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From Thermodynamics of Computation
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List of results
- Probing molecular free energy landscapes by periodic loading + (Oliver Braun)
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits + (Danielle S. Bassett)
- Functional brain network efficiency predicts intelligence + (Nicolas Langer)
- Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice + (Nixon M. Abraham)
- Resolution of nested neuronal representations can be exponential in the number of neurons + (Alexander Mathis)
- How much non-coding DNA do eukaryotes require? + (Sebastian E. Ahnert)
- Computational selection of nucleic acid biosensors via a slip structure model + (Bradley Hall)
- Deoxyribozymes that recode sequence information + (Jeffrey J. Tabor)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain + (Andrew J. Bannister)
- A DNA-fuelled molecular machine made of DNA + (Bernard Yurke)
- Programmable energy landscapes for kinetic control of DNA strand displacement + (Thomas E. Ouldridge)
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums + (Anthony J. Genot)
- Proactive Control of Approximate Programs + (Xin Sui)
- Optimal Prediction by Cellular Signaling Networks + (Nils B. Becker)
- Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host + (Winston Timp)
- Programmable chemical controllers made from DNA + (Yuan Jyue Chen)
- Modular verification of chemical reaction network encodings via serializability analysis + (Matthew R. Lakin)
- Visual DSD: A design and analysis tool for DNA strand displacement systems + (Matthew R. Lakin)
- Modelling, simulating and verifying Turing-powerful strand displacement systems + (Matthew R. Lakin)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Good practices in free-energy calculations + (Andrew Pohorille)
- Disrupted axonal fiber connectivity in schizophrenia + (Andrew Zalesky)
- Schizophrenia, neuroimaging and connectomics + (Alex Fornito)
- Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees + (Anders Dessmark)
- Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees + (Andrzej Proskurowski)
- Thermodynamics of trajectories and local fluctuation theorems for harmonic quantum networks + (Simon Pigeon)
- The lac repressor displays facilitated diffusion in living cells + (Petter Hammar)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Energy conversion by molecular motors coupled to nucleotide hydrolysis + (Reinhard Lipowsky)
- Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints + (Anirikh Chakrabarti)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina + (Peter B. Detwiler)
- Energy allocation between brain and body during ontogenetic development + (Britta Kubera)
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing + (Gunnar Schotta)
- Cube v4: From performance report explorer to performance analysis tool + (Pavel Saviankou)
- The microvascular system of the striate and extrastriate visual cortex of the macaque + (Bruno Weber)
- Calcium signalling and regulation in olfactory neurons + (Anna Menini)
- Reachability bounds for chemical reaction networks and strand displacement systems + (Anne Condon)
- Less haste, less waste: On recycling and its limits in strand displacement systems + (Anne Condon)
- Revision of Dietary Reference Intakes for energy in preschool-age children + (Nancy F. Butte)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- The 'independent components' of natural scenes are edge filters + (Anthony J. Bell)
- Thermodynamics of prediction + (Susanne Still)
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums + (Anthony J. Genot)
- The connection between logical and thermodynamic irreversibility + (James Ladyman)
- Split decision: What happens to nucleosomes during DNA replication? + (Anthony T. Annunziato)
- Small-world properties of nonlinear brain activity in schizophrenia + (Mikail Rubinov)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)