Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

Property:Volume

From Thermodynamics of Computation

This is a property of type Text.

previous 2502050100250500next 250
Showing 250 pages using this property.
M
Making molecular machines work +
1  +
T
The human connectome: A structural description of the human brain +
1  +
S
Soft computing: the convergence of emerging reasoning technologies +
1  +
I
Information theory in molecular biology +
1  +
W
Why do female primates have such long lifespans and so few babies? or Life in the slow lane +
1  +
T
The energy expansions of evolution +
1  +
D
Distributed hierarchical processing in the primate cerebral cortex +
1  +
N
Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity +
10  +
E
Experience-dependent rescaling of entorhinal grids +
10  +
U
Universal features in the energetics of symmetry breaking +
10  +
T
Thermodynamic Costs of Information Processing in Sensory Adaptation +
10  +
E
Evolutionary tradeoffs in cellular composition across diverse bacteria +
10  +
A
A model for transmission of the H3K27me3 epigenetic mark +
10  +
P
Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease +
10  +
T
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network +
10  +
A
A Simple Model of Optimal Population Coding for Sensory Systems +
10  +
S
Symbiotic relationship between brain structure and dynamics +
10  +
N
Nucleosome positioning and gene regulation: Advances through genomics +
10  +
T
The second wave of synthetic biology: From modules to systems +
10  +
The WUS homeobox-containing (WOX) protein family +
10  +
C
Chromatin proteins: Key responders to stress +
10  +
S
Strand algebras for DNA computing +
10  +
F
Failure of the work-hamiltonian connection for free-energy calculations +
100  +
R
Role of external flow and frame invariance in stochastic thermodynamics +
100  +
O
Optimized free energies from bidirectional single-molecule force spectroscopy +
100  +
R
Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states +
100  +
C
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport +
100  +
E
Escorted free energy simulations: Improving convergence by reducing dissipation +
100  +
R
Revision of Dietary Reference Intakes for energy in preschool-age children +
100  +
C
Cooperativity, sensitivity, and noise in biochemical signaling +
100  +
A
Accuracy of direct gradient sensing by cell-surface receptors +
100  +
R
Receptor noise and directional sensing in eukaryotic chemotaxis +
100  +
I
Invariant quantities in shear flow +
101  +
L
Length of time's arrow +
101  +
R
Realization of a feedback controlled flashing ratchet +
101  +
D
Differential Landauer's principle +
101  +
A
An autonomous and reversible Maxwell's demon +
101  +
M
Memory erasure in small systems +
102  +
Minimal energy cost for thermodynamic information processing: Measurement and information erasure +
102  +
Mutual information between input and output trajectories of biochemical networks +
102  +
F
Fluctuation theorem for arbitrary open quantum systems +
102  +
H
Heterogeneity and Efficiency in the Brain +
103  +
N
Nonequilibrium steady-state fluctuations in actively cooled resonators +
103  +
E
Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State +
103  +
D
Dynamical reconnection and stability constraints on cortical network architecture +
103  +
R
Role of spatial averaging in the precision of gene expression patterns +
103  +
C
Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury +
103  +
M
Maximum likelihood and the single receptor +
103  +
G
Generalized fluctuation-dissipation theorem for steady-state systems +
103  +
D
Dependence of the fluctuation-Dissipation temperature on the choice of observable +
103  +
N
Nonequilibrium energetics of a single F1-ATPase molecule +
104  +
E
Entropy production of cyclic population dynamics +
104  +
F
Fluctuation theorem applied to F1-ATPase +
104  +
G
Generalized einstein or green-kubo relations for active biomolecular transport +
104  +
H
Heat conduction in a three dimensional anharmonic crystal +
104  +
O
On r- and K-Selection +
104  +
G
Generalized Jarzynski equality under nonequilibrium feedback control +
104  +
L
Limits of sensing temporal concentration changes by single cells +
104  +
C
Cooling classical particles with a microcanonical szilard engine +
104  +
S
Stochastic thermodynamics and sustainable efficiency in work production +
105  +
N
Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases +
105  +
F
Fluctuation relations and rare realizations of transport observables +
105  +
O
Optical realization of relativistic non-Hermitian quantum mechanics +
105  +
On the energetics of information exchange +
105  +
S
Synthetic mechanochemical molecular swimmer +
105  +
T
Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction +
105  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
106  +
E
Efficiency of autonomous soft nanomachines at maximum power +
106  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem +
106  +
O
Optimal protocols and optimal transport in stochastic thermodynamics +
106  +
H
Hydrodynamics and the fluctuation theorem +
106  +
Heat fluctuations in a nonequilibrium bath +
106  +
E
Effective temperature of red-blood-cell membrane fluctuations +
106  +
S
Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle +
106  +
T
Thermodynamic bounds on efficiency for systems with broken time-reversal symmetry +
106  +
Q
Quantum szilard engine +
106  +
T
The berg-purcell limit revisited +
106  +
I
Improving free-energy estimates from unidirectional work measurements: Theory and experiment +
107  +
Injected power fluctuations in Langevin equation +
107  +
G
Geometric effects on complex network structure in the cortex +
107  +
D
Dynamics of cooperativity in chemical sensing among cell-surface receptors +
107  +
E
Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit +
107  +
N
Nonequilibrium thermodynamics of stochastic systems with odd and even variables +
108  +
F
Fluctuation theorems for an asymmetric rotor in a granular gas +
108  +
I
Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states +
108  +
S
Stochastic energetics for non-Gaussian processes +
108  +
F
Fluctuation-preserving coarse graining for biochemical systems +
108  +
R
Role of hidden slow degrees of freedom in the fluctuation theorem +
108  +
Q
Quantum Measurement Bounds beyond the Uncertainty Relations +
108  +
T
Thermodynamics of genuine nonequilibrium states under feedback control +
108  +
The mesoscopic dynamics of thermodynamic systems +
109  +
B
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? +
109  +
R
Resolution of nested neuronal representations can be exponential in the number of neurons +
109  +
F
Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics +
109  +
T
Thermodynamics of prediction +
109  +
F
Fundamental limits on sensing chemical concentrations with linear biochemical networks +
109  +
Fundamental aspects of protein - Protein association kinetics +
109  +
Functional nucleic acid sensors +
109  +
T
Thermodynamics of information +
11  +
E
Energy as a constraint on the coding and processing of sensory information +
11  +
T
The Szilard engine revisited: Entropy, macroscopic randomness, and symmetry breaking phase transitions +
11  +
R
RAS oncogenes: Weaving a tumorigenic web +
11  +
A
An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle +
11  +
C
Chromatin structure and the inheritance of epigenetic information +
11  +
E
Experimental test of the quantum Jarzynski equality with a trapped-ion system +
11  +
C
Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation +
11  +
D
Dissipation-error tradeoff in proofreading +
11  +
M
Microbial life under extreme energy limitation +
11  +
T
Tight estimates for eigenvalues of regular graphs +
11  +
Q
Quantum mechanics: No more fields +
11  +
M
Macromolecular crowding: An important but neglected aspect of the intracellular environment +
11  +
O
Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations +
110  +
T
Thermodynamics of a physical model implementing a Maxwell demon +
110  +
K
Kinetic versus energetic discrimination in biological copying +
110  +
C
Chemical sensing by nonequilibrium cooperative receptors +
110  +
M
Multidimensional potentials of mean force from biased experiments along a single coordinate +
111  +
Maxwell's refrigerator: An exactly solvable model +
111  +
I
Information thermodynamics on causal networks +
111  +
H
Heat engine driven by purely quantum information +
111  +
I
Imitating chemical motors with optimal information motors +
111  +
S
Self-organization and entropy reduction in a living cell +
111  +
Second law of thermodynamics with discrete quantum feedback control +
1110  +
N
Nanoscale heat engine beyond the carnot limit +
112  +
U
Unifying three perspectives on information processing in stochastic thermodynamics +
112  +
T
The brain's default network: Anatomy, function, and relevance to disease +
1124  +
The neural correlates of consciousness: An update +
1124  +
The mechanics and fluctuation spectrum of active gels +
113  +
E
Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon +
113  +
Energy dissipation and noise correlations in biochemical sensing +
113  +
S
Stochastic thermodynamics in mesoscopic chemical oscillation systems +
113  +
H
High-precision test of Landauer's principle in a feedback trap +
113  +
T
Thermodynamics of statistical inference by cells +
113  +
F
Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees +
1136  +
G
Good practices in free-energy calculations +
114  +
F
Fast-growth thermodynamic integration: Error and efficiency analysis +
114  +
A
Are Recursion Theoretic Arguments Useful in Complexity Theory? +
114  +
T
Thermodynamic Uncertainty Relation for Biomolecular Processes +
114  +
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium +
114  +
S
Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation +
115  +
O
Optimal Prediction by Cellular Signaling Networks +
115  +
P
Physical Limit to Concentration Sensing Amid Spurious Ligands +
115  +
D
Dissipation Bound for Thermodynamic Control +
115  +
T
Three-dimensional simulations of reversible bimolecular reactions: The simple target problem +
115  +
O
On the generation of cryptographically strong pseudo-random sequences +
115 LNCS  +
K
Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation +
117  +
H
High-energy behavior in quantum field theory +
118  +
Q
Quantum Simulation of Single-Qubit Thermometry Using Linear Optics +
118  +
F
Fundamental Costs in the Production and Destruction of Persistent Polymer Copies +
118  +
T
The quantum open system as a model of the heat engine +
12  +
R
Relationship between subsistence and age at weaning in "preindustrial" societies +
12  +
E
Entropy production as correlation between system and reservoir +
12  +
O
On the nature of allosteric transitions: A plausible model +
12  +
P
Progressive methylation of ageing histones by Dot1 functions as a timer +
12  +
Probabilistic algorithm for testing primality +
12  +
Pseudorandom generators for space-bounded computation +
12  +
S
Small-world brain networks +
12  +
F
Fluctuation theorem for nonequilibrium reactions +
120  +
D
Dietary constraints on encephalization in primates +
120  +
S
Single-ensemble nonequilibrium path-sampling estimates of free energy differences +
120  +
C
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality +
124  +
F
Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality +
125  +
C
Coding of Odors by a Receptor Repertoire +
125  +
T
The Use of Information Theory in Evolutionary Biology +
1256  +
G
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation +
126  +
S
Stochastic thermodynamics of chemical reaction networks +
126  +
F
Fluctuation theorem for currents and Schnakenberg network theory +
127  +
E
Entropy production for mechanically or chemically driven biomolecules +
128  +
H
How the nature of an observation affects single-trajectory entropies +
128  +
D
Defining genes: A computational framework +
128  +
B
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise +
129  +
O
Optimal protocols for minimal work processes in underdamped stochastic thermodynamics +
129  +
E
Entropy production and fluctuation theorem along a stochastic limit cycle +
129  +
L
Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans +
129  +
T
Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification +
129  +
D
Deterministic Function Computation with Chemical Reaction Network +
13  +
B
Broken symmetries and the masses of gauge bosons +
13  +
O
Optical polarization evolution near a non-Hermitian degeneracy +
13  +
M
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye +
13  +
P
Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specific +
13  +
A
A test of metabolically efficient coding in the retina +
13  +
O
One-component systems dominate signal transduction in prokaryotes +
13  +
C
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host +
13  +
R
Reachability bounds for chemical reaction networks and strand displacement systems +
13  +
D
Derandomizing polynomial identity tests means proving circuit lower bounds +
13  +
Designing optimal discrete-feedback thermodynamic engines +
13  +
T
The cost of cortical computation +
13  +
P
Probabilistic mapping and volume measurement of human primary auditory cortex +
13  +
C
Consensus paper: The cerebellum's role in movement and cognition +
13  +
A
An estimate of the total DNA in the biosphere +
13  +
A master equation description of local fluctuations +
13  +
C
Calcium, the two-faced messenger of olfactory transduction and adaptation +
13  +
D
Deterministic function computation with chemical reaction networks +
13  +
I
Image quality assessment: From error visibility to structural similarity +
13  +
P
Precis of The Emperor's New Mind +
13  +
S
Steady state thermodynamics +
130  +
I
Inertial effects in nonequilibrium work fluctuations by a path integral approach +
130  +
C
Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions +
130  +
O
Optimizing the switching function for nonequilibrium free-energy calculations: An on-the-fly approach +
130  +
M
Measurement of work in single-molecule pulling experiments +
130  +
N
Nonequilibrium steady state thermodynamics and fluctuations for stochastic systems +
130  +
P
Probing the Limits to Positional Information +
130  +
E
Engineering complex riboswitch regulation by dual genetic selection +
130  +
T
The work-Hamiltonian connection and the usefulness of the Jarzynski equality for free energy calculations +
130  +
D
Disrupted small-world networks in schizophrenia +
131  +
C
Control of DNA strand displacement kinetics using toehold exchange +
131  +
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? +
132  +
R
Representation of nonequilibrium steady states in large mechanical systems +
134  +
E
Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics +
134  +
D
Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism +
134  +
E
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments +
134  +
Energy conversion by molecular motors coupled to nucleotide hydrolysis +
135  +
P
Potential and flux decomposition for dynamical systems and non-equilibrium thermodynamics: Curvature, gauge field, and generalized fluctuation-dissipation theorem +
135  +
N
Non-equilibrium spin-boson model: Counting statistics and the heat exchange fluctuation theorem +
135  +
R
Rare switching events in non-stationary systems +
136  +
M
Metabolic correlates of hominid brain evolution +
136  +
N
Nonequilibrium fluctuations in small systems: from physics to biology +
137  +
Non-equilibrium thermodynamics and topology of currents +
137  +
E
Eulerian and lagrangian pictures of non-equilibrium diffusions +
137  +
F
Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains +
137  +
A
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory +
137  +
D
Defining Network Topologies that Can Achieve Biochemical Adaptation +
138  +
C
Chemical reaction network theory for in-silico biologists +
138  +
E
Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors +
139  +
O
Open problems on information and feedback controlled systems +
14  +
E
Experimental implementation of a nonthermalizing quantum thermometer +
14  +
B
Brownian motion: A paradigm of soft matter and biological physics +
14  +
G
Grid cells generate an analog error-correcting code for singularly precise neural computation +
14  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
14  +
S
Statistical Processors +
14  +
L
Leaderless deterministic chemical reaction networks +
14  +
E
Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States +
142  +
I
Inequalities for Non-equilibrium Fluctuations of Work +
142  +
N
Noise Filtering Strategies in Adaptive Biochemical Signaling Networks +
142  +
T
The Value of Information for Populations in Varying Environments +
142  +
Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale +
143  +
G
Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications +
143  +
Q
Quantum Jarzynski-Sagawa-Ueda Relations +
143  +
G
Glucans monomer-exchange dynamics as an open chemical network +
143  +
E
Epigenetics in alternative pre-mRNA splicing +
144  +
R
Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions +
145  +
A
A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes +
146  +
I
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification +
146  +
M
Mechanisms for the inheritance of chromatin states +
146  +
R
Refined Second Law of Thermodynamics for Fast Random Processes +
147  +
I
Information integration: Its relevance to brain function and consciousness +
148  +
D
Dynamics and memory of heterochromatin in living cells +
149  +
A
An update on the nonequilibrium linear response +
15  +
Q
Quantum speed limits-primer, perspectives, and potential future directions +
15  +
N
Neurophysiological architecture of functional magnetic resonance images of human brain +
15  +
I
In silico evolution of diauxic growth +
15  +
Retrieved from "https://centre.santafe.edu/thermocomp/w/index.php?title=Property:Volume&oldid=328"
Powered by Semantic MediaWiki