Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

Template:Reference Material Query

From Thermodynamics of Computation
Revision as of 09:04, November 29, 2018 by WikiWorks2 (talk | contribs)
  Author name Source name Year Keyword Citation count Page views
Some informational aspects of visual perception Fred Attneave Psychological Review 1954 INFORMATION THEORY, &, PERCEPTION, VISUAL, INFORMATION, ASPECTS, VISION, VISUAL PERCEPTION 1,725 0
Efficiency and cost of economical brain functional networks Sophie Achard, Ed Bullmore PLoS Computational Biology 2007 1,526 0
Robustness in bacterial chemotaxis U. Alon, M. G. Surette, N. Barkai, S. Leibler Nature 1999 856 0
The neural basis of functional brain imaging signals David Attwell, Costantino Iadecola Trends in Neurosciences 2002 643 1
CNS energy metabolism as related to function Adelbert Ames Brain Research Reviews 2000 Adenylate kinase, Aerobic glycolysis, CNS, Calcium, Carbonic anhydrase, Creatine kinase, Energy metabolism 493 0
Low-Power Digital Systems Based on Adiabatic-Switching Principles William C. Athas, J. Svensson, Jeffrey G. Koller, Nestoras Tzartzanis, Ying Chin Chou IEEE Transactions on Very Large Scale Integration (VLSI) Systems 1994 Adiabatic amplification, adiabatic charging, adiabatic switching, low-power CMOS, reversible computation, switching energy reduction with preserved signal energies 392 1
The quantum open system as a model of the heat engine R. Alicki Journal of Physics A: General Physics 1979 381 4
Modeling the impact of lesions in the human brain Jeffrey Alstott, Michael Breakspear, Patric Hagmann, Leila Cammoun, Olaf Sporns PLoS Computational Biology 2009 347 0
Computation in networks of passively mobile finite-state sensors Dana Angluin, James Aspnes, Zoë Diamadi, Michael J. Fischer, René Peralta Distributed Computing 2006 Diffuse computation, Finite-state agent, Intermittent communication, Mobile agent, Sensor net, Stable computation 321 1
Current trends in finite-time thermodynamics Bjarne Andresen Angewandte Chemie - International Edition 2011 distillation, finite-time thermodynamics, heat engine, optimization, thermodynamics 308 1
Forward flux sampling for rare event simulations Rosalind J. Allen, Chantal Valeriani, Pieter Rein ten Wolde Journal of Physics Condensed Matter 2009 277 0
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice Nixon M. Abraham, Hartwig Spors, Alan Carleton, Troy W. Margrie, Thomas Kuner, Andreas T. Schaefer Neuron 2004 270 0
Combined analog and action potential coding in hippocampal mossy fibers Henrik Alle, Jörg R.P. Geiger Science 2006 255 0
Nucleosomes are well positioned in exons and carry characteristic histone modifications Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski Genome Research 2009 231 0
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering Andrea Arcuri, Lionel Briand Software Testing Verification and Reliability 2014 Bonferroni adjustment, confidence interval, effect size, nonparametric test, parametric test, statistical difference, survey, systematic review 228 3
Theory of reversible diffusion-influenced reactions Noam Agmon, Attila Szabo The Journal of Chemical Physics 1990 227 0
Experimental test of the quantum Jarzynski equality with a trapped-ion system Shuoming An, Jing Ning Zhang, Mark Um, Dingshun Lv, Yao Lu, Junhua Zhang, Zhang Qi Yin, H. T. Quan, Kihwan Kim Nature Physics 2015 207 0
The anatomical distance of functional connections predicts brain network topology in health and schizophrenia Aaron F. Alexander-Bloch, Petra E. Vértes, Reva Stidd, François Lalonde, Liv Clasen, Judith Rapoport, Jay Giedd, Edward T. Bullmore, Nitin Gogtay Cerebral Cortex 2013 brain network, functional connectivity, graph theory, normal development, schizophrenia 199 0
Argonaute proteins couple chromatin silencing to alternative splicing Maya Ameyar-Zazoua, Christophe Rachez, Mouloud Souidi, Philippe Robin, Lauriane Fritsch, Robert Young, Nadya Morozova, Romain Fenouil, Nicolas Descostes, Jean Christophe Andrau, Jacques Mathieu, Ali Hamiche, Slimane Ait-Si-Ali, Christian Muchardt, Eric Batsché, Annick Harel-Bellan Nature Structural and Molecular Biology 2012 190 2
Complex parameter landscape for a complex neuron model Pablo Achard, Erik De Schutter PLoS Computational Biology 2006 169 2
Fluctuation theorem for currents and Schnakenberg network theory David Andrieux, Pierre Gaspard Journal of Statistical Physics 2007 Affinities, Entropy production, Fluctuation theorem, Nonequilibrium steady state, Thermodynamic forces 156 1
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine J. Astrup, P. M. Sorensen, H. R. Sorensen Anesthesiology 1981 141 0
Neuroenergetics and the kinetic design of excitatory synapses David Attwell, Alasdair Gibb Nature Reviews Neuroscience 2005 137 4
Information theory in molecular biology Christoph Adami Physics of Life Reviews 2004 135 1
Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex Yusuke Adachi, Takahiro Osada, Olaf Sporns, Takamitsu Watanabe, Teppei Matsui, Kentaro Miyamoto, Yasushi Miyashita Cerebral Cortex 2012 anatomical connectivity, computational model, fMRI, functional connectivity, network 133 1
Split decision: What happens to nucleosomes during DNA replication? Anthony T. Annunziato Journal of Biological Chemistry 2005 131 0
A simple population protocol for fast robust approximate majority Dana Angluin, James Aspnes, David Eisenstat Distributed Computing 2008 Byzantine faults, Epidemics, Majority, Population protocols 122 2
Fast computation by population protocols with a leader Dana Angluin, James Aspnes, David Eisenstat Distributed Computing 2008 120 0
A fluctuation theorem for currents and non-linear response coefficients David Andrieux, Pierre Gaspard Journal of Statistical Mechanics: Theory and Experiment 2007 Current fluctuations, Exact results, Stationary states (theory) 106 6
Extracting work from a single heat bath through feedback D. Abreu, Udo Seifert EPL 2011 100 3
Fuzzy Memoization for Floating-Point Multimedia Applications Carlos Alvarez, Jesús Corbal, Mateo Valero IEEE Transactions on Computers 2005 Low-power design, real-time and embedded systems, special-purpose and application-based, systems 94 2
Predictive information and explorative behavior of autonomous robots N. Ay, N. Bertschinger, R. Der, F. Güttler, E. Olbrich European Physical Journal B 2008 93 2
Exploiting correlation in stochastic circuit design Armin Alaghi, John P. Hayes 2013 IEEE 31st International Conference on Computer Design, ICCD 2013 2013 Stochastic computing, low-power design, signal correlation, stochastic circuit design 80 0
Thermodynamics of genuine nonequilibrium states under feedback control David Abreu, Udo Seifert Physical Review Letters 2012 79 6
Digital genetics: Unravelling the genetic basis of evolution Christoph Adami Nature Reviews Genetics 2006 78 2
Fluctuation theorem for transport in mesoscopic systems David Andrieux, Pierre Gaspard Journal of Statistical Mechanics: Theory and Experiment 2006 Current fluctuations, Exact results, Stationary states (theory) 78 0
Fluctuation theorems for quantum processes Tameem Albash, Daniel A. Lidar, Milad Marvian, Paolo Zanardi Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2013 77 0
The statistical neuroanatomy of frontal networks in the macaque Bruno B. Averbeck, Moonsang Seo PLoS Computational Biology 2008 73 0
An introduction to population protocols James Aspnes, Eric Ruppert Middleware for Network Eccentric and Mobile Applications 2009 70 4
Refined Second Law of Thermodynamics for Fast Random Processes Erik Aurell, Krzysztof Gawȩdzki, Carlos Mejía-Monasterio, Roya Mohayaee, Paolo Muratore-Ginanneschi Journal of Statistical Physics 2012 Landauer principle, Monge-Kantorovich optimal mass transport, Second Law of Thermodynamics 69 0
Optimal protocols and optimal transport in stochastic thermodynamics Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi Physical Review Letters 2011 67 0
Symmetries of generating functionals of Langevin processes with colored multiplicative noise Camille Aron, Giulio Biroli, Leticia F. Cugliandolo Journal of Statistical Mechanics: Theory and Experiment 2010 Fluctuations (theory), Rigorous results in statistical mechanics, Stochastic particle dynamics (theory), Stochastic processes (theory) 65 0
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors David Andrieux, Pierre Gaspard Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2006 59 0
Current, maximum power and optimized efficiency of a Brownian heat engine Mesfin Asfaw, Mulugeta Bekele European Physical Journal B 2004 55 0
Thermodynamic efficiency of information and heat flow Armen E. Allahverdyan, Dominik Janzing, Guenter Mahler Journal of Statistical Mechanics: Theory and Experiment 2009 Communication, Source and channel coding, Supply and information networks 52 1
Lower bounds for polynomial calculus: Non-binomial case Mic hael Alekhnovich, Alexander A. Razborov Annual Symposium on Foundations of Computer Science - Proceedings 2001 50 0
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium A. E. Allahverdyan, Th M. Nieuwenhuizen Physica A: Statistical Mechanics and its Applications 2002 Mathematical proof, Perpetual motion, Persistent currents, Second law, Thomson formulation 48 0
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system John C. Anderson, Simon B. Laughlin Vision Research 2000 Blue cones, Colour, Contrast gain, Frequency response, Photoreceptor, SNR, Vision 47 0
Wiring cost in the organization of a biological neuronal network Yong Yeol Ahn, Hawoong Jeong, Beom Jun Kim Physica A: Statistical Mechanics and its Applications 2006 Biological network, Neuronal network, Wiring cost 46 1
The Use of Information Theory in Evolutionary Biology Christoph Adami Annals of the New York Academy of Sciences 2012 Animat evolution, Evolution, Information theory, Protein evolution 45 1
Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator Y. Apertet, H. Ouerdane, C. Goupil, Ph Lecoeur Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2012 42 0
Entropy production of cyclic population dynamics Benjamin Andrae, Jonas Cremer, Tobias Reichenbach, Erwin Frey Physical Review Letters 2010 37 2
A spectral transform approach to stochastic circuits Armin Alaghi, John P. Hayes Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors 2012 Design methodology, logic synthesis, probabilistic methods, stochastic computing 36 0
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis Armin Alaghi, John P. Hayes IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems 2015 Logic synthesis, design methodology, probabilistic methods, stochastic circuit optimization, stochastic computing 32 0
Could information theory provide an ecological theory of sensory processing? Joseph J. Atick Network: Computation in Neural Systems 2011 31 0
Transient fluctuation relations for time-dependent particle transport Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny Physical Review B - Condensed Matter and Materials Physics 2010 31 0
Fluctuation-preserving coarse graining for biochemical systems Bernhard Altaner, Jürgen Vollmer Physical Review Letters 2012 26 0
How much non-coding DNA do eukaryotes require? Sebastian E. Ahnert, Andrei Zinovyev, Thomas M.A. Fink Journal of Theoretical Biology 2008 Accelerated networks, Genetic networks, Minimum, Prokaryotes 26 0
Directing reprogramming to pluripotency by transcription factors Kenjiro Adachi, Hans R. Schöler Current Opinion in Genetics and Development 2012 25 0
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice M. Antoniotti, C. Piazza, A. Policriti, M. Simeoni, B. Mishra Theoretical Computer Science 2004 Biochemical models, Bisimulation, Collapsing, Hybrid automata 21 0
Modeling an efficient Brownian heat engine Mesfin Asfaw European Physical Journal B 2008 21 0
Memory improves precision of cell sensing in fluctuating environments Gerardo Aquino, Luke Tweedy, Doris Heinrich, Robert G. Endres Scientific Reports 2014 19 0
Optimum walking techniques for idealized animals A. S. Jayes, R. Mc N. Alexander Journal of Zoology 1978 19 0
Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths B. Altaner, S. Grosskinsky, S. Herminghaus, L. Katthän, M. Timme, J. Vollmer Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2012 18 0
Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler Journal of Systems Chemistry 2012 18 3
Entropy involved in fidelity of DNA replication J. Ricardo Arias-Gonzalez PLoS ONE 2012 16 1
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? Christian P. Amann, Tim Schmiedl, Udo Seifert Journal of Chemical Physics 2010 15 0
Boundary layers in stochastic thermodynamics Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2012 15 0
Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models Bernhard Altaner, Artur Wachtel, Jürgen Vollmer Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2015 15 0
Network and thermodynamic conditions for a single macroscopic current fluctuation theorem David Andrieux, Pierre Gaspard Comptes Rendus Physique 2007 Current fluctuations, Entropy production, Fluctuation theorem, Nonequilibrium steady state, Thermodynamic forces 13 0
Fluctuation relations and rare realizations of transport observables Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny Physical Review Letters 2010 13 0
An intermediate level of abstraction for computational systems chemistry Jakob L. Andersen, Christoph Flamm, Daniel Merkle, Peter Stadler IEEE/ACM Transactions on Computational Biology and Bioinformatics 2019 Pathway, autocatalysis, chemistry, formose, hyperflow, integer linear programming, network flow, non-oxidative glycolysis pathway, reaction network 8 1
Increased accuracy of ligand sensing by receptor diffusion on cell surface Gerardo Aquino, Robert G. Endres Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2010 4 0
Electromagnetic gauge-freedom and work A. E. Allahverdyan, S. G. Babajanyan Journal of Physics A: Mathematical and Theoretical 2016 Work-energy relation, electromagnetic interactions, gauge-invariance 3 0
Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation Y. Aharonov, S. Massar, S. Popescu Physical Review A - Atomic, Molecular, and Optical Physics 2002 2 0
On the solution to numerical problems using stochastic arithmetic René Alt, Jean Luc Lamotte, Svetoslav Markov 12th GAMM - IMACS International Symposium on Scientific Computing, Computer Arithmetic and Validated Numerics, SCAN 2006, Conference Post-Proceedings 2006 1 0
The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution Leslie C. Aiello, Peter Wheeler Current Anthropology 1995 0 3
What Does the Retina Know about Natural Scenes? Joseph J. Atick, A. Norman Redlich Neural Computation 1992 0 0
Amorphous computing Hal Abelson, Jacob Beal, Gerald Jay Sussman Computational Complexity: Theory, Techniques, and Applications 2012 0 3