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From Thermodynamics of Computation
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List of results
- Information Theory, Inference and Learning Algorithms +
- Molecular computation of solutions to combinatorial problems +
- DNA as a universal substrate for chemical kinetics (Extended Abstract) +
- The cell cycle switch computes approximate majority +
- The computationally complete ant colony: Global coordination in a system with no hierarchy +
- Programmable and autonomous computing machine made of biomolecules +
- Two-Domain DNA Strand Displacement +
- The second wave of synthetic biology: From modules to systems +
- Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors +
- Triggered amplification by hybridization chain reaction +
- Dynamic DNA nanotechnology using strand-displacement reactions +
- Morphisms of reaction networks that couple structure to function +
- Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold +
- Programmable chemical controllers made from DNA +
- Modelling amorphous computations with transcription networks +
- Enzyme-free nucleic acid dynamical systems +
- Breaking DES Using a Molecular Computer +
- Functional nucleic acid sensors +
- Deterministic function computation with chemical reaction networks +
- Exponential growth by cross-catalytic cleavage of deoxyribozymogens. +
- A simple population protocol for fast robust approximate majority +
- Programmable ligand-controlled riboregulators of eukaryotic gene expression +
- Modular verification of chemical reaction network encodings via serializability analysis +
- Verifying chemical reaction network implementations: A pathway decomposition approach +
- Computational selection of nucleic acid biosensors via a slip structure model +
- Construction of an in vitro bistable circuit from synthetic transcriptional switches +
- Leaderless deterministic chemical reaction networks +
- Visual DSD: A design and analysis tool for DNA strand displacement systems +
- Engineering complex riboswitch regulation by dual genetic selection +
- Building programmable jigsaw puzzles with RNA +
- A DNA-fuelled molecular machine made of DNA +
- Solution of a 20-variable 3-SAT problem on a DNA computer +
- CURRENT OPINION IN STRUCTURAL BIOLOGY +
- Engineering precision RNA molecular switches +
- Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation +
- Algorithmic Self-Assembly of DNA Sierpinski Triangles +
- Cooperative binding of effectors by an allosteric ribozyme. +
- Control of DNA strand displacement kinetics using toehold exchange +
- Extinction in neutrally stable stochastic Lotka-Volterra models +
- Efficient turing-universal computation with DNA polymers +
- DNA COMPUTING +
- Stably computable predicates are semilinear +
- Amorphous computing +
- Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes +
- Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice +
- Deoxyribozymes that recode sequence information +
- A general purpose RNA-cleaving DNA enzyme +
- General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening +
- Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach +
- Analog Computation by DNA Strand Displacement Circuits +