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- Luigi P. Cordella, Pasquale Foggia, Carlo Sansone, Mario Vento A (sub)graph isomorphism algorithm for matching large graphs IEEE Transactions on Pattern Analysis and Machine Intelligence 26, 1367-1372 (2004)
- Kevin J. Nowka, Gary D. Carpenter, Eric W. MacDonald, Hung C. Ngo, Bishop C. Brock, Koji I. Ishii, Tuyet Y. Nguyen, Jeffrey L. Burns A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling IEEE Journal of Solid-State Circuits 37, 1441-1447 (2002)
- David J. Katz, T. Matthew Edwards, Valerie Reinke, William G. Kelly A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory Cell 137, 308-320 (2009)
- Bernard Yurke, Andrew J. Turberfield, Allen P. Mills, Friedrich C. Simmel, Jennifer L. Neumann A DNA-fuelled molecular machine made of DNA Nature 406, 605-608 (2000)
- Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre Olivier Vidalain, Jing Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander v. Van Den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal A Map of the Interactome Network of the Metazoan C. elegans Science 303, 540-543 (2004)
- Kalyanmoy Deb, Amrit Pratap, Sameer Agarwal, T. Meyarivan A fast and elitist multiobjective genetic algorithm: NSGA-II IEEE Transactions on Evolutionary Computation 6, 182-197 (2002)
- David Andrieux, Pierre Gaspard A fluctuation theorem for currents and non-linear response coefficients Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Francesco Zamponi, Federico Bonetto, Leticia F. Cugliandolo, Jorge Kurchan A fluctuation theorem for non-equilibrium relaxational systems driven by external forces Journal of Statistical Mechanics: Theory and Experiment , 315-365 (2005)
- Geoffrey B. West, James H. Brown, Brian J. Enquist A general model for ontogenetic growth Nature 413, 628-631 (2001)
- Fei Liu, Yu Pin Luo, Ming Chang Huang, Zhong Can Ou-Yang A generalized integral fluctuation theorem for general jump processes Journal of Physics A: Mathematical and Theoretical 42, (2009)
- A. E. Allahverdyan, Th M. Nieuwenhuizen A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium Physica A: Statistical Mechanics and its Applications 305, 542-552 (2002)
- David M. Cohen, Jingna Wei, E. O'Brian Smith, Xiaolian Gao, Michael J. Quast, Louis Sokoloff A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy Magnetic Resonance in Medicine 48, 1063-1067 (2002)
- Klaus H. Hansen, Adrian P. Bracken, Diego Pasini, Nikolaj Dietrich, Simmi S. Gehani, Astrid Monrad, Juri Rappsilber, Mads Lerdrup, Kristian Helin A model for transmission of the H3K27me3 epigenetic mark Nature Cell Biology 10, 1291-1300 (2008)
- Viviana Serreli, Chin Fa Lee, Euan R. Kay, David A. Leigh A molecular information ratchet Nature 445, 523-527 (2007)
- B. Schmittmann, R. K.P. Zia A possible classification of nonequilibrium steady states Journal of Physics A: Mathematical and General 39, (2006)
- Pankaj Mehta, Sidhartha Goyal, Ned S. Wingreen A quantitative comparison of sRNA-based and protein-based gene regulation Molecular Systems Biology 4, (2008)
- Tobias von der Haar A quantitative estimation of the global translational activity in logarithmically growing yeast cells BMC Systems Biology 2, (2008)
- Dana Angluin, James Aspnes, David Eisenstat A simple population protocol for fast robust approximate majority Distributed Computing 21, 87-102 (2008)
- Marcus Kaiser, Claus C. Hilgetag, Arjen Van Ooyen A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions Cerebral Cortex 19, 3001-3010 (2009)
- Hong Qian A simple theory of motor protein kinetics and energetics. II Biophysical Chemistry 83, 35-43 (2000)
- Shan Yu, Debin Huang, Wolf Singer, Danko Nikolić A small world of neuronal synchrony Cerebral Cortex 18, 2891-2901 (2008)
- Da Zhang, Hui Li A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms IEEE Transactions on Industrial Electronics 55, 551-561 (2008)
- Michael B. Elowitz, Stanislas Leibier A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338 (2000)
- C. Chatelain A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Vijay Balasubramanian, Michael J. Berry A test of metabolically efficient coding in the retina Network: Computation in Neural Systems 13, 531-552 (2002)
- Haruhisa Okawa, Alapakkam P. Sampath, Simon B. Laughlin, Gordon L. Fain ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light Current Biology 18, 1917-1921 (2008)
- Robert G. Endres, Ned S. Wingreen Accuracy of direct gradient sensing by cell-surface receptors Progress in Biophysics and Molecular Biology 100, 33-39 (2009)
- J. B. Manneville, P. Bassereau, S. Ramaswamy, J. Prost Active membrane fluctuations studied by micropipet aspiration Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 64, 10 (2001)
- Pinar Korkmaz, Bilge E.S. Akgul, Krishna V. Palem, Lakshmi N. Chakrapani Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics Japanese Journal of Applied Physics, Part 1: Regular Papers and Short Notes and Review Papers 45, 3307-3316 (2006)
- David Meunier, Sophie Achard, Alexa Morcom, Ed Bullmore Age-related changes in modular organization of human brain functional networks NeuroImage 44, 715-723 (2009)
- Christopher J. Lee, Kris Irizarry Alternative splicing in the nervous system: An emerging source of diversity and regulation Biological Psychiatry 54, 771-776 (2003)
- Katsuhiko Sato An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation Journal of the Physical Society of Japan 71, 1065-1066 (2002)
- Ming Li, PMB Vitanyi An Introduction to Kolmogorov Complexity and Its Applications , (2008)
- Christopher A. Waudby, Glyn L. Devlin, Adriano Aguzzi, Michele Vendruscolo, Eugene M. Terentjev, Mark E. Welland, Christopher M. Dobson, Tuomas P.J. Knowles, Samuel I.A. Cohen An analytical solution to the kinetics of breakable filament assembly Science 326, 1533-1537 (2009)
- Donna G. Blackmond An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions Angewandte Chemie - International Edition 48, 386-390 (2009)
- F. Douarche, S. Ciliberto, A. Petrosyan, I. Rabbiosi An experimental test of the Jarzynski equality in a mechanical experiment Europhysics Letters 70, 593-599 (2005)
- Giulio Tononi An information integration theory of consciousness BMC Neuroscience 5, (2004)
- James Aspnes, Eric Ruppert An introduction to population protocols Middleware for Network Eccentric and Mobile Applications , 97-120 (2009)
- Ronen Berkovich, Joseph Klafter, Michael Urbakh Analyzing friction forces with the Jarzynski equality Journal of Physics Condensed Matter 20, (2008)
- Christoph Kaleta, Florian Centler, Peter Dittrich Analyzing molecular reaction networks: From pathways to chemical organizations Molecular Biotechnology 34, 117-123 (2006)
- Luca Guido Molinari Another proof of Gell-Mann and Low's theorem Journal of Mathematical Physics 48, (2007)
- Xuanhua Li, Donald Yeung Application-level correctness and its impact on fault tolerance Proceedings - International Symposium on High-Performance Computer Architecture , 181-192 (2007)
- A. Engel Asymptotics of work distributions in nonequilibrium systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80, (2009)
- R. J. Silverwood, B. L. De Stavola, T. J. Cole, D. A. Leon BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study International Journal of Obesity 33, 929-937 (2009)
- Gerald L. Hazelbauer, Joseph J. Falke, John S. Parkinson Bacterial chemoreceptors: high-performance signaling in networked arrays Trends in Biochemical Sciences 33, 9-19 (2008)
- Paul Maragakis, Felix Ritort, Carlos Bustamante, Martin Karplus, Gavin Crooks Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise Journal of Chemical Physics 129, (2008)
- Konrad P. Körding, Daniel M. Wolpert Bayesian integration in sensorimotor learning Nature 427, 244-247 (2004)
- Harald Oberhofer, Christoph Dellago, Phillip L. Geissler Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? Journal of Physical Chemistry B 109, 6902-6915 (2005)
- Dmitri B. Chklovskii Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) Vision Research 40, 1765-1773 (2000)
- Emmanuel Hermans Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors Pharmacology and Therapeutics 99, 25-44 (2003)
- Debasis Dan, A. M. Jayannavar Bona fide stochastic resonance: A view point from stochastic energetics Physica A: Statistical Mechanics and its Applications 345, 404-410 (2005)
- Yonghui Li, Yong Liu, Jun Li, Wen Qin, Kuncheng Li, Chunshui Yu, Tianzi Jiang Brain anatomical network and intelligence PLoS Computational Biology 5, (2009)
- S. R. Leigh Brain growth, life history, and cognition in primate and human evolution American Journal of Primatology 62, 139-164 (2004)
- Erwin Frey, Klaus Kroy Brownian motion: A paradigm of soft matter and biological physics Annalen der Physik (Leipzig) 14, 20-50 (2005)
- Peter Reimann Brownian motors: Noisy transport far from equilibrium Physics Report 361, 57-265 (2002)
- Arkadiusz Chworos, Isil Severcan, Alexey Y. Koyfman, Patrick Weinkam, Emin Oroudjev, Helen G. Hansma, Luc Jaeger Building programmable jigsaw puzzles with RNA Science 306, 2068-2072 (2004)
- Adelbert Ames CNS energy metabolism as related to function Brain Research Reviews 34, 42-68 (2000)
- Hugh R. Matthews, Johannes Reisert Calcium, the two-faced messenger of olfactory transduction and adaptation Current Opinion in Neurobiology 13, 469-475 (2003)
- Ioan Kosztin, Bogdan Barz, Lorant Janosi Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality Journal of Chemical Physics 124, (2006)
- Mingshan Li, Gerald L. Hazelbauer Cellular stoichiometry of the components of the chemotaxis signaling complex Journal of Bacteriology 186, 3687-3694 (2004)
- Gunnar Schotta, Anja Ebert, Veiko Krauss, Andreas Fischer, Jan Hoffmann, Stephen Rea, Thomas Jenuwein, Rainer Dorn, Gunter Reuter Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing EMBO Journal 21, 1121-1131 (2002)
- Volker Steuber, Wolfgang Mittmann, Freek E. Hoebeek, R. Angus Silver, Chris I. De Zeeuw, Michael Häusser, Erik De Schutter Cerebellar LTD and Pattern Recognition by Purkinje Cells Neuron 54, 121-136 (2007)
- John A. White, Jay T. Rubinstein, Alan R. Kay Channel noise in neurons Trends in Neurosciences 23, 131-137 (2000)
- Hongyun Wang Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms Journal of Physics Condensed Matter 17, (2005)
- Jeremy Gunawardena Chemical reaction network theory for in-silico biologists Bauer Center for Genomics Research Harvard University Cambridge MA 138, 1-26 (2003)
- Reinhard Lipowsky, Steffen Liepelt Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions Journal of Statistical Physics 130, 39-67 (2008)
- Schraga Schwartz, Eran Meshorer, Gil Ast Chromatin organization marks exon-intron structure Nature Structural and Molecular Biology 16, 990-995 (2009)
- N. Kumar, K. Vijay Kumar Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise EPL 86, (2009)
- Christopher Jarzynski, Daniel K. Wójcik Classical and quantum fluctuation theorems for heat exchange Physical Review Letters 92, (2004)
- L. Dinis, J. M.R. Parrondo, F. J. Cao Closed-loop control strategy with improved current for a flashing ratchet Europhysics Letters 71, 536-541 (2005)
- Elissa A. Hallem, John R. Carlson Coding of Odors by a Receptor Repertoire Cell 125, 143-160 (2006)
- Koji Maruyama, Franco Nori, Vlatko Vedral Colloquium: The physics of Maxwell's demon and information Reviews of Modern Physics 81, 1-23 (2009)
- Henrik Alle, Jörg R.P. Geiger Combined analog and action potential coding in hippocampal mossy fibers Science 311, 1290-1293 (2006)
- Simon B. Laughlin, Terrence J. Sejnowski Communication in neuronal networks Science 301, 1870-1874 (2003)
- Christopher Jarzynski Comparison of far-from-equilibrium work relations Comptes Rendus Physique 8, 495-506 (2007)
- Jordan Horowitz, Christopher Jarzynski Comparison of work fluctuation relations Journal of Statistical Mechanics: Theory and Experiment 2007, (2007)
- Jos Uffink Compendium of the Foundations of Classical Statistical Physics Philosophy of Physics , 923-1074 (2007)
- Chingren Lee, Jenq Kuen Lee, Ting Ting Hwang, Shi Chun Tsai Compiler optimization on instruction scheduling for low power Proceedings of the International Symposium on System Synthesis 2000-January, 55-60 (2000)
- Carl M. Bender, Dorje C. Brody, Hugh F. Jones Complex Extension of Quantum Mechanics Physical Review Letters 89, (2002)
- Pablo Achard, Erik De Schutter Complex parameter landscape for a complex neuron model PLoS Computational Biology 2, 0794-0804 (2006)
- Dana Angluin, James Aspnes, Zoë Diamadi, Michael J. Fischer, René Peralta Computation in networks of passively mobile finite-state sensors Distributed Computing 18, 235-253 (2006)
- David Soloveichik, Matthew Cook, Erik Winfree, Jehoshua Bruck Computation with finite stochastic chemical reaction networks Natural Computing 7, 615-633 (2008)
- Robert Penchovsky, Ronald R. Breaker Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes Nature Biotechnology 23, 1424-1433 (2005)
- Bradley Hall, Jay R. Hesselberth, Andrew D. Ellington Computational selection of nucleic acid biosensors via a slip structure model Biosensors and Bioelectronics 22, 1939-1947 (2007)
- Vincent Degos, Thomas Lescot, Abderrezak Zouaoui, Harold Hermann, Françoise Préteux, Pierre Coriat, Louis Puybasset Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury Anesthesia and Analgesia 103, 1229-1236 (2006)
- Holger Then, Andreas Engel Computing the optimal protocol for finite-time processes in stochastic thermodynamics Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 77, (2008)
- T. A.J. Duke, N. Le Novère, D. Bray Conformational spread in a ring of proteins: A stochastic approach to allostery Journal of Molecular Biology 308, 541-553 (2001)
- Giulio Tononi Consciousness as integrated information: A provisional manifesto Biological Bulletin 215, 216-242 (2008)
- Jongmin Kim, Kristin S. White, Erik Winfree Construction of an in vitro bistable circuit from synthetic transcriptional switches Molecular Systems Biology 2, (2006)
- David Yu Zhang, Erik Winfree Control of DNA strand displacement kinetics using toehold exchange Journal of the American Chemical Society 131, 17303-17314 (2009)
- Jeanne Morinière, Sophie Rousseaux, Ulrich Steuerwald, Montserrat Soler-López, Sandrine Curtet, Anne Laure Vitte, Jérme Govin, Jonathan Gaucher, Karin Sadoul, Darren J. Hart, Jeroen Krijgsveld, Saadi Khochbin, Christoph W. Müller, Carlo Petosa Cooperative binding of two acetylation marks on a histone tail by a single bromodomain Nature 461, 664-668 (2009)
- Johann Elbaz, Michal Moshe, Bella Shlyahovsky, Itamar Willner Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors Chemistry - A European Journal 15, 3411-3418 (2009)
- William Bialek, Sima Setayeshgar Cooperativity, sensitivity, and noise in biochemical signaling Physical Review Letters 100, (2008)
- Farzad Parvaresh, Alexander Vardy Correcting errors beyond the Guruswami-Sudan radius in polynomial time Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS 2005, 285-294 (2005)
- Karin Isler, Carel van Schaik Costs of encephalization: the energy trade-off hypothesis tested on birds Journal of Human Evolution 51, 228-243 (2006)
- Alexander M. Berezhkovskii, Sergey M. Bezrukov Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport Physical Review Letters 100, (2008)
- Dazhong Xu, Jingxiang Bai, Qing Duan, Max Costa, Wei Dai Covalent modifications of histones during mitosis and meiosis Cell Cycle 8, 3688-3694 (2009)
- Mesfin Asfaw, Mulugeta Bekele Current, maximum power and optimized efficiency of a Brownian heat engine European Physical Journal B 38, 457-461 (2004)
- David Soloveichik, Georg Seelig, Erik Winfree DNA as a universal substrate for chemical kinetics (Extended Abstract) Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5347 LNCS, 57-69 (2009)
- Wojciech Hubert Zurek Decoherence, einselection, and the quantum origins of the classical Reviews of Modern Physics 75, 715-775 (2003)
- Melvin A. Breuer, Sandeep K. Gupta, T. M. Mak Defect and error tolerance in the presence of massive numbers of defects IEEE Design and Test of Computers 21, 216-227 (2004)
- Wenzhe Ma, Ala Trusina, Hana El-Samad, Wendell A. Lim, Chao Tang Defining Network Topologies that Can Achieve Biochemical Adaptation Cell 138, 760-773 (2009)
- Sonja J. Prohaska, Christian V. Forst, David C. Krakauer, Peter Stadler Defining genes: A computational framework Theory in Biosciences 128, 165-170 (2009)
- M. Christopher Dean, Victoria S. Lucas Dental and skeletal growth in early fossil hominins Annals of Human Biology 36, 545-561 (2009)
- Jeffrey J. Tabor, Matthew Levy, Andrew D. Ellington Deoxyribozymes that recode sequence information Nucleic Acids Research 34, 2166-2172 (2006)
- Kirsten Martens, Eric Bertin, Michel Droz Dependence of the fluctuation-Dissipation temperature on the choice of observable Physical Review Letters 103, (2009)
- Valentine Kabanets, Russell Impagliazzo Derandomizing polynomial identity tests means proving circuit lower bounds Computational Complexity 13, 1-46 (2004)
- Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik Design principles of a bacterial signalling network Nature 438, 504-507 (2005)
- Kaustubh Supekar, Mark Musen, Vinod Menon Development of large-scale functional brain networks in children PLoS Biology 7, (2009)
- Jennifer L. Fish, Charles A. Lockwood Dietary constraints on encephalization in primates American Journal of Physical Anthropology 120, 171-181 (2003)
- Jeroen S. Van Zon, Marco J. Morelli, Sorin Tǎnase-Nicola, Pieter Rein ten Wolde Diffusion of transcription factors can drastically enhance the noise in gene expression Biophysical Journal 91, 4350-4367 (2006)
- Christoph Adami Digital genetics: Unravelling the genetic basis of evolution Nature Reviews Genetics 7, 109-118 (2006)
- Troy Lee, Adi Shraibman Disjointness is hard in the multiparty number-on-the-forehead model Computational Complexity 18, 309-336 (2009)
- Yong Liu, Meng Liang, Yuan Zhou, Yong He, Yihui Hao, Ming Song, Chunshui Yu, Haihong Liu, Zhening Liu, Tianzi Jiang Disrupted small-world networks in schizophrenia Brain 131, 945-961 (2008)
- T. Speck, Udo Seifert Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers European Physical Journal B 43, 521-527 (2005)
- S. Vaikuntanathan, C. Jarzynski Dissipation and lag in irreversible processes EPL 87, (2009)
- Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome Nature Genetics 39, 311-318 (2007)
- Qi Wang, Christopher Lee Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase PLoS ONE 2, (2007)
- Thomas Speck, Udo Seifert Distribution of work in isothermal nonequilibrium processes Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 70, 4 (2004)
- Anders M. Lindroth, David Shultis, Zuzana Jasencakova, Jörg Fuchs, Lianna Johnson, Daniel Schubert, Debasis Patnaik, Sriharsa Pradhan, Justin Goodrich, Ingo Schubert, Thomas Jenuwein, Sepideh Khorasanizadeh, Steven E. Jacobsen Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 EMBO Journal 23, 4286-4296 (2004)
- A. Mossa, M. Manosas, N. Forns, J. M. Huguet, F. Ritort Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes Journal of Statistical Mechanics: Theory and Experiment 2009, (2009)
- M. Manosas, A. Mossa, N. Forns, J. M. Huguet, F. Ritort Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation Journal of Statistical Mechanics: Theory and Experiment 2009, (2009)
- Christopher J. Honey, Olaf Sporns Dynamical consequences of lesions in cortical networks Human Brain Mapping 29, 802-809 (2008)
- P. A. Robinson, J. A. Henderson, E. Matar, P. Riley, R. T. Gray Dynamical reconnection and stability constraints on cortical network architecture Physical Review Letters 103, (2009)
- Andrea Puglisi, Paolo Visco, Emmanuel Trizac, Frédéric Van Wijland Dynamics of a tracer granular particle as a nonequilibrium Markov process Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73, (2006)
- J. P. Onnela, A. Chakraborti, K. Kaski, J. Kertész, A. Kanto Dynamics of market correlations: Taxonomy and portfolio analysis Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 68, (2003)
- Yossi Rubner, Carlo Tomasi, Leonidas J. Guibas Earth mover's distance as a metric for image retrieval International Journal of Computer Vision 40, 99-121 (2000)
- Valentine Kabanets Easiness Assumptions and Hardness Tests: Trading Time for Zero Error Journal of Computer and System Sciences 63, 236-252 (2001)
- Davide Loi, Stefano Mossa, Leticia F. Cugliandolo Effective temperature of active matter Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 77, (2008)
- Corey S. O'Hern, Andrea J. Liu, Sidney R. Nagel Effective temperatures in driven systems: Static versus time-dependent relations Physical Review Letters 93, (2004)
- Sophie Achard, Ed Bullmore Efficiency and cost of economical brain functional networks PLoS Computational Biology 3, 0174-0183 (2007)
- Hidetsugu Sakaguchi Efficiency and fluctuation in tight-coupling model of molecular motor Journal of the Physical Society of Japan 75, (2006)
- Z. C. Tu Efficiency at maximum power of Feynman's ratchet as a heat engine Journal of Physics A: Mathematical and Theoretical 41, (2008)
- T. Schmiedl, Udo Seifert Efficiency at maximum power: An analytically solvable model for stochastic heat engines EPL 81, (2008)
- Min Qian, Xuejuan Zhang, R. J. Wilson, Jianfeng Feng Efficiency of Brownian motors in terms of entropy production rate EPL 84, (2008)
- T. Schmiedl, Udo Seifert Efficiency of molecular motors at maximum power EPL 83, (2008)
- Vito Latora, Massimo Marchiori Efficient behavior of small-world networks Physical Review Letters 87, 198701-1-198701-4 (2001)
- Harald Oberhofer, Christoph Dellago Efficient extraction of free energy profiles from nonequilibrium experiments Journal of Computational Chemistry 30, 1726-1736 (2009)
- Ludovic Berthier Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids Physical Review Letters 98, (2007)
- V. Blickle, T. Speck, C. Lutz, C. Bechinger, Udo Seifert Einstein relation generalized to nonequilibrium Physical Review Letters 98, (2007)
- Thomas M. Cover, Joy A. Thomas Elements of Information Theory Elements of Information Theory , 1-748 (2005)
- Laszlo B. Kish End of Moore's law: Thermal (noise) death of integration in micro and nano electronics Physics Letters, Section A: General, Atomic and Solid State Physics 305, 144-149 (2002)
- Robert G. Shulman, Douglas L. Rothman, Kevin L. Behar, Fahmeed Hyder Energetic basis of brain activity: Implications for neuroimaging Trends in Neurosciences 27, 489-495 (2004)
- Krishna V. Palem Energy Aware Computing Through Probabilistic Switching: A Study of Limits IEEE Transactions on Computers 54, 1123-1137 (2005)
- S. B. Laughlin Energy as a constraint on the coding and processing of sensory information Current Opinion in Neurobiology 11, 475-480 (2001)
- Krishna V. Palem Energy aware computing through probabilistic switching: A study of limits IEEE Transactions on Computers 54, 1123-1137 (2005)
- Reinhard Lipowsky, Steffen Liepelt, Angelo Valleriani Energy conversion by molecular motors coupled to nucleotide hydrolysis Journal of Statistical Physics 135, 951-975 (2009)
- Takahiro Harada, Shin Ichi Sasa Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73, (2006)
- Peter B. Detwiler, Sharad Ramanathan, Anirvan Sengupta, Boris I. Shraiman Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina Biophysical Journal 79, 2801-2817 (2000)
- Vandana Sharma, Yoko Nomura, Yohei Yokobayashi Engineering complex riboswitch regulation by dual genetic selection Journal of the American Chemical Society 130, 16310-16315 (2008)
- Marco Baiesi, Christian Maes Enstrophy dissipation in two-dimensional turbulence Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 72, (2005)
- T. Gilbert Entropy fluctuations in shell models of turbulence Europhysics Letters 67, 172-178 (2004)
- Udo Seifert Entropy production along a stochastic trajectory and an integral fluctuation theorem Physical Review Letters 95, (2005)
- Tie Jun Xiao, Zhonghuai Hou, Houwen Xin Entropy production and fluctuation theorem along a stochastic limit cycle Journal of Chemical Physics 129, (2008)
- Tim Schmiedl, Thomas Speck, Udo Seifert Entropy production for mechanically or chemically driven biomolecules Journal of Statistical Physics 128, 77-93 (2007)
- Arnab Saha, Sourabh Lahiri, A. M. Jayannavar Entropy production theorems and some consequences Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80, (2009)
- Wojciech Hubert Zurek Environment-Assisted Invariance, Entanglement, and Probabilities in Quantum Physics Physical Review Letters 90, 4 (2003)
- Georg Seelig, David Soloveichik, David Yu Zhang, Erik Winfree Enzyme-free nucleic acid logic circuits Science 314, 1585-1588 (2006)
- T. Hondou Equation of state in a small system: Violation of an assumption of Maxwell's demon EPL 80, (2007)
- Jan Liphardt, Sophie Dumont, Steven B. Smith, Ignacio Tinoco, Carlos Bustamante Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality Science 296, 1832-1835 (2002)
- C. Del Negro, J. M. Edeline Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) European Journal of Neuroscience 14, 1752 (2001)
- Suriyanarayanan Vaikuntanathan, Christopher Jarzynski Escorted free energy simulations: Improving convergence by reducing dissipation Physical Review Letters 100, (2008)
- F. Douarche, S. Ciliberto, A. Petrosyan Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models Journal of Statistical Mechanics: Theory and Experiment , 287-304 (2005)
- Raphaël Chetrite, Krzysztof Gawędzki Eulerian and lagrangian pictures of non-equilibrium diffusions Journal of Statistical Physics 137, 890-916 (2009)
- Gerhard Roth, Ursula Dicke Evolution of the brain and intelligence Trends in Cognitive Sciences 9, 250-257 (2005)
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