave Some informational aspects of visual perception Psychological Review 61, 183-193 (1954)
• David Attwell, Costantino Iadecola The neural basis of functional brain imaging signals Trends in Neurosciences 25, 621-625 (2002)
• David Attwell, Alasdair Gibb Neuroenergetics and the kinetic design of excitatory synapses Nature Reviews Neuroscience 6, 841-849 (2005)
• Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi Optimal protocols and optimal transport in stochastic thermodynamics Physical Review Letters 106,  (2011)
• Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi Boundary layers in stochastic thermodynamics Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• Erik Aurell, Krzysztof Gawȩdzki, Carlos Mejía-Monasterio, Roya Mohayaee, Paolo Muratore-Ginanneschi Refined Second Law of Thermodynamics for Fast Random Processes Journal of Statistical Physics 147, 487-505 (2012)
• Bruno B. Averbeck, Moonsang Seo The statistical neuroanatomy of frontal networks in the macaque PLoS Computational Biology 4,  (2008)
• N. Ay, N. Bertschinger, R. Der, F. Güttler, E. Olbrich Predictive information and explorative behavior of autonomous robots European Physical Journal B 63, 329-339 (2008)
• Bernard J. Baars The conscious access hypothesis: Origins and recent evidence Trends in Cognitive Sciences 6, 47-52 (2002)
• John C. Baez, Brendan Fong Quantum techniques for studying equilibrium in reaction networks Journal of Complex Networks 3, 22-34 (2015)
• Marco Baiesi, Tim Jacobs, Christian Maes, Nikos S. Skantzos Fluctuation symmetries for work and heat Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74,  (2006)
• M. Baiesi, C. Maes An update on the nonequilibrium linear response New Journal of Physics 15,  (2013)
• Marco Baiesi, Christian Maes Enstrophy dissipation in two-dimensional turbulence Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 72,  (2005)
• Josh E. Baker Free energy transduction in a chemical motor model Journal of Theoretical Biology 228, 467-476 (2004)
• Vijay Balasubramanian, Michael J. Berry A test of metabolically efficient coding in the retina Network: Computation in Neural Systems 13, 531-552 (2002)
• Vijay Balasubramanian, Peter Sterling Receptive fields and functional architecture in the retina Journal of Physiology 587, 2753-2767 (2009)
• Vijay Balasubramanian Heterogeneity and Efficiency in the Brain Proceedings of the IEEE 103, 1346-1358 (2015)
• David Balduzzi, Giulio Tononi Integrated information in discrete dynamical systems: Motivation and theoretical framework PLoS Computational Biology 4,  (2008)
• David Balduzzi, Giulio Tononi Qualia: The geometry of integrated information PLoS Computational Biology 5,  (2009)
• Andrew J. Bannister, Philip Zegerman, Janet F. Partridge, Eric A. Miska, Jean O. Thomas, Robin C. Allshire, Tony Kouzarides Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain Nature 410, 120-124 (2001)
• A. C. Barato, R. Chetrite On the symmetry of current probability distributions in jump processes Journal of Physics A: Mathematical and Theoretical 45,  (2012)
• A. C. Barato, R. Chetrite, H. Hinrichsen, D. Mukamel Entropy production and fluctuation relations for a KPZ interface Journal of Statistical Mechanics: Theory and Experiment 2010,  (2010)
• Andre Cardoso Barato, Raphaël Chetrite, Haye Hinrichsen, David Mukamel A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes Journal of Statistical Physics 146, 294-313 (2012)
• Andre C. Barato, Udo Seifert Stochastic thermodynamics with information reservoirs Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 90,  (2014)
• Andre C. Barato, David Hartich, Udo Seifert Efficiency of cellular information processing New Journal of Physics 16,  (2014)
• A. C. Barato, H. Hinrichsen Entropy production of a bound nonequilibrium interface Journal of Physics A: Mathematical and Theoretical 45,  (2012)
• A. C. Barato, Udo Seifert Unifying three perspectives on information processing in stochastic thermodynamics Physical Review Letters 112,  (2014)
• Andre C. Barato, David Hartich, Udo Seifert Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables Journal of Statistical Physics 153, 460-478 (2013)
• A. C. Barato, D. Hartich, Udo Seifert Information-theoretic versus thermodynamic entropy production in autonomous sensory networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 87,  (2013)
• Andre C. Barato, Udo Seifert Thermodynamic Uncertainty Relation for Biomolecular Processes Physical Review Letters 114,  (2015)
• Udo Seifert, A. C. Barato An autonomous and reversible Maxwell's demon EPL 101,  (2013)
• N. Barkai, S. Leibler Robustness in simple biochemical networks Nature 387, 913-917 (1997)
• Alain Barrat, Marc Barthélemy, Alessandro Vespignani The effects of spatial constraints on the evolution of weighted complex networks Journal of Statistical Mechanics: Theory and Experiment , 49-68 (2005)
• Jeffrey E. Barrick, Dong Su Yu, Sung Ho Yoon, Haeyoung Jeong, Tae Kwang Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim Genome evolution and adaptation in a long-term experiment with Escherichia coli Nature 461, 1243-1247 (2009)
• Nancy L. Barrickman, Meredith L. Bastian, Karin Isler, Carel P. van Schaik Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild Journal of Human Evolution 54, 568-590 (2008)
• Caswell Barry, Robin Hayman, Neil Burgess, Kathryn J. Jeffery Experience-dependent rescaling of entorhinal grids Nature Neuroscience 10, 682-684 (2007)
• Teresa K. Barth, Axel Imhof Fast signals and slow marks: the dynamics of histone modifications Trends in Biochemical Sciences 35, 618-626 (2010)
• Danielle S. Bassett, Daniel L. Greenfield, Andreas Meyer-Lindenberg, Daniel R. Weinberger, Simon W. Moore, Edward T. Bullmore Efficient physical embedding of topologically complex information processing networks in brains and computer circuits PLoS Computational Biology 6,  (2010)
• Danielle S. Bassett, Edward T. Bullmore Human brain networks in health and disease Current Opinion in Neurology 22, 340-347 (2009)
• Danielle Smith Bassett, Ed Bullmore Small-world brain networks Neuroscientist 12, 512-523 (2006)
• Isa Baud, Dianne Scott, Karin Pfeffer, John Sydenstricker-Neto, Eric Denis Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru Habitat International 46, 225-233 (2015)
• Peter Bauer, Alan Thorpe, Gilbert Brunet The quiet revolution of numerical weather prediction Nature 525, 47-55 (2015)
• Amy L. Bauernfeind, Sarah K. Barks, Tetyana Duka, Lawrence I. Grossman, Patrick R. Hof, Chet C. Sherwood Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance Brain Structure and Function 219, 1149-1167 (2014)
• A. Baule, R. M.L. Evans Invariant quantities in shear flow Physical Review Letters 101,  (2008)
• A. Baule, R. M.L. Evans Nonequilibrium statistical mechanics of shear flow: Invariant quantities and current relations Journal of Statistical Mechanics: Theory and Experiment 2010,  (2010)
• A. Baule, E. G.D. Cohen Steady-state work fluctuations of a dragged particle under external and thermal noise Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80,  (2009)
• R. N. Baumgartner, A. F. Roche, J. H. Himes Incremental growth tables: Supplementary to previously published charts American Journal of Clinical Nutrition 43, 711-722 (1986)
• Travis S. Bayer, Christina D. Smolke Programmable ligand-controlled riboregulators of eukaryotic gene expression Nature Biotechnology 23, 337-343 (2005)
• Daniel A. Beard, Eric Babson, Edward Curtis, Hong Qian Thermodynamic constraints for biochemical networks Journal of Theoretical Biology 228, 327-333 (2004)
• Nils B. Becker, Pieter Rein ten Wolde Rare switching events in non-stationary systems Journal of Chemical Physics 136,  (2012)
• Nils B. Becker, Andrew Mugler, Pieter Rein ten Wolde Optimal Prediction by Cellular Signaling Networks Physical Review Letters 115,  (2015)
• Anthony J. Bell, Terrence J. Sejnowski The 'independent components' of natural scenes are edge filters Vision Research 37, 3327-3338 (1997)
• M. Belushkin, R. Livi, G. Foffi Hydrodynamics and the fluctuation theorem Physical Review Letters 106,  (2011)
• Daniel Ben-Avraham, Sven Dorosz, Michel Pleimling Realm of validity of the Crooks relation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 83,  (2011)
• Eyal Ben-Isaac, Yongkeun Park, Gabriel Popescu, Frank L.H. Brown, Nir S. Gov, Yair Shokef Effective temperature of red-blood-cell membrane fluctuations Physical Review Letters 106,  (2011)
• I. Bena, C. Van Den Broeck, R. Kawai Jarzynski equality for the Jepsen gas Europhysics Letters 71, 879-885 (2005)
• Carl M. Bender, Dorje C. Brody, Hugh F. Jones Complex Extension of Quantum Mechanics Physical Review Letters 89,  (2002)
• Carl M. Bender, Stefan Boettcher Real spectra in non-hermitian hamiltonians having PT symmetry Physical Review Letters 80, 5243-5246 (1998)
• Yaakov Benenson, Tamar Paz-Elizur, Rivka Adar, Ehud Keinan, Zvi Llvneh, Ehud Shapiro Programmable and autonomous computing machine made of biomolecules Nature 414, 430-434 (2001)
• Giuliano Benenti, Keiji Saito, Giulio Casati Thermodynamic bounds on efficiency for systems with broken time-reversal symmetry Physical Review Letters 106,  (2011)
• Paul Benioff The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machines Journal of Statistical Physics 22, 563-591 (1980)
• Ronald Benjamin, Ryoichi Kawai Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 77,  (2008)
• Charles H. Bennett The thermodynamics of computation-a review International Journal of Theoretical Physics 21, 905-940 (1982)
• Charles H. Bennett Dissipation-error tradeoff in proofreading BioSystems 11, 85-91 (1979)
• Charles H. Bennett Notes on Landauer's principle, reversible computation, and Maxwell's Demon Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics 34, 501-510 (2003)
• Michael R. Benoit, Carolyn G. Conant, Cristian Ionescu-Zanetti, Michael Schwartz, A. Matin New device for high-throughput viability screening of flow biofilms Applied and Environmental Microbiology 76, 4136-4142 (2010)
• Alexander M. Berezhkovskii, Sergey M. Bezrukov Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport Physical Review Letters 100,  (2008)
• Alexander M. Berezhkovskii, Attila Szabo Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors Journal of Chemical Physics 139,  (2013)
• Howard C. Berg, Douglas A. Brown Chemotaxis in Escherichia coli analysed by three-dimensional tracking Nature 239, 500-504 (1972)
• H. C. Berg, E. M. Purcell Physics of chemoreception Biophysical Journal 20, 193-219 (1977)
• Florian Berger, Tim Schmiedl, Udo Seifert Optimal potentials for temperature ratchets Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Ronen Berkovich, Joseph Klafter, Michael Urbakh Analyzing friction forces with the Jarzynski equality Journal of Physics Condensed Matter 20,  (2008)
• Alice Bernamonti, Federico Galli, Robert C. Myers, Jonathan Oppenheim Holographic Second Laws of Black Hole Thermodynamics 2018, 70 (2018)
• M. V. Berry Optical polarization evolution near a non-Hermitian degeneracy Journal of Optics 13,  (2011)
• Ludovic Berthier Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids Physical Review Letters 98,  (2007)
• Eric Bertin, Kirsten Martens, Olivier Dauchot, Michel Droz Intensive thermodynamic parameters in nonequilibrium systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 75,  (2007)
• William Bialek, Sima Setayeshgar Cooperativity, sensitivity, and noise in biochemical signaling Physical Review Letters 100,  (2008)
• Brendan A. Bicknell, Peter Dayan, Geoffrey J. Goodhill The limits of chemosensation vary across dimensions Nature Communications 6,  (2015)
• D. M. Bier, R. D. Leake, M. W. Haymond, K. J. Arnold, L. D. Gruenke, M. A. Sperling, D. M. Kipnis Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose Diabetes 26, 1016-1023 (1977)
• Martin Bier, Francisco J. Cao Szilard-machine-like features in a processive motor protein Acta Physica Polonica B 43, 889-908 (2012)
• Martin Billeter, Yan Qiu Qian, Gottfried Otting, Martin Müller, Walter Gehring, Kurt Wüthrich Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex Journal of Molecular Biology 234, 1084-1097 (1993)
• Donna G. Blackmond An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions Angewandte Chemie - International Edition 48, 386-390 (2009)
• V. Blickle, T. Speck, C. Lutz, C. Bechinger, Udo Seifert Einstein relation generalized to nonequilibrium Physical Review Letters 98,  (2007)
• Valentin Blickle, Clemens Bechinger Realization of a micrometre-sized stochastic heat engine Nature Physics 8, 143-146 (2012)
• V. Blickle, T. Speck, L. Helden, C. Bechinger, Udo Seifert Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential Physical Review Letters 96,  (2006)
• R. A. Blythe Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states Physical Review Letters 100,  (2008)
• G. N. Bochkov, Yu E. Kuzovlev Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes Physica A: Statistical Mechanics and its Applications 106, 480-520 (1981)
• G. N. Bochkov, Yu E. Kuzovlev Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem Physica A: Statistical Mechanics and its Applications 106, 443-479 (1981)
• G N Bochkov, Yu. E Kuzolev General theory of thermal fluctuations in nonlinear systems Sov. Phys. JETP 45, 125-130 (1977)
• J. Boeckh, K. E. Kaissling, D. Schneider Insect olfactory receptors. Cold Spring Harbor symposia on quantitative biology 30, 263-280 (1965)
• Barry Bogin, Jared Bragg, Christopher Kuzawa Humans are not cooperative breeders but practice biocultural reproduction Annals of Human Biology 41, 368-380 (2014)
• Eliran Boksenbojm, Bram Wynants The entropy and efficiency of a molecular motor model Journal of Physics A: Mathematical and Theoretical 42,  (2009)
• Ludwig Boltzmann Ueber die mechanischen Analogien des zweiten Hauptsatzes der Thermodynamik Journal fur die Reine und Angewandte Mathematik 1887, 201-212 (1887)
• M. Bonaldi, L. Conti, P. De Gregorio, L. Rondoni, G. Vedovato, A. Vinante, M. Bignotto, M. Cerdonio, P. Falferi, N. Liguori, S. Longo, R. Mezzena, A. Ortolan, G. A. Prodi, F. Salemi, L. Taffarello, S. Vitale, J. P. Zendri Nonequilibrium steady-state fluctuations in actively cooled resonators Physical Review Letters 103,  (2009)
• Piero P. Bonissone Soft computing: the convergence of emerging reasoning technologies Soft Computing - A Fusion of Foundations, Methodologies and Applications 1, 6-18 (1997)
• M. Born, R. Oppenheimer Zur Quantentheorie der Molekeln Annalen der Physik 389, 457-484 (1927)
• Ravinderjit S. Braich, Nickolas Chelyapov, Cliff Johnson, Paul W.K. Rothemund, Leonard Adleman Solution of a 20-variable 3-SAT problem on a DNA computer Science 296, 499-502 (2002)
• Oliver Braun, Andreas Hanke, Udo Seifert Probing molecular free energy landscapes by periodic loading Physical Review Letters 93,  (2004)
• Hans C. Breiter, Nancy L. Etcoff, Paul J. Whalen, William A. Kennedy, Scott L. Rauch, Randy L. Buckner, Monica M. Strauss, Steven E. Hyman, Bruce R. Rosen Response and habituation of the human amygdala during visual processing of facial expression Neuron 17, 875-887 (1996)
• Hans Bremer, Patrick P Dennis Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate Escherichia coli and Salmonella: cellular and molecular biology 2, 1527-1542 (1987)
• Melvin A. Breuer, Sandeep K. Gupta, T. M. Mak Defect and error tolerance in the presence of massive numbers of defects IEEE Design and Test of Computers 21, 216-227 (2004)
• Dorje C. Brody Biorthogonal quantum mechanics Journal of Physics A: Mathematical and Theoretical 47,  (2014)
• Seth J. Brown, Peter Stoilov, Yi Xing Chromatin and epigenetic regulation of pre-mrna processing Human Molecular Genetics 21,  (2012)
• Bradley D. Brown, Howard C. Card Stochastic neural computation I: Computational elements IEEE Transactions on Computers 50, 891-905 (2001)
• Wesley R. Browne, Ben L. Feringa Making molecular machines work Nature Nanotechnology 1, 25-35 (2006)
• Nicolas Brunel, Vincent Hakim, Philippe Isope, Jean Pierre Nadal, Boris Barbour Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell Neuron 43, 745-757 (2004)
• Matteo Brunelli, Stefano Olivares, Matteo G.A. Paris Qubit thermometry for micromechanical resonators Physical Review A - Atomic, Molecular, and Optical Physics 84,  (2011)
• Matteo Brunelli, Stefano Olivares, Mauro Paternostro, Matteo G.A. Paris Qubit-assisted thermometry of a quantum harmonic oscillator Physical Review A - Atomic, Molecular, and Optical Physics 86,  (2012)
• Barbara Bryant Chromatin computation PLoS ONE 7,  (2012)
• Randy L. Buckner, Jessica R. Andrews-Hanna, Daniel L. Schacter The brain's default network: Anatomy, function, and relevance to disease Annals of the New York Academy of Sciences 1124, 1-38 (2008)
• Enric Bufill, Jordi Agustí, Rafael Blesa Human neoteny revisited: The case of synaptic plasticity American Journal of Human Biology 23, 729-739 (2011)
• Harry Buhrman, John Tromp, Paul Vitányi Time and space bounds for reversible simulation Journal of Physics A: Mathematical and General 34, 6821-6830 (2001)
• Eliot C. Bush, John M. Allman The scaling of white matter to gray matter in cerebellum and neocortex Brain, Behavior and Evolution 61, 1-5 (2003)
• C. Bustamante, D. Keller, G. Oster The physics of molecular motors Accounts of Chemical Research 34, 412-420 (2001)
• Nancy F. Butte, William W. Wong, Theresa A. Wilson, Anne L. Adolph, Maurice R. Puyau, Issa F. Zakeri Revision of Dietary Reference Intakes for energy in preschool-age children American Journal of Clinical Nutrition 100, 161-167 (2014)
• György Buzsáki, Kai Kaila, Marcus Raichle Inhibition and Brain Work Neuron 56, 771-783 (2007)
• Antoine Bérut, Artak Arakelyan, Artyom Petrosyan, Sergio Ciliberto, Raoul Dillenschneider, Eric Lutz Experimental verification of Landauer's principle linking information and thermodynamics Nature 483, 187-189 (2012)
• O. Cadot, A. Boudaoud, C. Touzé Statistics of power injection in a plate set into chaotic vibration European Physical Journal B 66, 399-407 (2008)
• Benjamin Callahan, Richard A. Neher, Doris Bachtrog, Peter Andolfatto, Boris I. Shraiman Correlated evolution of nearby residues in drosophilid proteins PLoS Genetics 7,  (2011)
• Herbert B. Callen, H. L. Scott Thermodynamics and an Introduction to Thermostatistics, 2nd ed. American Journal of Physics 66, 164-167 (1998)
• I. Callens, W. De Roeck, T. Jacobs, C. Maes, K. Netočný Quantum entropy production as a measure of irreversibility Physica D: Nonlinear Phenomena 187, 383-391 (2004)
• Steve Campbell, Mohammad Mehboudi, Gabriele De Chiara, Mauro Paternostro Global and local thermometry schemes in coupled quantum systems New Journal of Physics 19,  (2017)
• Michele Campisi, Peter Hänggi, Peter Talkner Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics) Reviews of Modern Physics 83, 771-791 (2011)
• Michele Campisi Quantum fluctuation relations for ensembles of wave functions New Journal of Physics 15,  (2013)
• Michele Campisi, Peter Talkner, Peter Hänggi Fluctuation theorem for arbitrary open quantum systems Physical Review Letters 102,  (2009)
• Emmanuel J. Candes, Terence Tao Near-optimal signal recovery from random projections: Universal encoding strategies? IEEE Transactions on Information Theory 52, 5406-5425 (2006)
• F. J. Cao, M. Feito, H. Touchette Information and flux in a feedback controlled Brownian ratchet Physica A: Statistical Mechanics and its Applications 388, 113-119 (2009)
• Francisco J. Cao, Manuel Feito Open problems on information and feedback controlled systems Entropy 14, 834-847 (2012)
• F. J. Cao, M. Feito Thermodynamics of feedback controlled systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Francisco J. Cao, Luis Dinis, Juan M.R. Parrondo Feedback control in a collective flashing ratchet Physical Review Letters 93,  (2004)
• D. M. Carberry, J. C. Reid, G. M. Wang, E. M. Sevick, Debra J. Searles, Denis J. Evans Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap Physical Review Letters 92,  (2004)
• Luca Cardelli Morphisms of reaction networks that couple structure to function BMC Systems Biology 8,  (2014)
• Luca Cardelli, Attila Csikász-Nagy The cell cycle switch computes approximate majority Scientific Reports 2,  (2012)
• Luca Cardelli Strand algebras for DNA computing Natural Computing 10, 407-428 (2011)
• Brett C. Carter, Bruce P. Bean Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking Neurons Neuron 64, 898-909 (2009)
• Sarah A. Cepeda-Humerez, Georg Rieckh, Gašper Tkačik Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation Physical Review Letters 115,  (2015)
• Paul Chadderton, Troy W. Margie, Michael Häusser Integration of quanta in cerebellar granule cells during sensory processing Nature 428, 856-860 (2004)
• M. Chaichian, A. P. Demichev Path integrals with generalized Grassmann variables Physics Letters A 207, 23-30 (1995)
• Eric J. Chaisson Energy flows in low-entropy complex systems Entropy 17, 8007-8018 (2015)
• Gregory J. Chaitin, Jacob T. Schwartz A note on monte carlo primality tests and algorithmic information theory Communications on Pure and Applied Mathematics 31, 521-527 (1978)
• Anirikh Chakrabarti, Ljubisa Miskovic, Keng Cher Soh, Vassily Hatzimanikatis Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints Biotechnology Journal 8, 1043-1057 (2013)
• D. Chakraborty, M. V. Gnann, D. Rings, J. Glaser, F. Otto, F. Cichos, K. Kroy Generalised Einstein relation for hot Brownian motion EPL 96,  (2011)
• A. F. Chalmers Curie's principle British Journal for the Philosophy of Science 21, 133-148 (1970)
• Catie Chang, Gary H. Glover Time-frequency dynamics of resting-state brain connectivity measured with fMRI NeuroImage 50, 81-98 (2010)
• L. Chang, M. Karin Mammalian MAP kinase signalling cascades Nature 410, 37-40 (2001)
• Pohua P. Chang, Scott A. Mahlke, Wen‐Mei W. Hwu Using profile information to assist classic code optimizations Software: Practice and Experience 21, 1301-1321 (1991)
• Mark A. Changizi Principles underlying mammalian neocortical scaling Biological Cybernetics 84, 207-215 (2001)
• T. Ivo Chao, Peter Kasa, Joachim R. Wolff Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil Journal of Comparative Neurology 388, 191-210 (1997)
• Eric L. Charnov, David Berrigan Why do female primates have such long lifespans and so few babies? or Life in the slow lane Evolutionary Anthropology: Issues, News, and Reviews 1, 191-194 (1993)
• C. Chatelain A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension Journal of Statistical Mechanics: Theory and Experiment ,  (2007)
• Christophe Chatelain On universality in ageing ferromagnets Journal of Statistical Mechanics: Theory and Experiment ,  (2004)
• Debarati Chatterjee, Binny J. Cherayil Single-molecule thermodynamics: The heat distribution function of a charged particle in a static magnetic field Journal of Statistical Mechanics: Theory and Experiment 2011,  (2011)
• Debarati Chatterjee, Binny J. Cherayil Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Ho Lin Chen, David Doty, David Soloveichik Deterministic Function Computation with Chemical Reaction Network Natural Computing 13, 517-534 (2014)
• Lingen Chen, Zemin Ding, Fengrui Sun Optimum performance analysis of Feynman's engine as cold and hot ratchets Journal of Non-Equilibrium Thermodynamics 36, 155-177 (2011)
• Zhang J. Chen, Yong He, Pedro Rosa-Neto, Gaolang Gong, Alan C. Evans Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI NeuroImage 56, 235-245 (2011)
• Zhang J. Chen, Yong He, Pedro Rosa-Neto, Jurgen Germann, Alan C. Evans Revealing modular architecture of human brain structural networks by using cortical thickness from MRI Cerebral Cortex 18, 2374-2381 (2008)
• Lingen Chen, Chih Wu, Fengrui Sun Finite time thermodynamic optimization or entropy generation minimization of energy systems Journal of Non-Equilibrium Thermodynamics 24, 327-359 (1999)
• Wei R. Chen, Jens Midtgaard, Gordon M. Shepherd Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells Science 278, 463-467 (1997)
• Yuan Jyue Chen, Neil Dalchau, Niranjan Srinivas, Andrew Phillips, Luca Cardelli, David Soloveichik, Georg Seelig Programmable chemical controllers made from DNA Nature Nanotechnology 8, 755-762 (2013)
• Ho Lin Chen, David Doty, David Soloveichik Deterministic function computation with chemical reaction networks Natural Computing 13, 517-534 (2014)
• Xiaohong Cheng, Xiangjun Liu, Tao Bing, Zehui Cao, Dihua Shangguan General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening Biochemistry 48, 7817-7823 (2009)
• Eric Cheng, Shahrzad Mirkhani, Lukasz G. Szafaryn, Chen Yong Cher, Hyungmin Cho, Kevin Skadron, Mircea R. Stan, Klas Lilja, Jacob A. Abraham, Pradip Bose, Subhasish Mitra Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience) IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 37, 1839-1852 (2018)
• Vladimir Y. Chernyak, Michael Chertkov, Christopher Jarzynski Path-integral analysis of fluctuation theorems for general Langevin processes Journal of Statistical Mechanics: Theory and Experiment ,  (2006)
• Vladimir Y. Chernyak, Michael Chertkov, Sergey V. Malinin, Razvan Teodorescu Non-equilibrium thermodynamics and topology of currents Journal of Statistical Physics 137, 109-147 (2009)
• Raphaël Chetrite, Shamik Gupta Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale Journal of Statistical Physics 143, 543-584 (2011)
• Raphaël Chetrite, Krzysztof Gawędzki Eulerian and lagrangian pictures of non-equilibrium diffusions Journal of Statistical Physics 137, 890-916 (2009)
• Dante R. Chialvo Emergent complex neural dynamics Nature Physics 6, 744-750 (2010)
• Dmitri B. Chklovskii Synaptic connectivity and neuronal morphology: Two sides of the same coin Neuron 43, 609-617 (2004)
• Dmitri B. Chklovskii Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) Vision Research 40, 1765-1773 (2000)
• Hyungmin Cho, Larkhoon Leem, Subhasish Mitra ERSA: Error resilient system architecture for probabilistic applications IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 31, 546-558 (2012)
• Song Ho Chong, Michio Otsuki, Hisao Hayakawa Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 81,  (2010)
• T. Chou, K. Mallick, R. K.P. Zia Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport Reports on Progress in Physics 74,  (2011)
• Dominique Chu, David J. Barnes The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate Scientific Reports 6,  (2016)
• Dominique Chu Limited by sensing - A minimal stochastic model of the lag-phase during diauxic growth Journal of Theoretical Biology 414, 137-146 (2017)
• Dominique F. Chu In silico evolution of diauxic growth BMC Evolutionary Biology 15,  (2015)
• Petr Chvosta, Mario Einax, Viktor Holubec, Artem Ryabov, Philipp Maass Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions Journal of Statistical Mechanics: Theory and Experiment 2010,  (2010)
• Arkadiusz Chworos, Isil Severcan, Alexey Y. Koyfman, Patrick Weinkam, Emin Oroudjev, Helen G. Hansma, Luc Jaeger Building programmable jigsaw puzzles with RNA Science 306, 2068-2072 (2004)
• S. Ciliberto, N. Garnier, S. Hernandez, C. Lacpatia, J. F. Pinton, G. Ruiz Chavarria Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows Physica A: Statistical Mechanics and its Applications 340, 240-250 (2004)
• Neil D. Clarke Covariation of residues in the homeodomain sequence family Protein Science 4, 2269-2278 (1995)
• R. Clausius Ueber die bewegende Kraft der Wärme und die Gesetze, welche sich daraus für die Wärmelehre selbst ableiten lassen Annalen der Physik 155, 368-397 (1850)
• David M. Cohen, Jingna Wei, E. O'Brian Smith, Xiaolian Gao, Michael J. Quast, Louis Sokoloff A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy Magnetic Resonance in Medicine 48, 1063-1067 (2002)
• D. Collin, F. Ritort, C. Jarzynski, S. B. Smith, I. Tinoco, C. Bustamante Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies Nature 437, 231-234 (2005)
• Anne Condon, Bonnie Kirkpatrick, Ján Maňuch Reachability bounds for chemical reaction networks and strand displacement systems Natural Computing 13, 499-516 (2014)
• Anne Condon, Alan Hu, Ján Maňuch, Chris Thachuk Less haste, less waste: On recycling and its limits in strand displacement systems Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6937 LNCS, 84-99 (2011)
• Federico Corberi, Eugenio Lippiello, Marco Zannetti Fluctuation dissipation relations far from equilibrium Journal of Statistical Mechanics: Theory and Experiment ,  (2007)
• Luigi P. Cordella, Pasquale Foggia, Carlo Sansone, Mario Vento A (sub)graph isomorphism algorithm for matching large graphs IEEE Transactions on Pattern Analysis and Machine Intelligence 26, 1367-1372 (2004)
• R. M. Cormack, D. L. Hartl, A. G. Clark Principles of Population Genetics. Biometrics 46, 546 (1990)
• Armelle Corpet, Geneviève Almouzni Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information Trends in Cell Biology 19, 29-41 (2009)
• Thomas M. Cover, Joy A. Thomas Elements of Information Theory Elements of Information Theory , 1-748 (2005)
• A. Crisanti, F. Ritort Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence Journal of Physics A: Mathematical and General 36,  (2003)
• Gavin Crooks Path-ensemble averages in systems driven far from equilibrium Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 61, 2361-2366 (2000)
• Gavin Crooks Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 60, 2721-2726 (1999)
• David A. Sivak, Gavin Crooks Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics Journal of Statistical Mechanics: Theory and Experiment 2011,  (2011)
• Leticia F. Cugliandolo, David S. Dean, Jorge Kurchan Fluctuation-dissipation theorems and entropy production in relaxational systems Physical Review Letters 79, 2168-2171 (1997)
• Leticia F. Cugliandolo, Jorge Kurchan, Luca Peliti Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 55, 3898-3914 (1997)
• Hermann Cuntz, Friedrich Forstner, Alexander Borst, Michael Häusser One rule to grow them all: A general theory of neuronal branching and its practical application PLoS Computational Biology 6,  (2010)
• F. L. Curzon, B. Ahlborn Efficiency of a Carnot engine at maximum power output American Journal of Physics 43, 22-24 (1975)
• Debasis Dan, A. M. Jayannavar Bona fide stochastic resonance: A view point from stochastic energetics Physica A: Statistical Mechanics and its Applications 345, 404-410 (2005)
• Ramiz Daniel, Jacob R. Rubens, Rahul Sarpeshkar, Timothy K. Lu Synthetic analog computation in living cells Nature 497, 619-623 (2013)
• Mark A. Danielson, Joseph J. Falke, Hans Peter Biemann, Daniel E. Koshland Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study Biochemistry 33, 6100-6109 (1994)
• Paul C.W. Davies, Sara Imari Walker The hidden simplicity of biology Reports on Progress in Physics 79,  (2016)
• Paul C.W. Davies, Elisabeth Rieper, Jack A. Tuszynski Self-organization and entropy reduction in a living cell BioSystems 111, 1-10 (2013)
• Alexander Davydov Inequalities for Non-equilibrium Fluctuations of Work Journal of Statistical Physics 142, 394-402 (2011)
• W. H. De Ronde, F. Tostevin, P. R. Ten Wolde Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 86,  (2012)
• Wiet Hendrik De Ronde, Filipe Tostevin, Pieter Rein ten Wolde Effect of feedback on the fidelity of information transmission of time-varying signals Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Dirk De Vos, Floor Frederiks, Marit Terweij, Tibor Van Welsem, Kitty F. Verzijlbergen, Ekaterina Iachina, Erik L. De Graaf, A. F. Maarten Altelaar, Gideon Oudgenoeg, Albert J.R. Heck, Jeroen Krijgsveld, Barbara M. Bakker, Fred Van Leeuwen Progressive methylation of ageing histones by Dot1 functions as a timer EMBO Reports 12, 956-962 (2011)
• Terrence W. Deacon Rethinking mammalian brain evolution Integrative and Comparative Biology 30, 629-705 (1990)
• Christopher Dean, Meave G. Leakey, Donald Reid, Friedemann Schrenk, Gary T. Schwartz, Christopher Stringer, Alan Walker Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins Nature 414, 628-631 (2001)
• M. Christopher Dean, Victoria S. Lucas Dental and skeletal growth in early fossil hominins Annals of Human Biology 36, 545-561 (2009)
• Kalyanmoy Deb, Amrit Pratap, Sameer Agarwal, T. Meyarivan A fast and elitist multiobjective genetic algorithm: NSGA-II IEEE Transactions on Evolutionary Computation 6, 182-197 (2002)
• Sebastian Deffner, Juan Pablo Paz, Wojciech H. Zurek Quantum work and the thermodynamic cost of quantum measurements Physical Review E 94,  (2016)
• S. Deffner, M. Brunner, E. Lutz Quantum fluctuation theorems in the strong damping limit EPL 94,  (2011)
• Sebastian Deffner, Christopher Jarzynski Information processing and the second law of thermodynamics: An inclusive, Hamiltonian approach Physical Review X 3,  (2014)
• Vincent Degos, Thomas Lescot, Abderrezak Zouaoui, Harold Hermann, Françoise Préteux, Pierre Coriat, Louis Puybasset Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury Anesthesia and Analgesia 103, 1229-1236 (2006)
• Stanislas Dehaene, Lionel Naccache Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework Cognition 79, 1-37 (2001)
• Stanislas Dehaene, Jean Pierre Changeux Experimental and Theoretical Approaches to Conscious Processing Neuron 70, 200-227 (2011)
• Anatole S. Dekaban, Doris Sadowsky Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights Annals of Neurology 4, 345-356 (1978)
• Erez Dekel, Uri Alon Optimality and evolutionary tuning of the expression level of a protein Nature 436, 588-592 (2005)
• C. Del Negro, J. M. Edeline Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) European Journal of Neuroscience 14, 1752 (2001)
• Lídia Del Rio, Johan Åberg, Renato Renner, Oscar Dahlsten, Vlatko Vedral The thermodynamic meaning of negative entropy Nature 474, 61-63 (2011)
• Pierre Delforge, Josh Whitney Data Center Efficiency Assessment Natural Resources Defense Council (NRDC) , 35 (2014)
• Hui Deng, Hartmut Haug, Yoshihisa Yamamoto Exciton-polariton Bose-Einstein condensation Reviews of Modern Physics 82, 1489-1537 (2010)
• Martin Depken, Stephan W. Grill, Juan M.R. Parrondo Intermittent Transcription Dynamics for the Rapid Production of Long Transcripts of High Fidelity Cell Reports 5, 521-530 (2013)
• Bernard Derrida Non-equilibrium steady states: Fluctuations and large deviations of the density and of the current Journal of Statistical Mechanics: Theory and Experiment ,  (2007)
• Shawn K. Desai, Justin P. Gallivan Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation Journal of the American Chemical Society 126, 13247-13254 (2004)
• Anders Dessmark, Andrzej Lingas, Andrzej Proskurowski Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 1136, 501-513 (1996)
• Peter B. Detwiler, Sharad Ramanathan, Anirvan Sengupta, Boris I. Shraiman Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina Biophysical Journal 79, 2801-2817 (2000)
• Giovanni Diana, G. Baris Bagci, Massimiliano Esposito Finite-time erasing of information stored in fermionic bits Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 87,  (2013)
• Alicia Dickenstein, Mercedes Pérez Millán How Far is Complex Balancing from Detailed Balancing? Bulletin of Mathematical Biology 73, 811-828 (2011)
• Jeffrey A. Dickson, Robert D. McLeod, Howard C. Card Stochastic arithmetic implementations of neural networks with in situ learning IEEE International Conference on Neural Networks - Conference Proceedings 1993-January, 711-716 (1993)
• Gregor Diezemann Fluctuation-dissipation relations for Markov processes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 72,  (2005)
• Raoul Dillenschneider, Eric Lutz Memory erasure in small systems Physical Review Letters 102,  (2009)
• L. Dinis, J. M.R. Parrondo, F. J. Cao Closed-loop control strategy with improved current for a flashing ratchet Europhysics Letters 71, 536-541 (2005)
• P. A.M. Dirac A new notation for quantum mechanics Mathematical Proceedings of the Cambridge Philosophical Society 35, 416-418 (1939)
• Alexander Dobrinevski, Erwin Frey Extinction in neutrally stable stochastic Lotka-Volterra models Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• Matthew S. Dodd, Dominic Papineau, Tor Grenne, John F. Slack, Martin Rittner, Franco Pirajno, Jonathan O'Neil, Crispin T.S. Little Evidence for early life in Earth's oldest hydrothermal vent precipitates Nature 543, 60-64 (2017)
• Ian B. Dodd, Kim Sneppen Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states Journal of Molecular Biology 414, 624-637 (2011)
• Ian B. Dodd, Mille A. Micheelsen, Kim Sneppen, Geneviève Thon Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification Cell 129, 813-822 (2007)
• Eizaburo Doi, Michael S. Lewicki A Simple Model of Optimal Population Coding for Sensory Systems PLoS Computational Biology 10,  (2014)
• Sven Dorosz, Michel Pleimling Fluctuation ratios in the absence of microscopic time reversibility Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• David Doty, Monir Hajiaghayi Leaderless deterministic chemical reaction networks Natural Computing 14, 213-223 (2015)
• F. Douarche, S. Ciliberto, A. Petrosyan Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models Journal of Statistical Mechanics: Theory and Experiment , 287-304 (2005)
• F. Douarche, S. Ciliberto, A. Petrosyan, I. Rabbiosi An experimental test of the Jarzynski equality in a mechanical experiment Europhysics Letters 70, 593-599 (2005)
• F. Douarche, S. Joubaud, N. B. Garnier, A. Petrosyan, S. Ciliberto Work fluctuation theorems for harmonic oscillators Physical Review Letters 97,  (2006)
• J. A. Drocco, C. J. Olson Reichhardt, C. Reichhardt Characterizing plastic depinning dynamics with the fluctuation theorem European Physical Journal E 34, 117 (2011)
• Stefan Duhr, Dieter Braun Thermophoretic depletion follows boltzmann distribution Physical Review Letters 96,  (2006)
• T. A.J. Duke, N. Le Novère, D. Bray Conformational spread in a ring of proteins: A stochastic approach to allostery Journal of Molecular Biology 308, 541-553 (2001)
• B. R. Duling, R. M. Berne Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow. Circulation research 27, 669-678 (1970)
• J Durnin Basal Metabolic Rate in Man Basal Metabolic Rate in Man 17, 137-143 (1981)
• John Earman, John D. Norton Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics 30, 1-40 (1999)
• Sean R. Eddy, Richard Durbin RNA sequence analysis using covariance models Nucleic Acids Research 22, 2079-2088 (1994)
• Jeffrey A. Edlund, Nicolas Chaumont, Arend Hintze, Christof Koch, Giulio Tononi, Christoph Adami Integrated information increases with fitness in the evolution of animats PLoS Computational Biology 7,  (2011)
• M. Ehrenberg, C. Blomberg Thermodynamic constraints on kinetic proofreading in biosynthetic pathways Biophysical Journal 31, 333-358 (1980)
• Manfred Eigen Selforganization of matter and the evolution of biological macromolecules Die Naturwissenschaften 58, 465-523 (1971)
• C. F. Ekerot, H. Jörntell Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specific European Journal of Neuroscience 13, 1303-1310 (2001)
• Johann Elbaz, Michal Moshe, Bella Shlyahovsky, Itamar Willner Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors Chemistry - A European Journal 15, 3411-3418 (2009)
• R. J. Ellis Macromolecular crowding: An important but neglected aspect of the intracellular environment Current Opinion in Structural Biology 11, 114-119 (2001)
• Michael B. Elowitz, Stanislas Leibier A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338 (2000)
• Robert G. Endres, Ned S. Wingreen Maximum likelihood and the single receptor Physical Review Letters 103,  (2009)
• Robert G. Endres, Ned S. Wingreen Accuracy of direct gradient sensing by cell-surface receptors Progress in Biophysics and Molecular Biology 100, 33-39 (2009)
• A. Engel Asymptotics of work distributions in nonequilibrium systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80,  (2009)
• A. Engel, R. Nolte Jarzynski equation for a simple quantum system: Comparing two definitions of work EPL 79,  (2007)
• Thorsten Erdmann, Martin Howard, Pieter Rein ten Wolde Role of spatial averaging in the precision of gene expression patterns Physical Review Letters 103,  (2009)
• Jason Ernst, Manolis Kellis Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6577 LNBI, 53 (2011)
• Albert Eschenmoser On a hypothetical generational relationship between HCN and constituents of the reductive citric acid cycle Chemistry and Biodiversity 4, 554-573 (2007)
• C. Van Den Broeck, Massimiliano Esposito Second law and Landauer principle far from equilibrium EPL 95,  (2011)
• Massimiliano Esposito Stochastic thermodynamics under coarse graining Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• K. Lindenberg, C. Van Den Broeck, Massimiliano Esposito Thermoelectric efficiency at maximum power in a quantum dot EPL 85,  (2009)
• Massimiliano Esposito, Gernot Schaller Stochastic thermodynamics for Maxwell demon feedbacks EPL 99,  (2012)
• R. Kawai, K. Lindenberg, C. Van Den Broeck, Massimiliano Esposito Finite-time thermodynamics for a single-level quantum dot EPL 89,  (2010)
• Massimiliano Esposito, Christian Van Den Broeck Three faces of the second law. I. Master equation formulation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Massimiliano Esposito, Niraj Kumar, Katja Lindenberg, Christian Van Den Broeck Stochastically driven single-level quantum dot: A nanoscale finite-time thermodynamic machine and its various operational modes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85,  (2012)
• Massimiliano Esposito, Shaul Mukamel Fluctuation theorems for quantum master equations Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73,  (2006)
• Massimiliano Esposito, Katja Lindenberg, Christian Van Den Broeck Entropy production as correlation between system and reservoir New Journal of Physics 12,  (2010)
• Massimiliano Esposito, Christian Van Den Broeck Three faces of the second law. I. Master equation formulation2 Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Denis J. Evans, Debra J. Searles Equilibrium microstates which generate second law violating steady states Physical Review E 50, 1645-1648 (1994)
• Denis J. Evans, G. P. Morriss, E. G.D. Cohen Probability of second law violations in shearing steady states Physical Review Letters 71, 2401-2404 (1993)
• Alessandra Faggionato, Daniele Di Pietro Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications Journal of Statistical Physics 143, 11-32 (2011)
• Damien A. Fair, Alexander L. Cohen, Jonathan D. Power, Jessica A. Church, Francis M. Miezin, Bradley L. Schlaggar, Steven E. Petersen, Nico U.F. Dosenbach Functional brain networks develop from a "local to distributed" organization PLoS Computational Biology 5,  (2009)
• Philippe Faist, Frédéric Dupuis, Jonathan Oppenheim, Renato Renner The minimal work cost of information processing Nature Communications 6,  (2015)
• Claudio Falcón, Eric Falcon Fluctuations of energy flux in a simple dissipative out-of-equilibrium system Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Jean Farago Power fluctuations in stochastic models of dissipative systems Physica A: Statistical Mechanics and its Applications 331, 69-89 (2004)
• Jean Farago Injected power fluctuations in Langevin equation Journal of Statistical Physics 107, 781-803 (2002)
• Scott Federhen The Taxonomy Project , 1-34 (2002)
• Nina Fedoroff, Walter Fontana Genetic networks: Small numbers of big molecules Science 297, 1129-1131 (2002)
• Rainer Feistel, Werner Ebeling Physics of Self-Organization and Evolution Physics of Self-Organization and Evolution ,  (2011)
• M. Feito, F. J. Cao Information and maximum power in a feedback controlled Brownian ratchet European Physical Journal B 59, 63-68 (2007)
• M. Feito, F. J. Cao Optimal operation of feedback flashing ratchets Journal of Statistical Mechanics: Theory and Experiment 2009,  (2009)
• Klebert Feitosa, Narayanan Menon Fluidized granular medium as an instance of the fluctuation theorem Physical Review Letters 92,  (2004)
• Daniel J. Felleman, David C. Van Essen Distributed hierarchical processing in the primate cerebral cortex Cerebral Cortex 1, 1-47 (1991)
• Edward H. Feng, Gavin Crooks Far-from-equilibrium measurements of thermodynamic length Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Edward H. Feng, Gavin Crooks Length of time's arrow Physical Review Letters 101,  (2008)
• Haidong Feng, Jin Wang Potential and flux decomposition for dynamical systems and non-equilibrium thermodynamics: Curvature, gauge field, and generalized fluctuation-dissipation theorem Journal of Chemical Physics 135,  (2011)
• Miguel A. Ferreira, Eric Hoekstra, Bo Merkus, Bram Visser, Joost Visser Seflab: A lab for measuring software energy footprints 2013 2nd International Workshop on Green and Sustainable Software, GREENS 2013 - Proceedings , 30-37 (2013)
• Richard P. Feynman Quantum mechanical computers Foundations of Physics 16, 507-531 (1986)
• Suzanne Fielding, Peter Sollich Observable dependence of fluctuation-dissipation relations and effective temperatures Physical Review Letters 88, 506031-506034 (2002)
• József Fiser, Chiayu Chiu, Michael Weliky Small modulation of ongoing cortical dynamics by sensory input during natural vision Nature 431, 573-578 (2004)
• Jennifer L. Fish, Charles A. Lockwood Dietary constraints on encephalization in primates American Journal of Physical Anthropology 120, 171-181 (2003)
• Jessica C. Flack, David C. Krakauer Challenges for complexity measures: A perspective from social dynamics and collective social computation Chaos 21,  (2011)
• Aaron Fluitt, Elsje Pienaar, Hendrik Viljoen Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis Computational Biology and Chemistry 31, 335-346 (2007)
• Hans C. Fogedby, Alberto Imparato Heat distribution function for motion in a general potential at low temperature Journal of Physics A: Mathematical and Theoretical 42,  (2009)
• Hans C. Fogedby, Alberto Imparato Heat flow in chains driven by thermal noise Journal of Statistical Mechanics: Theory and Experiment 2012,  (2012)
• Hans C. Fogedby, Alberto Imparato A bound particle coupled to two thermostats Journal of Statistical Mechanics: Theory and Experiment 2011,  (2011)
• Alex Fornito, Andrew Zalesky, Christos Pantelis, Edward T. Bullmore Schizophrenia, neuroimaging and connectomics NeuroImage 62, 2296-2314 (2012)
• Alex Fornito, Edward T. Bullmore What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? Current Opinion in Psychiatry 23, 239-249 (2010)
• Michael D. Fox, Abraham Z. Snyder, Justin L. Vincent, Marcus E. Raichle Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior Neuron 56, 171-184 (2007)
• Thomas Franosch, Matthias Grimm, Maxim Belushkin, Flavio M. Mor, Giuseppe Foffi, László Forró, Sylvia Jeney Resonances arising from hydrodynamic memory in Brownian motion Nature 478, 85-88 (2011)
• Edward Fredkin An informational process based on reversible universal cellular automata Physica D: Nonlinear Phenomena 45, 254-270 (1990)
• Edward Fredkin, Tommaso Toffoli Conservative logic International Journal of Theoretical Physics 21, 219-253 (1982)
• Leon French, Paul Pavlidis Relationships between gene expression and brain wiring in the adult rodent brain PLoS Computational Biology 7,  (2011)
• Michael R. Frey Quantum speed limits-primer, perspectives, and potential future directions Quantum Information Processing 15, 3919-3950 (2016)
• Erwin Frey, Klaus Kroy Brownian motion: A paradigm of soft matter and biological physics Annalen der Physik (Leipzig) 14, 20-50 (2005)
• James L. Friar, Terrance Goldman, Juan Pérez-Mercader Genome sizes and the benford distribution PLoS ONE 7,  (2012)
• J. L. Friar, T. Goldman, J. Pérez-Mercader Ubiquity of Benford's law and emergence of the reciprocal distribution Physics Letters, Section A: General, Atomic and Solid State Physics 380, 1895-1899 (2016)
• Fabio Frustaci, Mahmood Khayatzadeh, David Blaauw, Dennis Sylvester, Massimo Alioto SRAM for error-tolerant applications with dynamic energy-quality management in 28 nm CMOS IEEE Journal of Solid-State Circuits 50, 1310-1323 (2015)
• Stephen M. Fuchs, Krzysztof Krajewski, Richard W. Baker, Victoria L. Miller, Brian D. Strahl Influence of combinatorial histone modifications on antibody and effector protein recognition Current Biology 21, 53-58 (2011)
• Youhei Fujitani, Hiroyuki Suzuki Jarzynski equality modified in the linear feedback system Journal of the Physical Society of Japan 79,  (2010)
• Ken Funo, Yu Watanabe, Masahito Ueda Integral quantum fluctuation theorems under measurement and feedback control Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 88,  (2013)
• Ken Funo, Yu Watanabe, Masahito Ueda Thermodynamic work gain from entanglement Physical Review A - Atomic, Molecular, and Optical Physics 88,  (2013)
• L. Fusco, S. Pigeon, A. Xuereb, L. Mazzola, M. Campisi, A. Ferraro, M. Paternostro, G. De Chiara, T. J.G. Apollaro Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements Physical Review X 4,  (2014)
• Agnieszka Gacek, Joseph Strauss The chromatin code of fungal secondary metabolite gene clusters Applied Microbiology and Biotechnology 95, 1389-1404 (2012)
• G. Gallavotti, E. G.D. Cohen Dynamical ensembles in nonequilibrium statistical mechanics Physical Review Letters 74, 2694-2697 (1995)
• Lazaros K. Gallos, Mariano Sigman, Hernan A. Makse Global integration of self-similar modules in functional brain networks Frontiers in Physiology ,  (2011)
• Fernando Galve, Eric Lutz Nonequilibrium thermodynamic analysis of squeezing Physical Review A - Atomic, Molecular, and Optical Physics 79,  (2009)
• Sriram Ganeshan, N. A. Sinitsyn Fluctuation relations for current components in mesoscopic electric circuits Physical Review B - Condensed Matter and Materials Physics 84,  (2011)
• T. Gao, E. Estrecho, K. Y. Bliokh, T. C.H. Liew, M. D. Fraser, S. Brodbeck, M. Kamp, C. Schneider, S. Höfling, Y. Yamamoto, F. Nori, Y. S. Kivshar, A. G. Truscott, R. G. Dall, E. A. Ostrovskaya Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard Nature 526, 554-558 (2015)
• J. A. Garcia-Horsman, B. Barquera, J. Rumbley, J. Ma, R. B. Gennis The superfamily of heme-copper respiratory oxidases Journal of Bacteriology 176, 5587-5600 (1994)
• Ignacio García-Mata, Augusto J. Roncaglia, Diego A. Wisniacki Quantum-to-classical transition in the work distribution for chaotic systems Physical Review E 95,  (2017)
• Bartłomiej Gardas, Sebastian Deffner Thermodynamic universality of quantum Carnot engines Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 92,  (2015)
• Kathryn E. Gardner, C. David Allis, Brian D. Strahl Operating on chromatin, a colorful language where context matters Journal of Molecular Biology 409, 36-46 (2011)
• N. Garnier, S. Ciliberto Nonequilibrium fluctuations in a resistor Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 71,  (2005)
• Patrick Garrigan, Charles P. Ratliff, Jennifer M. Klein, Peter Sterling, David H. Brainard, Vijay Balasubramanian Design of a trichromatic cone array PLoS Computational Biology 6,  (2010)
• Pierre Gaspard Fluctuation theorem for nonequilibrium reactions Journal of Chemical Physics 120, 8898-8905 (2004)
• P. Gaspard, E. Gerritsma The stochastic chemomechanics of the F1-ATPase molecular motor Journal of Theoretical Biology 247, 672-686 (2007)
• B. Gaveau, M. Moreau, L. S. Schulman Stochastic thermodynamics and sustainable efficiency in work production Physical Review Letters 105,  (2010)
• B. Gaveau, M. Moreau, L. S. Schulman Constrained maximal power in small engines Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82,  (2010)
• Bernard Gaveau, L. S. Schulman A general framework for non-equilibrium phenomena: The master equation and its formal consequences Physics Letters, Section A: General, Atomic and Solid State Physics 229, 347-353 (1997)
• Hao Ge Multivariable fluctuation theorems in the steady-state cycle kinetics of single enzyme with competing substrates Journal of Physics A: Mathematical and Theoretical 45,  (2012)
• Hao Ge, Hong Qian Physical origins of entropy production, free energy dissipation, and their mathematical representations Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 81,  (2010)
• Hao Ge, Min Qian, Hong Qian Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics Physics Reports 510, 87-118 (2012)
• Hao Ge, Hong Qian Nonequilibrium thermodynamic formalism of nonlinear chemical reaction systems with Waage-Guldberg's law of mass action Chemical Physics 472, 241-248 (2016)
• Philipp Geiger, Christoph Dellago Optimum protocol for fast-switching free-energy calculations Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 81,  (2010)
• Anthony J. Genot, Jonathan Bath, Andrew J. Turberfield Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums Angewandte Chemie - International Edition 52, 1189-1192 (2013)
• Pier Luigi Gentili Untangling Complex Systems: A Grand Challenge for Science ,  (2018)
• J. E. Geusic, E. O. Schulz-DuBios, H. E.D. Scovil Quantum equivalent of the Carnot cycle Physical Review 156, 343-351 (1967)
• T. Gilbert Entropy fluctuations in shell models of turbulence Europhysics Letters 67, 172-178 (2004)
• Daniel T. Gillespie A rigorous derivation of the chemical master equation Physica A: Statistical Mechanics and its Applications 188, 404-425 (1992)
• Daniel T. Gillespie A general method for numerically simulating the stochastic time evolution of coupled chemical reactions Journal of Computational Physics 22, 403-434 (1976)
• R. J. Gillespie Fifty years of the VSEPR model Coordination Chemistry Reviews 252, 1315-1327 (2008)
• Vittorio Giovannetti, Seth Lloyd, Lorenzo MacCone Quantum Measurement Bounds beyond the Uncertainty Relations Physical Review Letters 108,  (2012)
• Aljaž Godec, Ralf Metzler Signal focusing through active transport Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 92,  (2015)
• Nikos K. Logothetis, Jozien B.M. Goense Neurophysiology of the BOLD fMRI Signal in Awake Monkeys Current Biology 18, 631-640 (2008)
• Walter I. Goldburg, Yadin Y. Goldschmidt, Hamid Kellay Fluctuation and dissipation in liquid-crystal electroconvection Physical Review Letters 87, 245502-1-245502-4 (2001)
• Oded Goldreich, Madhu Sudan, Luca Trevisan From logarithmic advice to single-bit advice Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6650 LNCS, 109-113 (2011)
• Ramin Golestanian Synthetic mechanochemical molecular swimmer Physical Review Letters 105,  (2010)
• D. Golubev, Y. Utsumi, M. Marthaler, G. Schön Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer AIP Conference Proceedings 1566, 261-262 (2013)
• A. Gomez-Marin, J. M.R. Parrondo, C. Van Den Broeck Lower bounds on dissipation upon coarse graining Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 78,  (2008)
• Alex Gomez-Marin, Tim Schmiedl, Udo Seifert Optimal protocols for minimal work processes in underdamped stochastic thermodynamics Journal of Chemical Physics 129,  (2008)
• A. Gomez-Marin, J. M. Sancho Tight coupling in thermal Brownian motors Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74,  (2006)
• A. Gomez-Marin, I. Pagonabarraga Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74,  (2006)
• Juan Ruben Gomez-Solano, Artyom Petrosyan, Sergio Ciliberto, Christian Maes Fluctuations and response in a non-equilibrium micron-sized system Journal of Statistical Mechanics: Theory and Experiment 2011,  (2011)
• J. R. Gomez-Solano, A. Petrosyan, S. Ciliberto, R. Chetrite, K. Gawȩdzki Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State Physical Review Letters 103,  (2009)
• J. R. Gomez-Solano, A. Petrosyan, S. Ciliberto Heat fluctuations in a nonequilibrium bath Physical Review Letters 106,  (2011)
• J. R. Gomez-Solano, L. Bellon, A. Petrosyan, S. Ciliberto Steady-state fluctuation relations for systems driven by an external random force EPL 89,  (2010)
• Manoj Gopalkrishnan A cost/speed/reliability tradeoff to erasing 9252, 192-201 (2015)
• Manoj Gopalkrishnan A Cost / Speed / Reliability Trade-off in Erasing a Bit ,  (2015)
• Irina V. Gopich, Attila Szabo Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation Journal of Chemical Physics 117, 507-517 (2002)
• Christopher C. Govern, Pieter Rein ten Wolde Energy dissipation and noise correlations in biochemical sensing Physical Review Letters 113,  (2014)
• Christopher C. Govern, Pieter Rein ten Wolde Fundamental limits on sensing chemical concentrations with linear biochemical networks Physical Review Letters 109,  (2012)
• Manu S. Goyal, Michael Hawrylycz, Jeremy A. Miller, Abraham Z. Snyder, Marcus E. Raichle Aerobic glycolysis in the human brain is associated with development and neotenous gene expression Cell Metabolism 19, 49-57 (2014)
• Robert Graham Path integral formulation of general diffusion processes Zeitschrift für Physik B Condensed Matter and Quanta 26, 281-290 (1977)
• Léo Granger, Holger Kantz Thermodynamic cost of measurements Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 84,  (2011)
• Léo Granger, Holger Kantz Differential Landauer's principle EPL 101,  (2013)
• Thomas Gregor, David W. Tank, Eric F. Wieschaus, William Bialek Probing the Limits to Positional Information Cell 130, 153-164 (2007)
• Michael Grunstein Yeast heterochromatin: Regulation of its assembly and inheritance by histones Cell 93, 325-328 (1998)
• Jeremy Gunawardena Chemical reaction network theory for in-silico biologists Bauer Center for Genomics Research Harvard University Cambridge MA 138, 1-26 (2003)
• Li Sha Guo, Bao Ming Xu, Jian Zou, Bin Shao Improved thermometry of low-temperature quantum systems by a ring-structure probe Physical Review A - Atomic, Molecular, and Optical Physics 92,  (2015)
• Amar Nath Gupta, Abhilash Vincent, Krishna Neupane, Hao Yu, Feng Wang, Michael T. Woodside Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements Nature Physics 7, 631-634 (2011)
• P. K. Gupta, R. Kumaresan Binary Multiplication with PN Sequences IEEE Transactions on Acoustics, Speech, and Signal Processing 36, 603-606 (1988)
• Vaibhav Gupta, Debabrata Mohapatra, Anand Raghunathan, Kaushik Roy Low-power digital signal processing using approximate adders IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 32, 124-137 (2013)
• Purnananda Guptasarma Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? BioEssays 17, 987-997 (1995)
• Hirac Gurden, Naoshige Uchida, Zachary F. Mainen Sensory-Evoked Intrinsic Optical Signals in the Olfactory Bulb Are Coupled to Glutamate Release and Uptake Neuron 52, 335-345 (2006)
• Venkatesan Guruswami, Madhu Sudan Improved decoding of reed-solomon and algebraic-geometry codes IEEE Transactions on Information Theory 45, 1757-1767 (1999)
• Venkatesan Guruswami, Christopher Umans, Salil Vadhan Unbalanced expanders and randomness extractors from parvaresh-vardy codes Proceedings of the Annual IEEE Conference on Computational Complexity , 96-108 (2007)
• Jamie A. Hackett, Jan J. Zylicz, M. Azim Surani Parallel mechanisms of epigenetic reprogramming in the germline Trends in Genetics 28, 164-174 (2012)
• Torkel Hafting, Marianne Fyhn, Sturla Molden, May Britt Moser, Edvard I. Moser Microstructure of a spatial map in the entorhinal cortex Nature 436, 801-806 (2005)
• Patric Hagmann, Leila Cammoun, Xavier Gigandet, Reto Meuli, Christopher J. Honey, J. Van Wedeen, Olaf Sporns Mapping the structural core of human cerebral cortex PLoS Biology 6, 1479-1493 (2008)
• A. M. Hahn, H. Then Using bijective maps to improve free-energy estimates Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Bilal Haider, David A. McCormick Rapid Neocortical Dynamics: Cellular and Network Mechanisms Neuron 62, 171-189 (2009)
• Armin Haken The intractability of resolution Theoretical Computer Science 39, 297-308 (1985)
• Bradley Hall, Jay R. Hesselberth, Andrew D. Ellington Computational selection of nucleic acid biosensors via a slip structure model Biosensors and Bioelectronics 22, 1939-1947 (2007)
• Elissa A. Hallem, John R. Carlson Coding of Odors by a Receptor Repertoire Cell 125, 143-160 (2006)
• Petter Hammar, Prune Leroy, Anel Mahmutovic, Erik G. Marklund, Otto G. Berg, Johan Elf The lac repressor displays facilitated diffusion in living cells Science 336, 1595-1598 (2012)
• Jie Han, Michael Orshansky Approximate computing: An emerging paradigm for energy-efficient design Proceedings - 2013 18th IEEE European Test Symposium, ETS 2013 ,  (2013)
• Klaus H. Hansen, Adrian P. Bracken, Diego Pasini, Nikolaj Dietrich, Simmi S. Gehani, Astrid Monrad, Juri Rappsilber, Mads Lerdrup, Kristian Helin A model for transmission of the H3K27me3 epigenetic mark Nature Cell Biology 10, 1291-1300 (2008)
• Omar Haq, Ronald M. Levy, Alexandre V. Morozov, Michael Andrec Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease BMC Bioinformatics 10,  (2009)
• Takahiro Harada Macroscopic expression connecting the rate of energy dissipation with the violation of the fluctuation response relation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79,  (2009)
• Takahiro Harada, Shin Ichi Sasa Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73,  (2006)
• Julia J. Harris, Renaud Jolivet, David Attwell Energy use constrains brain information processing Neuron 75, 762-777 (2012)
• Jérémie Harris, Frédéric Bouchard, Enrico Santamato, Wojciech H. Zurek, Robert W. Boyd, Ebrahim Karimi Quantum probabilities from quantum entanglement: Experimentally unpacking the Born rule New Journal of Physics 18,  (2016)
• R. J. Harris, G. M. Schütz Fluctuation theorems for stochastic dynamics Journal of Statistical Mechanics: Theory and Experiment ,  (2007)
• D. Hartich, A. C. Barato, Udo Seifert Stochastic thermodynamics of bipartite systems: Transfer entropy inequalities and a Maxwell's demon interpretation Journal of Statistical Mechanics: Theory and Experiment 2014,  (2014)
• Hideo Hasegawa Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 84,  (2011)
• H. H. Hasegawa, J. Ishikawa, K. Takara, D. J. Driebe Generalization of the second law for a nonequilibrium initial state Physics Letters, Section A: General, Atomic and Solid State Physics 374, 1001-1004 (2010)
• Andrea Hasenstaub, Yousheng Shu, Bilal Haider, Udo Kraushaar, Alvaro Duque, David A. McCormick Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks Neuron 47, 423-435 (2005)
• T. Hatano, S. Sasa Steady-state thermodynamics of Langevin systems Physical Review Letters 86, 3463-3466 (2001)
• Naomichi Hatano, David R. Nelson Localization transitions in non-hermitian quantum mechanics Physical Review Letters 77, 570-573 (1996)
• Nathaniel A. Hathaway, Oliver Bell, Courtney Hodges, Erik L. Miller, Dana S. Neel, Gerald R. Crabtree Dynamics and memory of heterochromatin in living cells Cell 149, 1447-1460 (2012)
• Kumiko Hayashi, Hiroshi Ueno, Ryota Iino, Hiroyuki Noji Fluctuation theorem applied to F1-ATPase Physical Review Letters 104,  (2010)
• Gerald L. Hazelbauer, Joseph J. Falke, John S. Parkinson Bacterial chemoreceptors: high-performance signaling in networked arrays Trends in Biochemical Sciences 33, 9-19 (2008)
• Yong He, Jinhui Wang, Liang Wang, Zhang J. Chen, Chaogan Yan, Hong Yang, Hehan Tang, Chaozhe Zhu, Qiyong Gong, Yufeng Zang, Alan C. Evans Uncovering intrinsic modular organization of spontaneous brain activity in humans PLoS ONE 4,  (2009)
• Alexander D. Healy Randomness-efficient sampling within NC1 Computational Complexity 17, 3-37 (2008)
• Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459, 108-112 (2009)
• Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome Nature Genetics 39, 311-318 (2007)
• J. A. Henderson, P. A. Robinson Geometric effects on complex network structure in the cortex Physical Review Letters 107,  (2011)
• Emmanuel Hermans Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors Pharmacology and Therapeutics 99, 25-44 (2003)
• Peter W. Higgs Broken symmetries and the masses of gauge bosons Physical Review Letters 13, 508-509 (1964)
• Claus C. Hilgetag, Helen Barbas Role of mechanical factors in the morphology of the primate cerebral cortex PLoS Computational Biology 2, 146-159 (2006)
• Kim Hill, Michael Barton, A. Magdalena Hurtado The emergence of human uniqueness: Characters underlying behavioral modernity Evolutionary Anthropology 18, 187-200 (2009)
• Tori M. Hoehler, Bo Barker Jørgensen Microbial life under extreme energy limitation Nature Reviews Microbiology 11, 83-94 (2013)
• K. H. Hoffmann, J. Burzler, A. Fischer, M. Schaller, S. Schubert Optimal Process Paths for Endoreversible Systems Journal of Non-Equilibrium Thermodynamics 28, 233-268 (2003)
• T. Hondou Equation of state in a small system: Violation of an assumption of Maxwell's demon EPL 80,  (2007)
• Tsuyoshi Hondou, Ken Sekimoto Unattainability of Carnot efficiency in the Brownian heat engine Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 62, 6021-6025 (2000)
• Christopher J. Honey, Olaf Sporns Dynamical consequences of lesions in cortical networks Human Brain Mapping 29, 802-809 (2008)
• J Hong, B Lambson, S Dhuey, J Bokor Experimental verification of Landauer's principle in erasure of nanomagnetic memory bits arXiv preprint arXiv:1411.6730 , 1-20 (2014)
• John E. Hopcroft, Rajeev Motwani, Jeffrey D. Ullman Introduction to Automata Theory, Languages, and Computation ACM SIGACT News 32, 60-65 (2001)
• J. Hoppenau, A. Engel On the energetics of information exchange EPL 105,  (2014)
• F. Horn, R. Jackson General mass action kinetics Archive for Rational Mechanics and Analysis 47, 81-116 (1972)... further results