Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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From Thermodynamics of Computation

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A (sub)graph isomorphism algorithm for matching large graphs +
Luigi P. Cordella  +, Pasquale Foggia  +, Carlo Sansone  +, …
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling +
Kevin J. Nowka  +, Gary D. Carpenter  +, Eric W. MacDonald  +, …
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory +
David J. Katz  +, T. Matthew Edwards  +, Valerie Reinke  +, …
A Cost / Speed / Reliability Trade-off in Erasing a Bit +
Manoj Gopalkrishnan  +
A DNA-fuelled molecular machine made of DNA +
Bernard Yurke  +, Andrew J. Turberfield  +, Allen P. Mills  +, …
A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes +
Andre Cardoso Barato  +, Raphaël Chetrite  +, Haye Hinrichsen  +, …
A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering +
Andrea Arcuri  +, Lionel Briand  +
A Map of the Interactome Network of the Metazoan C. elegans +
Siming Li  +, Christopher M. Armstrong  +, Nicolas Bertin  +, …
A Nonequilibrium Extension of the Clausius Heat Theorem +
Christian Maes  +, Karel Netočný  +
A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes +
...  +
A Simple Histone Code Opens Many Paths to Epigenetics +
Kim Sneppen  +, Ian B. Dodd  +
A Simple Model of Optimal Population Coding for Sensory Systems +
Eizaburo Doi  +, Michael S. Lewicki  +
A bound particle coupled to two thermostats +
Hans C. Fogedby  +, Alberto Imparato  +
A cost/speed/reliability tradeoff to erasing +
Manoj Gopalkrishnan  +
A fast and elitist multiobjective genetic algorithm: NSGA-II +
Kalyanmoy Deb  +, Amrit Pratap  +, Sameer Agarwal  +, …
A field-theoretic approach to non-equilibrium work identities +
Kirone Mallick  +, Moshe Moshe  +, Henri Orland  +
A fluctuation theorem for currents and non-linear response coefficients +
David Andrieux  +, Pierre Gaspard  +
A fluctuation theorem for non-equilibrium relaxational systems driven by external forces +
Francesco Zamponi  +, Federico Bonetto  +, Leticia F. Cugliandolo  +, …
A general framework for non-equilibrium phenomena: The master equation and its formal consequences +
Bernard Gaveau  +, L. S. Schulman  +
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions +
Daniel T. Gillespie  +
A general model for ontogenetic growth +
Geoffrey B. West  +, James H. Brown  +, Brian J. Enquist  +
A general model for the structure and allometry of plant vascular systems +
Geoffrey B. West  +, James H. Brown  +, Brian J. Enquist  +
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation +
Stefan Schuster  +, Ronny Schuster  +
A generalized integral fluctuation theorem for general jump processes +
Fei Liu  +, Yu Pin Luo  +, Ming Chang Huang  +, …
A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks +
Shodhan Rao  +, Arjan van der Schaft  +, Bayu Jayawardhana  +
A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb +
Ana Raquel Pengelly  +, Ömer Copur  +, Herbert Jäckle  +, …
A master equation description of local fluctuations +
M. Malek-Mansour  +, G. Nicolis  +
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium +
A. E. Allahverdyan  +, Th M. Nieuwenhuizen  +
A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy +
David M. Cohen  +, Jingna Wei  +, E. O'Brian Smith  +, …
A model for transmission of the H3K27me3 epigenetic mark +
Klaus H. Hansen  +, Adrian P. Bracken  +, Diego Pasini  +, …
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli +
Thomas S. Shimizu  +, Yuhai Tu  +, Howard C. Berg  +
A molecular information ratchet +
Viviana Serreli  +, Chin Fa Lee  +, Euan R. Kay  +, …
A new notation for quantum mechanics +
P. A.M. Dirac  +
A new polynomial-time algorithm for linear programming +
N. Karmarkar  +
A note on monte carlo primality tests and algorithmic information theory +
Gregory J. Chaitin  +, Jacob T. Schwartz  +
A possible classification of nonequilibrium steady states +
B. Schmittmann  +, R. K.P. Zia  +
A quantitative analysis of sniffing strategies in rats performing odor detection tasks +
Steven L. Youngentob  +, Maxwell M. Mozell  +, Paul R. Sheehe  +, …
A quantitative comparison of sRNA-based and protein-based gene regulation +
Pankaj Mehta  +, Sidhartha Goyal  +, Ned S. Wingreen  +
A quantitative estimation of the global translational activity in logarithmically growing yeast cells +
Tobias von der Haar  +
A rigorous derivation of the chemical master equation +
Daniel T. Gillespie  +
A simple coding procedure enhances a neuron’s information capacity +
Simon Laughlin  +
A simple population protocol for fast robust approximate majority +
Dana Angluin  +, James Aspnes  +, David Eisenstat  +
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions +
Marcus Kaiser  +, Claus C. Hilgetag  +, Arjen Van Ooyen  +
A simple theory of motor protein kinetics and energetics. II +
Hong Qian  +
A small world of neuronal synchrony +
Shan Yu  +, Debin Huang  +, Wolf Singer  +, …
A spectral transform approach to stochastic circuits +
Armin Alaghi  +, John P. Hayes  +
A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic +
Peng Li  +, Weikang Qian  +, David J. Lilja  +
A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms +
Da Zhang  +, Hui Li  +
A synthetic oscillatory network of transcriptional regulators +
Michael B. Elowitz  +, Stanislas Leibier  +
A systems perspective on early olfactory coding +
Gilles Laurent  +
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