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From Thermodynamics of Computation
Author name | Source name | Year | |
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Entropy production theorems and some consequences | Arnab Saha Sourabh Lahiri A. M. Jayannavar | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2009 |
Thermopower with broken time-reversal symmetry | Keiji Saito Giuliano Benenti Giulio Casati Tomaž Prosen | Physical Review B - Condensed Matter and Materials Physics | 2011 |
Generating function formula of heat transfer in harmonic networks | Keiji Saito Abhishek Dhar | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2011 |
Heat conduction in a three dimensional anharmonic crystal | Keiji Saito Abhishek Dhar | Physical Review Letters | 2010 |
Efficiency and fluctuation in tight-coupling model of molecular motor | Hidetsugu Sakaguchi | Journal of the Physical Society of Japan | 2006 |
Principles of control thermodynamics | P. Salamon J. D. Nulton G. Siragusa T. R. Andersen A. Limon | Energy | 2001 |
Chemical Reaction Networks for Computing Polynomials | Sayed Ahmad Salehi Keshab K. Parhi Marc D. Riedel | ACS Synthetic Biology | 2017 |
Neurophysiological architecture of functional magnetic resonance images of human brain | Raymond Salvador John Suckling Martin R. Coleman John D. Pickard David Menon Ed Bullmore | Cerebral Cortex | 2005 |
Recent Development in Efficient Adiabatic Logic Circuits and Power Analysis with CMOS Logic | Minakshi Sanadhya M. Vinoth Kumar | Procedia Computer Science | 2015 |
Maximum work extraction and implementation costs for nonequilibrium Maxwell's demons | Henrik Sandberg Jean Charles Delvenne Nigel J. Newton Sanjoy K. Mitter | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2014 |
Histone H3 tail clipping regulates gene expression | Helena Santos-Rosa Antonis Kirmizis Christopher Nelson Till Bartke Nehme Saksouk Jacques Cote Tony Kouzarides | Nature Structural and Molecular Biology | 2009 |
Stochastic functions using sequential logic | Naman Saraf Kia Bazargan David J. Lilja Marc D. Riedel | 2013 IEEE 31st International Conference on Computer Design, ICCD 2013 | 2013 |
Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits | O. Sarbishei K. Radecka | IEEE/ACM International Conference on Computer-Aided Design, Digest of Technical Papers, ICCAD | 2010 |
Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication | Peter Sarkies Julian E. Sale | Cellular and Molecular Life Sciences | 2012 |
Irreversible dynamics of a massive intruder in dense granular fluids | A. Sarracino D. Villamaina G. Gradenigo A. Puglisi | EPL | 2010 |
Thermodynamic Costs of Information Processing in Sensory Adaptation | Pablo Sartori Léo Granger Chiu Fan Lee Jordan M. Horowitz | PLoS Computational Biology | 2014 |
Noise Filtering Strategies in Adaptive Biochemical Signaling Networks | Pablo Sartori Yuhai Tu | Journal of Statistical Physics | 2011 |
Kinetic versus energetic discrimination in biological copying | Pablo Sartori Simone Pigolotti | Physical Review Letters | 2013 |
An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation | Katsuhiko Sato | Journal of the Physical Society of Japan | 2002 |
Synthetic biology: It's an analog world | Herbert M. Sauro Kyung Kim | Nature | 2013 |
Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation | Michael A. Savageau Rolf R. Freter | Biochemistry | 1979 |
Cube v4: From performance report explorer to performance analysis tool | Pavel Saviankou Michael Knobloch Anke Visser Bernd Mohr | Procedia Computer Science | 2015 |
The connectional organization of the cortico-thalamic system of the cat | J. W. Scannell G. A.P.C. Burns C. C. Hilgetag M. A. O'Neil M. P. Young | Cerebral Cortex | 1999 |
Determining cortical landscapes | Jack W. Scannell | Nature | 1997 |
Entropy production for mechanically or chemically driven biomolecules | Tim Schmiedl Thomas Speck Udo Seifert | Journal of Statistical Physics | 2007 |
Efficiency at maximum power: An analytically solvable model for stochastic heat engines | T. Schmiedl Udo Seifert | EPL | 2008 |
Efficiency of molecular motors at maximum power | T. Schmiedl Udo Seifert | EPL | 2008 |
Stochastic thermodynamics of chemical reaction networks | Tim Schmiedl Udo Seifert | Journal of Chemical Physics | 2007 |
Optimal finite-time processes in stochastic thermodynamics | Tim Schmiedl Udo Seifert | Physical Review Letters | 2007 |
Network theory of microscopic and macroscopic behavior of master equation systems | J. Schnakenberg | Reviews of Modern Physics | 1976 |
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing | Gunnar Schotta Anja Ebert Veiko Krauss Andreas Fischer Jan Hoffmann Stephen Rea Thomas Jenuwein Rainer Dorn Gunter Reuter | EMBO Journal | 2002 |
Fundamental aspects of protein - Protein association kinetics | G. Schreiber G. Haran H. X. Zhou | Chemical Reviews | 2009 |
Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates | S. Schuler T. Speck C. Tietz J. Wrachtrup Udo Seifert | Physical Review Letters | 2005 |
Variable channel expression in identified single and electrically coupled neurons in different animals | David J. Schulz Jean Marc Goaillard Eve Marder | Nature Neuroscience | 2006 |
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation | Stefan Schuster Ronny Schuster | Journal of Mathematical Chemistry | 1989 |
Probabilistic algorithms for verification of polynomial identities | Jacob T. Schwartz | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 1979 |
Chromatin organization marks exon-intron structure | Schraga Schwartz Eran Meshorer Gil Ast | Nature Structural and Molecular Biology | 2009 |
Sniffing and spatiotemporal coding in olfaction | John W. Scott | Chemical Senses | 2006 |
The structure and function of the homeodomain | Matthew P. Scott John W. Tamkun George W. Hartzell | BBA - Reviews on Cancer | 1989 |
Extracting work from a single heat bath via vanishing quantum coherence | Marlan O. Scully M. Suhail Zubairy Girish S. Agarwal Herbert Walther | Science | 2003 |
Enzyme-free nucleic acid logic circuits | Georg Seelig David Soloveichik David Yu Zhang Erik Winfree | Science | 2006 |
Stochastic thermodynamics, fluctuation theorems and molecular machines | Udo Seifert | Reports on Progress in Physics | 2012 |
Entropy production along a stochastic trajectory and an integral fluctuation theorem | Udo Seifert | Physical Review Letters | 2005 |
Efficiency of autonomous soft nanomachines at maximum power | Udo Seifert | Physical Review Letters | 2011 |
Fluctuation theorem for a single enzym or molecular motor | Udo Seifert | Europhysics Letters | 2005 |
Fluctuation theorem for birth-death or chemical master equations with time-dependent rates | Udo Seifert | Journal of Physics A: Mathematical and General | 2004 |
Generalized einstein or green-kubo relations for active biomolecular transport | Udo Seifert | Physical Review Letters | 2010 |
Stochastic thermodynamics of single enzymes and molecular motors | Udo Seifert | European Physical Journal E | 2011 |
Microscopic heat from the energetics of stochastic phenomena | Ken Sekimoto | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2007 |
Relationship between subsistence and age at weaning in "preindustrial" societies | Daniel W. Sellen Diana B. Smay | Human Nature | 2001 |
Fluctuation relation and heterogeneous superdiffusion in glassy transport | Mauro Sellitto | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2009 |
A molecular information ratchet | Viviana Serreli Chin Fa Lee Euan R. Kay David A. Leigh | Nature | 2007 |
On the generation of cryptographically strong pseudo-random sequences | Adi Shamir | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 1981 |
Factoring numbers in O(logn) arithmetic steps | Adi Shamir | Information Processing Letters | 1979 |
Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection | X. D. Shang P. Tong K. Q. Xia | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2005 |
The folding cooperativity of a protein is controlled by its chain topology | Elizabeth A. Shank Ciro Cecconi Jesse W. Dill Susan Marqusee Carlos Bustamante | Nature | 2010 |
Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains | Benjamin Hertz Shargel Tom Chou | Journal of Statistical Physics | 2009 |
Tracking forecast memories for stochastic decoding | Saeed Sharifi Tehrani Ali Naderi Guy Armand Kamendje Shie Mannor Warren J. Gross | Journal of Signal Processing Systems | 2011 |
Engineering complex riboswitch regulation by dual genetic selection | Vandana Sharma Yoko Nomura Yohei Yokobayashi | Journal of the American Chemical Society | 2008 |
Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulation | Frank R. Sharp John S. Kauer Gordon M. Shepherd | Brain Research | 1975 |
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions | David Shear | Journal of Theoretical Biology | 1967 |
The TAU parallel performance system | Sameer S. Shende Allen D. Malony | International Journal of High Performance Computing Applications | 2006 |
Physiological evidence for dendrodendritic synaptic interactions in the rabbit's olfactory glomerulus | Gordon M. Shepherd | Brain Research | 1971 |
Olfactory Bulb | Gordon M. Shepherd Wei R. Chen Charles A. Greer | The Synaptic Organization of the Brain | 2004 |
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli | Thomas S. Shimizu Yuhai Tu Howard C. Berg | Molecular Systems Biology | 2010 |
Verifying chemical reaction network implementations: A pathway decomposition approach | Seung Woo Shin Chris Thachuk Erik Winfree | Theoretical Computer Science | 2019 |
Structural sources of robustness in biochemical reaction networks | Guy Shinar Martin Feinberg | Science | 2010 |
Fluctuation theorem for partially masked nonequilibrium dynamics | Naoto Shiraishi Takahiro Sagawa | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2015 |
Heat generation required by information erasure | Kousuke Shizume | Physical Review E | 1995 |
Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold | Bella Shlyahovsky Yang Li Oleg Lioubashevski Johann Elbaz Itamar Willner | ACS Nano | 2009 |
Fluctuation-dissipation relations in driven dissipative systems | Yair Shokef Guy Bunin Dov Levine | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2006 |
Energetic basis of brain activity: Implications for neuroimaging | Robert G. Shulman Douglas L. Rothman Kevin L. Behar Fahmeed Hyder | Trends in Neurosciences | 2004 |
BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study | R. J. Silverwood B. L. De Stavola T. J. Cole D. A. Leon | International Journal of Obesity | 2009 |
Approximate counting, uniform generation and rapidly mixing Markov chains | Alistair Sinclair Mark Jerrum | Information and Computation | 1989 |
Dynamical fluctuations for periodically driven diffusions | Navinder Singh Bram Wynants | Journal of Statistical Mechanics: Theory and Experiment | 2010 |
Novel algorithms for fast statistical analysis of scaled circuits | Amith Singhee Rob A. Rutenbar | Lecture Notes in Electrical Engineering | 2009 |
The Berry phase and the pump flux in stochastic chemical kinetics | N. A. Sinitsyn I. Nemenman | EPL | 2007 |
Supersymmetry and fluctuation relations for currents in closed networks | Nikolai A. Sinitsyn Alexei Akimov Vladimir Y. Chernyak | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2011 |
The stochastic pump effect and geometric phases in dissipative and stochastic systems | N. A. Sinitsyn | Journal of Physics A: Mathematical and Theoretical | 2009 |
Expanders, randomness, or time versus space: Extended abstract | Michael Sipser | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 1986 |
Dynamics of cooperativity in chemical sensing among cell-surface receptors | Monica Skoge Yigal Meir Ned S. Wingreen | Physical Review Letters | 2011 |
Chemical sensing by nonequilibrium cooperative receptors | Monica Skoge Sahin Naqvi Yigal Meir Ned S. Wingreen | Physical Review Letters | 2013 |
Thermodynamics of natural selection III: Landauer’s principle in computation and chemistry | Eric Smith | Journal of Theoretical Biology | 2008 |
Thermodynamics of natural selection I: Energy flow and the limits on organization | Eric Smith | Journal of Theoretical Biology | 2008 |
Network modelling methods for FMRI | Stephen M. Smith Karla L. Miller Gholamreza Salimi-Khorshidi Matthew Webster Christian F. Beckmann Thomas E. Nichols Joseph D. Ramsey Mark W. Woolrich | NeuroImage | 2011 |
Thermodynamics of natural selection II: Chemical Carnot cycles | Eric Smith | Journal of Theoretical Biology | 2008 |
Thermodynamics of natural selection III: Landauer's principle in computation and chemistry | Eric Smith | Journal of Theoretical Biology | 2008 |
Chromatin proteins: Key responders to stress | Karen T. Smith Jerry L. Workman | PLoS Biology | 2012 |
A Simple Histone Code Opens Many Paths to Epigenetics | Kim Sneppen Ian B. Dodd | PLoS Computational Biology | 2012 |
Lower bounds on probabilistic linear decision trees | Marc Snir | Theoretical Computer Science | 1985 |
Energetics of functional activation in neural tissues | Louis Sokoloff | Neurochemical Research | 1999 |
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM | Louis Sokoloff | Journal of Neurochemistry | 1977 |
Computation with finite stochastic chemical reaction networks | David Soloveichik Matthew Cook Erik Winfree Jehoshua Bruck | Natural Computing | 2008 |
DNA as a universal substrate for chemical kinetics (Extended Abstract) | David Soloveichik Georg Seelig Erik Winfree | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) | 2009 |
Analog Computation by DNA Strand Displacement Circuits | Tianqi Song Sudhanshu Garg Reem Mokhtar Hieu Bui John Reif | ACS Synthetic Biology | 2016 |
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction | Eduardo D. Sontag | IEEE Transactions on Automatic Control | 2001 |
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving | Thomas Speck | Journal of Physics A: Mathematical and Theoretical | 2011 |
Role of external flow and frame invariance in stochastic thermodynamics | Thomas Speck Jakob Mehl Udo Seifert | Physical Review Letters | 2008 |
Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers | T. Speck Udo Seifert | European Physical Journal B | 2005 |
Integral fluctuation theorem for the housekeeping heat | T. Speck Udo Seifert | Journal of Physics A: Mathematical and General | 2005 |
Extended fluctuation-dissipation theorem for soft matter in stationary flow | Thomas Speck Udo Seifert | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2009 |
The Jarzynski relation, fluctuation theorems, and stochastic thermodynamics for non-Markovian processes | T. Speck Udo Seifert | Journal of Statistical Mechanics: Theory and Experiment | 2007 |
Space-time phase transitions in driven kinetically constrained lattice models | T. Speck J. P. Garrahan | European Physical Journal B | 2011 |
Distribution of work in isothermal nonequilibrium processes | Thomas Speck Udo Seifert | Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics | 2004 |
Nonequilibrium thermodynamics of stochastic systems with odd and even variables | Richard E. Spinney Ian J. Ford | Physical Review Letters | 2012 |
Entropy production in full phase space for continuous stochastic dynamics | Richard E. Spinney Ian J. Ford | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2012 |
The human connectome: A structural description of the human brain | Olaf Sporns Giulio Tononi Rolf Kötter | PLoS Computational Biology | 2005 |
Organization, development and function of complex brain networks | Olaf Sporns Dante R. Chialvo Marcus Kaiser Claus C. Hilgetag | Trends in Cognitive Sciences | 2004 |
Identification and classification of hubs in brain networks | Olaf Sporns Christopher J. Honey Rolf Kötter | PLoS ONE | 2007 |
Evolving Coordinated Behavior by Maximizing Information Structure | Olaf Sporns Max Lungarella | Complexity | 2006 |
Exactly solvable model for driven dissipative systems | Yair Srebro Dov Levine | Physical Review Letters | 2004 |
Grid cells generate an analog error-correcting code for singularly precise neural computation | Sameet Sreenivasan Ila Fiete | Nature Neuroscience | 2011 |
Enzyme-free nucleic acid dynamical systems | Niranjan Srinivas James Parkin Georg Seelig Erik Winfree David Soloveichik | Science | 2017 |
Defining genes: A computational framework | Sonja J. Prohaska Christian V. Forst David C. Krakauer Peter Stadler | Theory in Biosciences | 2009 |
Small-world networks and functional connectivity in Alzheimer's disease | C. J. Stam B. F. Jones G. Nolte M. Breakspear Ph Scheltens | Cerebral Cortex | 2007 |
The entorhinal grid map is discretized | Hanne Stensola Tor Stensola Trygve Solstad Kristian FrØland May Britt Moser Edvard I. Moser | Nature | 2012 |
Local potential connectivity in cat primary visual cortex | Armen Stepanyants Judith A. Hirsch Luis M. Martinez Zoltán F. Kisvárday Alex S. Ferecskó Dmitri B. Chklovskii | Cerebral Cortex | 2008 |
Retina | Peter Sterling Jonathan B. Demb | The Synaptic Organization of the Brain | 2004 |
Representations of Odor in the Piriform Cortex | Dan D. Stettler Richard Axel | Neuron | 2009 |
Cerebellar LTD and Pattern Recognition by Purkinje Cells | Volker Steuber Wolfgang Mittmann Freek E. Hoebeek R. Angus Silver Chris I. De Zeeuw Michael Häusser Erik De Schutter | Neuron | 2007 |
Functional organization of rat olfactory bulb analysed by the 2‐deoxyglucose method | William B. Stewart John S. Kauer Gordon M. Shepherd | Journal of Comparative Neurology | 1979 |
Thermodynamics of prediction | Susanne Still David A. Sivak Anthony J. Bell Gavin Crooks | Physical Review Letters | 2012 |
Thermodynamics of a physical model implementing a Maxwell demon | Philipp Strasberg Gernot Schaller Tobias Brandes Massimiliano Esposito | Physical Review Letters | 2013 |
Neuroimaging and neuroenergetics: Brain activations as information-driven reorganization of energy flows | Kuzma Strelnikov | Brain and Cognition | 2010 |
Molecular taxonomy of major neuronal classes in the adult mouse forebrain | Ken Sugino Chris M. Hempel Mark N. Miller Alexis M. Hattox Peter Shapiro Caizi Wu Z. Josh Huang Sacha B. Nelson | Nature Neuroscience | 2006 |
Proactive Control of Approximate Programs | Xin Sui Andrew Lenharth Donald S. Fussell Keshav Pingali | ACM SIGARCH Computer Architecture News | 2016 |
Minimal model for Brownian vortexes | Bo Sun David G. Grier Alexander Y. Grosberg | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2010 |
Moments of work in the two-point measurement protocol for a driven open quantum system | S. Suomela P. Solinas J. P. Pekola J. Ankerhold T. Ala-Nissila | Physical Review B - Condensed Matter and Materials Physics | 2014 |
Development of large-scale functional brain networks in children | Kaustubh Supekar Mark Musen Vinod Menon | PLoS Biology | 2009 |
One-dimensional shift of a brownian particle under the feedback control | Hiroyuki Suzuki Youhei Fujitani | Journal of the Physical Society of Japan | 2009 |
Tagged particle in a sheared suspension: Effective temperature determines density distribution in a slowly varying external potential beyond linear response | G. Szamel M. Zhang | EPL | 2011 |
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen | L. Szilard | Zeitschrift für Physik | 1929 |
Deoxyribozymes that recode sequence information | Jeffrey J. Tabor Matthew Levy Andrew D. Ellington | Nucleic Acids Research | 2006 |
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models | Julien Tailleur Jorge Kurchan Vivien Lecomte | Journal of Physics A: Mathematical and Theoretical | 2008 |
Generalization of the second law for a transition between nonequilibrium states | K. Takara H. H. Hasegawa D. J. Driebe | Physics Letters, Section A: General, Atomic and Solid State Physics | 2010 |
Fluctuation theorems: Work is not an observable | Peter Talkner Eric Lutz Peter Hänggi | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2007 |
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification | Minjia Tan Hao Luo Sangkyu Lee Fulai Jin Jeong Soo Yang Emilie Montellier Thierry Buchou Zhongyi Cheng Sophie Rousseaux Nisha Rajagopal Zhike Lu Zhen Ye Qin Zhu Joanna Wysocka Yang Ye Saadi Khochbin Bing Ren Yingming Zhao | Cell | 2011 |
Optimizing Google's warehouse scale computers: The NUMA experience | Lingjia Tang Jason Mars Xiao Zhang Robert Hagmann Robert Hundt Eric Tune | Proceedings - International Symposium on High-Performance Computer Architecture | 2013 |
Inertial effects in nonequilibrium work fluctuations by a path integral approach | Tooru Taniguchi E. G.D. Cohen | Journal of Statistical Physics | 2008 |
Nonequilibrium steady state thermodynamics and fluctuations for stochastic systems | Tooru Taniguchi E. G.D. Cohen | Journal of Statistical Physics | 2008 |
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Computing the optimal protocol for finite-time processes in stochastic thermodynamics | Holger Then Andreas Engel | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2008 |
Resurrecting ancient genes: Experimental analysis of extinct molecules | Joseph W. Thornton | Nature Reviews Genetics | 2004 |
Measurement of stochastic entropy production | C. Tietz S. Schuler T. Speck J. Wrachtrup Udo Seifert | Physical Review Letters | 2006 |
High nucleosome occupancy is encoded at human regulatory sequences | Desiree Tillo Noam Kaplan Irene K. Moore Yvonne Fondufe-Mittendorf Andrea J. Gossett Yair Field Jason D. Lieb Jonathan Widom Eran Segal Timothy R. Hughes | PLoS ONE | 2010 |
Maxwell's demon and quantum-dot cellular automata | John Timler Craig S. Lent | Journal of Applied Physics | 2003 |
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host | Winston Timp Andrew P. Feinberg | Nature Reviews Cancer | 2013 |
Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels | Sylvia C. Tippmann Robert Ivanek Dimos Gaidatzis Anne Schöler Leslie Hoerner Erik Van Nimwegen Michael B. Stadler Dirk Schübeler Peter Stadler | Molecular Systems Biology | 2012 |
Invertible cellular automata: A review | Tommaso Toffoli Norman H. Margolus | Physica D: Nonlinear Phenomena | 1990 |
Measuring information integration | Giulio Tononi Olaf Sporns | BMC Neuroscience | 2003 |
Consciousness as integrated information: A provisional manifesto | Giulio Tononi | Biological Bulletin | 2008 |
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The neural correlates of consciousness: An update | Giulio Tononi Christof Koch | Annals of the New York Academy of Sciences | 2008 |
An information integration theory of consciousness | Giulio Tononi | BMC Neuroscience | 2004 |
Mutual information between input and output trajectories of biochemical networks | Filipe Tostevin Pieter Rein ten Wolde | Physical Review Letters | 2009 |
The large deviation approach to statistical mechanics | Hugo Touchette | Physics Reports | 2009 |
Information-theoretic approach to the study of control systems | Hugo Touchette Seth Lloyd | Physica A: Statistical Mechanics and its Applications | 2004 |
Recovery of state-specific potential of molecular motor from single-molecule trajectory | Shoichi Toyabe Hiroshi Ueno Eiro Muneyuki | EPL | 2012 |
Nonequilibrium energetics of a single F1-ATPase molecule | Shoichi Toyabe Tetsuaki Okamoto Takahiro Watanabe-Nakayama Hiroshi Taketani Seishi Kudo Eiro Muneyuki | Physical Review Letters | 2010 |
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality | Shoichi Toyabe Takahiro Sagawa Masahito Ueda Eiro Muneyuki Masaki Sano | Nature Physics | 2010 |
Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution | Vuong Tran Cindy Lim Jing Xie Xin Chen | Science | 2012 |
Pseudorandomness and average-case complexity via uniform reductions | Luca Trevisan Salil Vadhan | Computational Complexity | 2007 |
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Stochastic signal processing and transduction in chemotactic response of eukaryotic cells | Masahiro Ueda Tatsuo Shibata | Biophysical Journal | 2007 |
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On Some New Families of Almost Difference Sets Constructed From Cyclotomic Classes of Order 12 | ... | ||
Reverse Update: A Consistent Policy Update Scheme for Software-Defined Networking | ... | ||
Addressing the wicked problem of quality in higher education: theoretical approaches and implications | ... | ||
Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme | ... | ||
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Principles of neural information theory | James V Stone | 2018 | |
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The unified theory of pseudorandomness: guest column | Salil Vadhan | ACM SIGACT News | 2007 |
Escorted free energy simulations: Improving convergence by reducing dissipation | Suriyanarayanan Vaikuntanathan Christopher Jarzynski | Physical Review Letters | 2008 |
Dissipation and lag in irreversible processes | S. Vaikuntanathan C. Jarzynski | EPL | 2009 |
Modeling Maxwell's demon with a microcanonical Szilard engine | Suriyanarayanan Vaikuntanathan Christopher Jarzynski | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2011 |
Physical Responses of Bacterial Chemoreceptors | Ady Vaknin Howard C. Berg | Journal of Molecular Biology | 2007 |
Stochastic thermodynamics for linear kinetic equations | C. Van Den Broeck R. Toral | Physical Review E - Statistical, Nonlinear, and Soft Matter Physics | 2015 |
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The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network | N. M. Van Strien M. P. Witter N. L.M. Cappaert | Nature Reviews Neuroscience | 2009 |
Diffusion of transcription factors can drastically enhance the noise in gene expression | Jeroen S. Van Zon Marco J. Morelli Sorin Tǎnase-Nicola Pieter Rein ten Wolde | Biophysical Journal | 2006 |
Networks, dynamics, and modularity | Evan A. Variano Jonathan H. McCoy Hod Lipson | Physical review letters | 2004 |
Structural properties of the Caenorhabditis elegans neuronal network | Lav R. Varshney Beth L. Chen Eric Paniagua David H. Hall Dmitri B. Chklovskii | PLoS Computational Biology | 2011 |
An information-theoretic equality implying the Jarzynski relation | Vlatko Vedral | Journal of Physics A: Mathematical and Theoretical | 2012 |
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes | S. Velasco A. Medina A. Calvo Hernandez J. M.M. Roco | Journal of Physics D: Applied Physics | 2001 |
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Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states | Gatien Verley Raphaël Chétrite David Lacoste | Physical Review Letters | 2012 |
Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain | Gatien Verley Raphaël Chétrite David Lacoste | Journal of Statistical Mechanics: Theory and Experiment | 2011 |
Experimental test of environment-assisted invariance | L. Vermeyden X. Ma J. Lavoie M. Bonsma U. Sinha R. Laflamme K. J. Resch | Physical Review A - Atomic, Molecular, and Optical Physics | 2015 |
Modelling dynamical processes in complex socio-technical systems | Alessandro Vespignani | Nature Physics | 2012 |
Failure of the work-hamiltonian connection for free-energy calculations | J. Miguel Rubi Jose M.G. Vilar | Physical Review Letters | 2008 |
On anomalous diffusion and the out of equilibrium response function in one-dimensional models | D. Villamaina A. Sarracino G. Gradenigo A. Puglisi A. Vulpiani | Journal of Statistical Mechanics: Theory and Experiment | 2011 |
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