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List of results

• Computing the optimal protocol for finite-time processes in stochastic thermodynamics  + (Holger Then)
• Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation  + (Hong Qian)
• Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces  + (Wei Min)
• Fluctuation theorems for a molecular refrigerator  + (Kyung Hyuk Kim)
• Pumped biochemical reactions, nonequilibrium circulation, and stochastic resonance  + (Hong Qian)
• Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes  + (Hong Qian)
• Nonequilibrium steady-state circulation and heat dissipation functional  + (Hong Qian)
• Physical origins of entropy production, free energy dissipation, and their mathematical representations  + (Hao Ge)
• An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle  + (Hong Qian)
• A simple theory of motor protein kinetics and energetics. II  + (Hong Qian)
• Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations  + (Hong Qian)
• Relative entropy: Free energy associated with equilibrium fluctuations and nonequilibrium deviations  + (Hong Qian)
• Reducing Intrinsic Biochemical Noise in Cells and Its Thermodynamic Limit  + (Hong Qian)
• Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch  + (Hong Qian)
• Stoichiometric network theory for nonequilibrium biochemical systems  + (Hong Qian)
• Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics  + (Hao Ge)
• Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction  + (Hong Qian)
• Thermodynamic constraints for biochemical networks  + (Daniel A. Beard)
• Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium  + (Hong Qian)
• Nonequilibrium thermodynamic formalism of nonlinear chemical reaction systems with Waage-Guldberg's law of mass action  + (Hao Ge)
• Uncovering intrinsic modular organization of spontaneous brain activity in humans  + (Yong He)
• Transforming probabilities with combinational logic  + (Weikang Qian)
• The Stokes efficiency for molecular motors and its applications  + (Hongyun Wang)
• Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms  + (Hongyun Wang)
• Entropy production and fluctuation theorem along a stochastic limit cycle  + (Tie Jun Xiao)
• Stochastic thermodynamics in mesoscopic chemical oscillation systems  + (Tiejun Xiao)

• Chemotaxis in Escherichia coli analysed by three-dimensional tracking  + (Howard C. Berg)
• Physical Responses of Bacterial Chemoreceptors  + (Howard C. Berg)
• A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli  + (Howard C. Berg)

• Stochastic arithmetic implementations of neural networks with in situ learning  + (Jeffrey A. Dickson)
• Stochastic neural computation I: Computational elements  + (Bradley D. Brown)
• Asynchronous computation with molecular reactions  + (Hua Jiang)
• Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid  + (Huan Xiang Zhou)
• Complex Extension of Quantum Mechanics  + (Carl M. Bender)
• Calcium, the two-faced messenger of olfactory transduction and adaptation  + (Hugh R. Matthews)
• TrxG and PcG proteins but not methylated histones remain associated with DNA through replication  + (Svetlana Petruk)
• The large deviation approach to statistical mechanics  + (Hugo Touchette)
• Information-theoretic approach to the study of control systems  + (Hugo Touchette)
• Exciton-polariton Bose-Einstein condensation  + (Hui Deng)
• A Map of the Interactome Network of the Metazoan C. elegans  + (Siming Li)
• A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms  + (Da Zhang)
• Histone modifications at human enhancers reflect global cell-type-specific gene expression  + (Nathaniel D. Heintzman)
• A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling  + (Kevin J. Nowka)
• ERSA: Error resilient system architecture for probabilistic applications  + (Hyungmin Cho)
• Tolerating Soft Errors in Processor Cores Using CLEAR (Cross-Layer Exploration for Architecting Resilience)  + (Eric Cheng)
• Universal features in the energetics of symmetry breaking  + (É Roldán)
• Jarzynski equality for the Jepsen gas  + (I. Bena)
• Quantum entropy production as a measure of irreversibility  + (I. Callens)
• Invariant visual representation by single neurons in the human brain  + (R. Quian Quiroga)
• The Berry phase and the pump flux in stochastic chemical kinetics  + (N. A. Sinitsyn)
• Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state  + (A. Gomez-Marin)
• An experimental test of the Jarzynski equality in a mechanical experiment  + (F. Douarche)
• Experimental implementation of a nonthermalizing quantum thermometer  + (C. Raitz)