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	Year	Abstract
A new notation for quantum mechanics	1939
A new polynomial-time algorithm for linear programming	1984
A note on monte carlo primality tests and algorithmic information theory	1978
A note on the Jarzynski equality
A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries
A possible classification of nonequilibrium steady states	2006
A quantitative analysis of sniffing strategies in rats performing odor detection tasks	1987
A quantitative comparison of sRNA-based and protein-based gene regulation	2008
A quantitative estimation of the global translational activity in logarithmically growing yeast cells	2008
A reconfigurable stochastic architecture for highly reliable computing
A rigorous derivation of the chemical master equation	1992
A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats.
A simple coding procedure enhances a neuron’s information capacity	1981
A simple population protocol for fast robust approximate majority	2008
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions	2009
A simple theory of motor protein kinetics and energetics. II	2000
A small world of neuronal synchrony	2008
A spectral transform approach to stochastic circuits	2012
A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic	2012
A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms	2008
A synthetic oscillatory network of transcriptional regulators	2000
A systems perspective on early olfactory coding	1999
A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension	2007
A tension-based theory of morphogenesis and compact wiring in the central nervous system	1997
A test of metabolically efficient coding in the retina	2002
A theory of the learnable
A universal scaling law between gray matter and white matter of cerebral cortex.
A yeast protein similar to bacterial two-component regulators.
ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity
ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light	2008
ATP-dependent mechanics of red blood cells
Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis
Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease
Accuracy of direct gradient sensing by cell-surface receptors	2009
Active membrane fluctuations studied by micropipet aspiration	2001
Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments	2011
Addressing the wicked problem of quality in higher education: theoretical approaches and implications
Adipose tissue in human infancy and childhood: An evolutionary perspective	1998
Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics	2006
Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation
Aerobic glycolysis in the human brain is associated with development and neotenous gene expression	2014
Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance	2014
Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI	2011
Age-related changes in modular organization of human brain functional networks	2009
Algebraic methods in the theory of lower bounds for Boolean circuit complexity
Algorithmic Self-Assembly of DNA Sierpinski Triangles
Algorithmic randomness and physical entropy	1989
Alternative splicing in the nervous system: An emerging source of diversity and regulation	2003
Amorphous computing	2012
Amplification and adaptation in regulatory and sensory systems
An Energy Budget for Signaling in the Grey Matter of the Brain
An Energy Budget for the Olfactory Glomerulus
An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation	2002
An Introduction to Kolmogorov Complexity and Its Applications	2008
An O(log n log log n) Space Algorithm for Undirected st-connectivity
An amplified sensitivity arising from covalent modification in biological systems.
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions	1967
An analysis of selected computer interchange color spaces
An analytical solution to the kinetics of breakable filament assembly	2009
An architecture for fault-tolerant computation with stochastic logic	2011
An autonomous and reversible Maxwell's demon	2013
An effect of DNA sequence on nucleosome occupancy and removal	2011
An efficient 10GBASE-T ethernet LDPC decoder design with low error floors	2010
An efficient graph theory based method to identify every minimal reaction set in a metabolic network	2014
An estimate of the total DNA in the biosphere	2015
An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions	2009
An experimental test of the Jarzynski equality in a mechanical experiment	2005
An information integration theory of consciousness	2004
An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle	2012
An information-theoretic equality implying the Jarzynski relation	2012
An informational process based on reversible universal cellular automata	1990
An intermediate level of abstraction for computational systems chemistry	2019
An introduction to population protocols	2009
An introduction to thermodynamics and statistical mechanics
An update on the nonequilibrium linear response	2013
Analog Computation by DNA Strand Displacement Circuits	2016
Analog Versus Digital: Extrapolating from Electronics to Neurobiology
Analog synthetic biology
Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits	2010
Analyzing friction forces with the Jarzynski equality	2008
Analyzing molecular reaction networks: From pathways to chemical organizations	2006
Another proof of Gell-Mann and Low's theorem	2007
Application of Boolean Algebra to Switching Circuit Design and to Error Detection
Application of importance sampling to the computation of large deviations in nonequilibrium processes	2011
Application-level correctness and its impact on fault tolerance	2007
ApproxMA: Approximate Memory Access for Dynamic Precision Scaling
Approximate computing: An emerging paradigm for energy-efficient design	2013
Approximate counting, uniform generation and rapidly mixing Markov chains	1989
Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network	1995
Are Recursion Theoretic Arguments Useful in Complexity Theory?	1986
Argonaute proteins couple chromatin silencing to alternative splicing	2012
Article for analog vector algebra computation	1999
Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements	2014
Astrocytes Couple Synaptic Activity to Glucose Utilization in the Brain.
Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution	2012
Asymmetrically modified nucleosomes	2012
Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic	1994
Asymptotics of work distributions in nonequilibrium systems	2009
Asynchronous computation with molecular reactions	2011
Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study	1994
Average Case Complete Problems
Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation
BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study	2009
BPP and the polynomial hierarchy	1983
BRAIN WORK AND BRAIN IMAGING
Bacterial chemoreceptors: high-performance signaling in networked arrays	2008
Bacterial computing with engineered populations
Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states	2011
Basal Metabolic Rate in Man	1981
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise	2008
Bayesian integration in sensorimotor learning	2004
Best-effort computing: Re-thinking parallel software and hardware
Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome	2010
Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?	2005
Bidirectional single-electron counting and the fluctuation theorem	2010
Binary Multiplication with PN Sequences	1988
Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer.
Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1)	2000
Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors	2003
Biological solutions to transport network design
Biomolecules under mechanical force	2010
Biorthogonal quantum mechanics	2014
Body Composition and Energy Needs during Growth
Body size and metabolic rate.
Bona fide stochastic resonance: A view point from stochastic energetics	2005
Boundary layers in stochastic thermodynamics	2012
Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines	2012
Brain Graphs: Graphical Models of the Human Brain Connectome
Brain anatomical network and intelligence	2009
Brain and body oxygen requirements of Gnathonemus petersii, a fish with an exceptionally large brain
Brain growth, life history, and cognition in primate and human evolution	2004
Breaking DES Using a Molecular Computer
Broadband Criticality of Human Brain Network Synchronization
Broken symmetries and the masses of gauge bosons	1964
Brownian motion: A paradigm of soft matter and biological physics	2005
Brownian motors: Noisy transport far from equilibrium	2002
Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium
Building programmable jigsaw puzzles with RNA	2004
CNS energy metabolism as related to function	2000
CREW PRAMs and Decision Trees
CURRENT OPINION IN STRUCTURAL BIOLOGY
Calcium signalling and regulation in olfactory neurons	1999
Calcium, the two-faced messenger of olfactory transduction and adaptation	2003
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality	2006
Calculating potentials of mean force from steered molecular dynamics simulations.
Calculating source line level energy information for Android applications
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host	2013
Cell Type-Specific Tuning of Hippocampal Interneuron Firing during Gamma Oscillations In Vivo
Cellular energy utilization and molecular origin of standard metabolic rate in mammals
Cellular stoichiometry of the components of the chemotaxis signaling complex	2004
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing	2002
Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation	1999
Cerebellar LTD and Pattern Recognition by Purkinje Cells	2007
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity	2011
Challenges for complexity measures: A perspective from social dynamics and collective social computation	2011
Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights	1978
Channel noise in neurons	2000
Characterization of Minimum Error Linear Coding with Sensory and Neural Noise
Characterization of the RNA content of chromatin	2010
Characterization of the anterior cingulate's role in the at-risk mental state using graph theory
Characterizing plastic depinning dynamics with the fluctuation theorem	2011
Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life.	1963
Chemical Reaction Networks for Computing Polynomials	2017
Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms	2005
Chemical implementation of finite-state machines
Chemical implementation of neural networks and Turing machines
Chemical kinetics is turing universal	1997
Chemical reaction network theory for in-silico biologists	2003
Chemical sensing by nonequilibrium cooperative receptors	2013
Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions	2008
Chemotaxis in Escherichia coli analysed by three-dimensional tracking	1972
Childhood and the evolution of the human life course: An Introduction
Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription
Chromatin and epigenetic regulation of pre-mrna processing	2012
Chromatin computation	2012
Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels	2012
Chromatin organization marks exon-intron structure	2009
Chromatin proteins: Key responders to stress	2012
Chromatin structure and the inheritance of epigenetic information	2010
Circulation and Energy Metabolism of the Brain.
Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise	2009
Classical and quantum fluctuation theorems for heat exchange	2004
Classical and quantum limitations on energy consumption in computation	1982
Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality	2011
Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty	1976
Closed-loop control strategy with improved current for a flashing ratchet	2005
Coding Efficiency and the Metabolic Cost of Sensory and Neural Information
Coding of Odors by a Receptor Repertoire	2006
Cognitive Effort Drives Workspace Configuration of Human Brain Functional Networks
Cognitive fitness of cost-efficient brain functional networks
Collective dynamics of 'small-world' networks	1998
Colloquium: The physics of Maxwell's demon and information	2009
Combinatorial Problems and Exercises
Combinatorial complexity in chromatin structure and function: Revisiting the histone code	2012
Combinatorial complexity of pathway analysis in metabolic networks.
Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums	2013
Combinatorial readout of dual histone modifications by paired chromatin-associated modules	2011
Combined analog and action potential coding in hippocampal mossy fibers	2006
Comment on "Failure of the work-Hamiltonian connection for free-energy calculations" by Jose M. G. Vilar and J. Miguel Rubi
Communication in neuronal networks	2003
Communication lower bounds using directional derivatives
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories?	2010
Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid	1991
Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process
Comparison of far-from-equilibrium work relations	2007
Comparison of work fluctuation relations	2007
Compartmental organization of the olfactory bulb glomerulus	1999
Compendium of the Foundations of Classical Statistical Physics	2007
Compiler optimization on instruction scheduling for low power	2000
Complex Extension of Quantum Mechanics	2002
Complex and detailed balancing of chemical reaction networks revisited	2015
Complex brain networks: graph theoretical analysis of structural and functional systems
Complex network measures of brain connectivity: Uses and interpretations	2010
Complex parameter landscape for a complex neuron model	2006
Complexity, entropy and the physics of information
Component-placement optimization in the brain	1996
Computation in networks of passively mobile finite-state sensors	2006
Computation on stochastic bit streams digital image processing case studies	2014
Computation with finite stochastic chemical reaction networks	2008
Computational Complexity of Probabilistic Turing Machines
Computational Complexity: A Modern Approach
Computational complexity: a modern approach
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes	2005
Computational design of nucleic acid feedback control circuits	2014
Computational limits to binary genes.
Computational selection of nucleic acid biosensors via a slip structure model	2007
Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury	2006
Computer simulation of Feynman's ratchet and pawl system	2010
Computers and Intractability: a guide to NP-completeness
Computing the optimal protocol for finite-time processes in stochastic thermodynamics	2008
Computing with Noisy Information
Conformational spread in a ring of proteins: A stochastic approach to allostery	2001
Connectivity optimization and the positioning of cortical areas
Connectivity-driven white matter scaling and folding in primate cerebral cortex
Consciousness as integrated information: A provisional manifesto	2008
Consensus paper: The cerebellum's role in movement and cognition	2014
Conservative logic	1982
Constrained maximal power in small engines	2010
Construction and optimization of a quantum analog of the Carnot cycle	2015
Construction of an in vitro bistable circuit from synthetic transcriptional switches	2006
Continuous time controllers using digital programmable devices
Control of DNA strand displacement kinetics using toehold exchange	2009
Convergence in the olfactory system: quantitative aspects of odour sensitivity	1978
Cooling classical particles with a microcanonical szilard engine	2010
Cooperative binding of effectors by an allosteric ribozyme.
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain	2009
Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors	2009
Cooperativity, sensitivity, and noise in biochemical signaling	2008
Coordination languages and their significance

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