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From Thermodynamics of Computation
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List of results
- Thermodynamics of natural selection III: Landauer’s principle in computation and chemistry +
- Thermodynamics of Computational Copying in Biochemical Systems +
- An intermediate level of abstraction for computational systems chemistry +
- Deterministic Function Computation with Chemical Reaction Network +
- Chemical Reaction Networks for Computing Polynomials +
- Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach +
- Thermodynamics of natural selection II: Chemical Carnot cycles +
- Thermodynamics of natural selection I: Energy flow and the limits on organization +
- Less haste, less waste: On recycling and its limits in strand displacement systems +
- The topology of energy hypersurfaces III. The fundamental group of reaction mechanisms on potential energy hypersurfaces +
- An introduction to population protocols +
- Computational design of nucleic acid feedback control circuits +
- Synchronizing genetic relaxation oscillators by intercell signaling +
- Programmability of Chemical Reaction Networks +
- General mass action kinetics +
- A synthetic oscillatory network of transcriptional regulators +
- Programmable energy landscapes for kinetic control of DNA strand displacement +
- Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? +
- Ecology, the Ascendent Perspective +
- TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY XII +
- Synthetic in vitro transcriptional oscillators +
- Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees +
- Programming DNA tube circumferences +
- Reducibility among combinatorial problems +
- Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete +
- Reciprocal relations in irreversible processes. I. +
- Computation in networks of passively mobile finite-state sensors +
- Towards programming languages for genetic engineering of living cells. +
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator +
- Digital and analog gene circuits for biotechnology +
- An efficient graph theory based method to identify every minimal reaction set in a metabolic network +
- Fifty years of the VSEPR model +
- A (sub)graph isomorphism algorithm for matching large graphs +
- On a hypothetical generational relationship between HCN and constituents of the reductive citric acid cycle +
- Scaling up digital circuit computation with DNA strand displacement cascades. +
- Article for analog vector algebra computation +
- Reachability bounds for chemical reaction networks and strand displacement systems +
- Predator-prey molecular ecosystems. +
- Max Horn SAT and the minimum cut problem in directed hypergraphs +
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums +
- Chemical implementation of neural networks and Turing machines +
- Robust stochastic chemical reaction networks and bounded tau-leaping. +
- Stochastic Simulation of Chemical Kinetics +
- Synthetic analog computation in living cells +
- Asynchronous computation with molecular reactions +
- Rate-independent Computation in Continuous Chemical Reaction Networks +
- Programming biomolecular self-assembly pathways +
- The Activated Complex in Chemical Reactions +
- Analog synthetic biology +
- Fast computation by population protocols with a leader +