Template:Reference Material Query
From Thermodynamics of Computation
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Author name | Source name | Year | Keyword | Citation count | Page views | |
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Some informational aspects of visual perception | Fred Attneave | Psychological Review | 1954 | INFORMATION THEORY, &, PERCEPTION, VISUAL, INFORMATION, ASPECTS, VISION, VISUAL PERCEPTION | 1,725 | 0 |
Efficiency and cost of economical brain functional networks | Sophie Achard, Ed Bullmore | PLoS Computational Biology | 2007 | 1,526 | 0 | |
Robustness in bacterial chemotaxis | U. Alon, M. G. Surette, N. Barkai, S. Leibler | Nature | 1999 | 856 | 0 | |
The neural basis of functional brain imaging signals | David Attwell, Costantino Iadecola | Trends in Neurosciences | 2002 | 643 | 1 | |
CNS energy metabolism as related to function | Adelbert Ames | Brain Research Reviews | 2000 | Adenylate kinase, Aerobic glycolysis, CNS, Calcium, Carbonic anhydrase, Creatine kinase, Energy metabolism | 493 | 0 |
Low-Power Digital Systems Based on Adiabatic-Switching Principles | William C. Athas, J. Svensson, Jeffrey G. Koller, Nestoras Tzartzanis, Ying Chin Chou | IEEE Transactions on Very Large Scale Integration (VLSI) Systems | 1994 | Adiabatic amplification, adiabatic charging, adiabatic switching, low-power CMOS, reversible computation, switching energy reduction with preserved signal energies | 392 | 1 |
The quantum open system as a model of the heat engine | R. Alicki | Journal of Physics A: General Physics | 1979 | 381 | 4 | |
Modeling the impact of lesions in the human brain | Jeffrey Alstott, Michael Breakspear, Patric Hagmann, Leila Cammoun, Olaf Sporns | PLoS Computational Biology | 2009 | 347 | 0 | |
Computation in networks of passively mobile finite-state sensors | Dana Angluin, James Aspnes, Zoë Diamadi, Michael J. Fischer, René Peralta | Distributed Computing | 2006 | Diffuse computation, Finite-state agent, Intermittent communication, Mobile agent, Sensor net, Stable computation | 321 | 1 |
Current trends in finite-time thermodynamics | Bjarne Andresen | Angewandte Chemie - International Edition | 2011 | distillation, finite-time thermodynamics, heat engine, optimization, thermodynamics | 308 | 1 |
Forward flux sampling for rare event simulations | Rosalind J. Allen, Chantal Valeriani, Pieter Rein ten Wolde | Journal of Physics Condensed Matter | 2009 | 277 | 0 | |
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice | Nixon M. Abraham, Hartwig Spors, Alan Carleton, Troy W. Margrie, Thomas Kuner, Andreas T. Schaefer | Neuron | 2004 | 270 | 0 | |
Combined analog and action potential coding in hippocampal mossy fibers | Henrik Alle, Jörg R.P. Geiger | Science | 2006 | 255 | 0 | |
Nucleosomes are well positioned in exons and carry characteristic histone modifications | Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski | Genome Research | 2009 | 231 | 0 | |
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering | Andrea Arcuri, Lionel Briand | Software Testing Verification and Reliability | 2014 | Bonferroni adjustment, confidence interval, effect size, nonparametric test, parametric test, statistical difference, survey, systematic review | 228 | 3 |
Theory of reversible diffusion-influenced reactions | Noam Agmon, Attila Szabo | The Journal of Chemical Physics | 1990 | 227 | 0 | |
Experimental test of the quantum Jarzynski equality with a trapped-ion system | Shuoming An, Jing Ning Zhang, Mark Um, Dingshun Lv, Yao Lu, Junhua Zhang, Zhang Qi Yin, H. T. Quan, Kihwan Kim | Nature Physics | 2015 | 207 | 0 | |
The anatomical distance of functional connections predicts brain network topology in health and schizophrenia | Aaron F. Alexander-Bloch, Petra E. Vértes, Reva Stidd, François Lalonde, Liv Clasen, Judith Rapoport, Jay Giedd, Edward T. Bullmore, Nitin Gogtay | Cerebral Cortex | 2013 | brain network, functional connectivity, graph theory, normal development, schizophrenia | 199 | 0 |
Argonaute proteins couple chromatin silencing to alternative splicing | Maya Ameyar-Zazoua, Christophe Rachez, Mouloud Souidi, Philippe Robin, Lauriane Fritsch, Robert Young, Nadya Morozova, Romain Fenouil, Nicolas Descostes, Jean Christophe Andrau, Jacques Mathieu, Ali Hamiche, Slimane Ait-Si-Ali, Christian Muchardt, Eric Batsché, Annick Harel-Bellan | Nature Structural and Molecular Biology | 2012 | 190 | 2 | |
Complex parameter landscape for a complex neuron model | Pablo Achard, Erik De Schutter | PLoS Computational Biology | 2006 | 169 | 2 | |
Fluctuation theorem for currents and Schnakenberg network theory | David Andrieux, Pierre Gaspard | Journal of Statistical Physics | 2007 | Affinities, Entropy production, Fluctuation theorem, Nonequilibrium steady state, Thermodynamic forces | 156 | 1 |
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine | J. Astrup, P. M. Sorensen, H. R. Sorensen | Anesthesiology | 1981 | 141 | 0 | |
Neuroenergetics and the kinetic design of excitatory synapses | David Attwell, Alasdair Gibb | Nature Reviews Neuroscience | 2005 | 137 | 4 | |
Information theory in molecular biology | Christoph Adami | Physics of Life Reviews | 2004 | 135 | 1 | |
Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex | Yusuke Adachi, Takahiro Osada, Olaf Sporns, Takamitsu Watanabe, Teppei Matsui, Kentaro Miyamoto, Yasushi Miyashita | Cerebral Cortex | 2012 | anatomical connectivity, computational model, fMRI, functional connectivity, network | 133 | 1 |
Split decision: What happens to nucleosomes during DNA replication? | Anthony T. Annunziato | Journal of Biological Chemistry | 2005 | 131 | 0 | |
A simple population protocol for fast robust approximate majority | Dana Angluin, James Aspnes, David Eisenstat | Distributed Computing | 2008 | Byzantine faults, Epidemics, Majority, Population protocols | 122 | 2 |
Fast computation by population protocols with a leader | Dana Angluin, James Aspnes, David Eisenstat | Distributed Computing | 2008 | 120 | 0 | |
A fluctuation theorem for currents and non-linear response coefficients | David Andrieux, Pierre Gaspard | Journal of Statistical Mechanics: Theory and Experiment | 2007 | Current fluctuations, Exact results, Stationary states (theory) | 106 | 6 |
Extracting work from a single heat bath through feedback | D. Abreu, Udo Seifert | EPL | 2011 | 100 | 3 | |
Fuzzy Memoization for Floating-Point Multimedia Applications | Carlos Alvarez, Jesús Corbal, Mateo Valero | IEEE Transactions on Computers | 2005 | Low-power design, real-time and embedded systems, special-purpose and application-based, systems | 94 | 2 |
Predictive information and explorative behavior of autonomous robots | N. Ay, N. Bertschinger, R. Der, F. Güttler, E. Olbrich | European Physical Journal B | 2008 | 93 | 2 | |
Exploiting correlation in stochastic circuit design | Armin Alaghi, John P. Hayes | 2013 IEEE 31st International Conference on Computer Design, ICCD 2013 | 2013 | Stochastic computing, low-power design, signal correlation, stochastic circuit design | 80 | 0 |
Thermodynamics of genuine nonequilibrium states under feedback control | David Abreu, Udo Seifert | Physical Review Letters | 2012 | 79 | 6 | |
Digital genetics: Unravelling the genetic basis of evolution | Christoph Adami | Nature Reviews Genetics | 2006 | 78 | 2 | |
Fluctuation theorem for transport in mesoscopic systems | David Andrieux, Pierre Gaspard | Journal of Statistical Mechanics: Theory and Experiment | 2006 | Current fluctuations, Exact results, Stationary states (theory) | 78 | 0 |
Fluctuation theorems for quantum processes | Tameem Albash, Daniel A. Lidar, Milad Marvian, Paolo Zanardi | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2013 | 77 | 0 | |
The statistical neuroanatomy of frontal networks in the macaque | Bruno B. Averbeck, Moonsang Seo | PLoS Computational Biology | 2008 | 73 | 0 | |
An introduction to population protocols | James Aspnes, Eric Ruppert | Middleware for Network Eccentric and Mobile Applications | 2009 | 70 | 4 | |
Refined Second Law of Thermodynamics for Fast Random Processes | Erik Aurell, Krzysztof Gawȩdzki, Carlos Mejía-Monasterio, Roya Mohayaee, Paolo Muratore-Ginanneschi | Journal of Statistical Physics | 2012 | Landauer principle, Monge-Kantorovich optimal mass transport, Second Law of Thermodynamics | 69 | 0 |
Optimal protocols and optimal transport in stochastic thermodynamics | Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi | Physical Review Letters | 2011 | 67 | 0 | |
Symmetries of generating functionals of Langevin processes with colored multiplicative noise | Camille Aron, Giulio Biroli, Leticia F. Cugliandolo | Journal of Statistical Mechanics: Theory and Experiment | 2010 | Fluctuations (theory), Rigorous results in statistical mechanics, Stochastic particle dynamics (theory), Stochastic processes (theory) | 65 | 0 |
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors | David Andrieux, Pierre Gaspard | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2006 | 59 | 0 | |
Current, maximum power and optimized efficiency of a Brownian heat engine | Mesfin Asfaw, Mulugeta Bekele | European Physical Journal B | 2004 | 55 | 0 | |
Thermodynamic efficiency of information and heat flow | Armen E. Allahverdyan, Dominik Janzing, Guenter Mahler | Journal of Statistical Mechanics: Theory and Experiment | 2009 | Communication, Source and channel coding, Supply and information networks | 52 | 1 |
Lower bounds for polynomial calculus: Non-binomial case | Mic hael Alekhnovich, Alexander A. Razborov | Annual Symposium on Foundations of Computer Science - Proceedings | 2001 | 50 | 0 | |
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium | A. E. Allahverdyan, Th M. Nieuwenhuizen | Physica A: Statistical Mechanics and its Applications | 2002 | Mathematical proof, Perpetual motion, Persistent currents, Second law, Thomson formulation | 48 | 0 |
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system | John C. Anderson, Simon B. Laughlin | Vision Research | 2000 | Blue cones, Colour, Contrast gain, Frequency response, Photoreceptor, SNR, Vision | 47 | 0 |
Wiring cost in the organization of a biological neuronal network | Yong Yeol Ahn, Hawoong Jeong, Beom Jun Kim | Physica A: Statistical Mechanics and its Applications | 2006 | Biological network, Neuronal network, Wiring cost | 46 | 1 |
The Use of Information Theory in Evolutionary Biology | Christoph Adami | Annals of the New York Academy of Sciences | 2012 | Animat evolution, Evolution, Information theory, Protein evolution | 45 | 1 |
Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator | Y. Apertet, H. Ouerdane, C. Goupil, Ph Lecoeur | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2012 | 42 | 0 | |
Entropy production of cyclic population dynamics | Benjamin Andrae, Jonas Cremer, Tobias Reichenbach, Erwin Frey | Physical Review Letters | 2010 | 37 | 2 | |
A spectral transform approach to stochastic circuits | Armin Alaghi, John P. Hayes | Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors | 2012 | Design methodology, logic synthesis, probabilistic methods, stochastic computing | 36 | 0 |
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis | Armin Alaghi, John P. Hayes | IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems | 2015 | Logic synthesis, design methodology, probabilistic methods, stochastic circuit optimization, stochastic computing | 32 | 0 |
Could information theory provide an ecological theory of sensory processing? | Joseph J. Atick | Network: Computation in Neural Systems | 2011 | 31 | 0 | |
Transient fluctuation relations for time-dependent particle transport | Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny | Physical Review B - Condensed Matter and Materials Physics | 2010 | 31 | 0 | |
Fluctuation-preserving coarse graining for biochemical systems | Bernhard Altaner, Jürgen Vollmer | Physical Review Letters | 2012 | 26 | 0 | |
How much non-coding DNA do eukaryotes require? | Sebastian E. Ahnert, Andrei Zinovyev, Thomas M.A. Fink | Journal of Theoretical Biology | 2008 | Accelerated networks, Genetic networks, Minimum, Prokaryotes | 26 | 0 |
Directing reprogramming to pluripotency by transcription factors | Kenjiro Adachi, Hans R. Schöler | Current Opinion in Genetics and Development | 2012 | 25 | 0 | |
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice | M. Antoniotti, C. Piazza, A. Policriti, M. Simeoni, B. Mishra | Theoretical Computer Science | 2004 | Biochemical models, Bisimulation, Collapsing, Hybrid automata | 21 | 0 |
Modeling an efficient Brownian heat engine | Mesfin Asfaw | European Physical Journal B | 2008 | 21 | 0 | |
Memory improves precision of cell sensing in fluctuating environments | Gerardo Aquino, Luke Tweedy, Doris Heinrich, Robert G. Endres | Scientific Reports | 2014 | 19 | 0 | |
Optimum walking techniques for idealized animals | A. S. Jayes, R. Mc N. Alexander | Journal of Zoology | 1978 | 19 | 0 | |
Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths | B. Altaner, S. Grosskinsky, S. Herminghaus, L. Katthän, M. Timme, J. Vollmer | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2012 | 18 | 0 | |
Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete | Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler | Journal of Systems Chemistry | 2012 | 18 | 3 | |
Entropy involved in fidelity of DNA replication | J. Ricardo Arias-Gonzalez | PLoS ONE | 2012 | 16 | 1 | |
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? | Christian P. Amann, Tim Schmiedl, Udo Seifert | Journal of Chemical Physics | 2010 | 15 | 0 | |
Boundary layers in stochastic thermodynamics | Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2012 | 15 | 0 | |
Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models | Bernhard Altaner, Artur Wachtel, Jürgen Vollmer | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2015 | 15 | 0 | |
Network and thermodynamic conditions for a single macroscopic current fluctuation theorem | David Andrieux, Pierre Gaspard | Comptes Rendus Physique | 2007 | Current fluctuations, Entropy production, Fluctuation theorem, Nonequilibrium steady state, Thermodynamic forces | 13 | 0 |
Fluctuation relations and rare realizations of transport observables | Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny | Physical Review Letters | 2010 | 13 | 0 | |
An intermediate level of abstraction for computational systems chemistry | Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler | IEEE/ACM Transactions on Computational Biology and Bioinformatics | 2019 | Pathway, autocatalysis, chemistry, formose, hyperflow, integer linear programming, network flow, non-oxidative glycolysis pathway, reaction network | 8 | 1 |
Increased accuracy of ligand sensing by receptor diffusion on cell surface | Gerardo Aquino, Robert G. Endres | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2010 | 4 | 0 | |
Electromagnetic gauge-freedom and work | A. E. Allahverdyan, S. G. Babajanyan | Journal of Physics A: Mathematical and Theoretical | 2016 | Work-energy relation, electromagnetic interactions, gauge-invariance | 3 | 0 |
Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation | Y. Aharonov, S. Massar, S. Popescu | Physical Review A - Atomic, Molecular, and Optical Physics | 2002 | 2 | 0 | |
On the solution to numerical problems using stochastic arithmetic | René Alt, Jean Luc Lamotte, Svetoslav Markov | 12th GAMM - IMACS International Symposium on Scientific Computing, Computer Arithmetic and Validated Numerics, SCAN 2006, Conference Post-Proceedings | 2006 | 1 | 0 | |
The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution | Leslie C. Aiello, Peter Wheeler | Current Anthropology | 1995 | 0 | 3 | |
What Does the Retina Know about Natural Scenes? | Joseph J. Atick, A. Norman Redlich | Neural Computation | 1992 | 0 | 0 | |
Amorphous computing | Hal Abelson, Jacob Beal, Gerald Jay Sussman | Computational Complexity: Theory, Techniques, and Applications | 2012 | 0 | 3 |