Template:Reference Material Query
From Thermodynamics of Computation
- A "fast growth" method of computing free energy differences ,
- A (sub)graph isomorphism algorithm for matching large graphs 26, 1367-1372 (2004)
- A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling 37, 1441-1447 (2002)
- A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic ,
- A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory 137, 308-320 (2009)
- A Cost / Speed / Reliability Trade-off in Erasing a Bit , (2015)
- A DNA-fuelled molecular machine made of DNA 406, 605-608 (2000)
- A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics ,
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes 146, 294-313 (2012)
- A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering 24, 219-250 (2014)
- A Kilobit Special Number Field Sieve Factorization ,
- A Map of the Interactome Network of the Metazoan C. elegans 303, 540-543 (2004)
- A Nonequilibrium Extension of the Clausius Heat Theorem 154, 188-203 (2014)
- A Note on Bennett’s Time-Space Tradeoff for Reversible Computation ,
- A Parallel Repetition Theorem ,
- A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes ,
- A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs ,
- A Sampling of the Yeast Proteome ,
- A Simple Histone Code Opens Many Paths to Epigenetics 8, (2012)
- A Simple Model of Optimal Population Coding for Sensory Systems 10, (2014)
- A Survey of Techniques for Approximate Computing ,
- A bound particle coupled to two thermostats 2011, (2011)
- A complete problem for statistical zero knowledge ,
- A complexity measure for selective matching of signals by the brain ,
- A complexity theoretic approach to randomness ,
- A cost/speed/reliability tradeoff to erasing 9252, 192-201 (2015)
- A fast and elitist multiobjective genetic algorithm: NSGA-II 6, 182-197 (2002)
- A fast quantum mechanical algorithm for database search ,
- A field-theoretic approach to non-equilibrium work identities 44, (2011)
- A fluctuation theorem for currents and non-linear response coefficients , (2007)
- A fluctuation theorem for non-equilibrium relaxational systems driven by external forces , 315-365 (2005)
- A general framework for non-equilibrium phenomena: The master equation and its formal consequences 229, 347-353 (1997)
- A general method for numerically simulating the stochastic time evolution of coupled chemical reactions 22, 403-434 (1976)
- A general model for ontogenetic growth 413, 628-631 (2001)
- A general model for the origin of allometric scaling laws in biology ,
- A general model for the structure and allometry of plant vascular systems 400, 664-667 (1999)
- A general purpose RNA-cleaving DNA enzyme ,
- A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation 3, 25-42 (1989)
- A generalized integral fluctuation theorem for general jump processes 42, (2009)
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks 51, 2401-2422 (2013)
- A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb 339, 698-699 (2013)
- A master equation description of local fluctuations 13, 197-217 (1975)
- A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium 305, 542-552 (2002)
- A mathematical theory of communication ,
- A measure for brain complexity: relating functional segregation and integration in the nervous system. ,
- A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy 48, 1063-1067 (2002)
- A model for transmission of the H3K27me3 epigenetic mark 10, 1291-1300 (2008)
- A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli 6, (2010)
- A molecular information ratchet 445, 523-527 (2007)
- A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares ,
- A new notation for quantum mechanics 35, 416-418 (1939)
- A new polynomial-time algorithm for linear programming 4, 373-395 (1984)
- A note on monte carlo primality tests and algorithmic information theory 31, 521-527 (1978)
- A note on the Jarzynski equality ,
- A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries ,
- A possible classification of nonequilibrium steady states 39, (2006)
- A quantitative analysis of sniffing strategies in rats performing odor detection tasks 41, 59-69 (1987)
- A quantitative comparison of sRNA-based and protein-based gene regulation 4, (2008)
- A quantitative estimation of the global translational activity in logarithmically growing yeast cells 2, (2008)
- A reconfigurable stochastic architecture for highly reliable computing ,
- A rigorous derivation of the chemical master equation 188, 404-425 (1992)
- A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats. ,
- A simple coding procedure enhances a neuron’s information capacity 36, 910-912 (1981)
- A simple population protocol for fast robust approximate majority 21, 87-102 (2008)
- A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions 19, 3001-3010 (2009)
- A simple theory of motor protein kinetics and energetics. II 83, 35-43 (2000)
- A small world of neuronal synchrony 18, 2891-2901 (2008)
- A spectral transform approach to stochastic circuits , 315-321 (2012)
- A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic , 303-308 (2012)
- A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms 55, 551-561 (2008)
- A synthetic oscillatory network of transcriptional regulators 403, 335-338 (2000)
- A systems perspective on early olfactory coding 286, 723-728 (1999)
- A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension , (2007)
- A tension-based theory of morphogenesis and compact wiring in the central nervous system 385, 313-318 (1997)
- A test of metabolically efficient coding in the retina 13, 531-552 (2002)
- A theory of the learnable ,
- A universal scaling law between gray matter and white matter of cerebral cortex. ,
- A yeast protein similar to bacterial two-component regulators. ,
- ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity ,
- ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light 18, 1917-1921 (2008)
- ATP-dependent mechanics of red blood cells ,
- Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis ,
- Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease ,
- Accuracy of direct gradient sensing by cell-surface receptors 100, 33-39 (2009)
- Active membrane fluctuations studied by micropipet aspiration 64, 10 (2001)
- Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments 7, (2011)
- Addressing the wicked problem of quality in higher education: theoretical approaches and implications ,
- Adipose tissue in human infancy and childhood: An evolutionary perspective 41, 177-209 (1998)
- Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics 45, 3307-3316 (2006)
- Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation ,
- Aerobic glycolysis in the human brain is associated with development and neotenous gene expression 19, 49-57 (2014)
- Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance 219, 1149-1167 (2014)
- Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI 56, 235-245 (2011)
- Age-related changes in modular organization of human brain functional networks 44, 715-723 (2009)
- Algebraic methods in the theory of lower bounds for Boolean circuit complexity ,
- Algorithmic Self-Assembly of DNA Sierpinski Triangles ,
- Algorithmic randomness and physical entropy 40, 4731-4751 (1989)
- Alternative splicing in the nervous system: An emerging source of diversity and regulation 54, 771-776 (2003)
- Amorphous computing 9781461418009, 147-160 (2012)
- Amplification and adaptation in regulatory and sensory systems ,
- An Energy Budget for Signaling in the Grey Matter of the Brain ,
- An Energy Budget for the Olfactory Glomerulus ,
- An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation 71, 1065-1066 (2002)
- An Introduction to Kolmogorov Complexity and Its Applications , (2008)
- An O(log n log log n) Space Algorithm for Undirected st-connectivity ,
- An amplified sensitivity arising from covalent modification in biological systems. ,
- An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions 16, 212-228 (1967)
- An analysis of selected computer interchange color spaces ,
- An analytical solution to the kinetics of breakable filament assembly 326, 1533-1537 (2009)
- An architecture for fault-tolerant computation with stochastic logic 60, 93-105 (2011)
- An autonomous and reversible Maxwell's demon 101, (2013)
- An effect of DNA sequence on nucleosome occupancy and removal 18, 507-509 (2011)
- An efficient 10GBASE-T ethernet LDPC decoder design with low error floors 45, 843-855 (2010)
- An efficient graph theory based method to identify every minimal reaction set in a metabolic network 8, (2014)
- An estimate of the total DNA in the biosphere 13, 1-10 (2015)
- An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions 48, 386-390 (2009)
- An experimental test of the Jarzynski equality in a mechanical experiment 70, 593-599 (2005)
- An information integration theory of consciousness 5, (2004)
- An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle 11, 289-295 (2012)
- An information-theoretic equality implying the Jarzynski relation 45, (2012)
- An informational process based on reversible universal cellular automata 45, 254-270 (1990)
- An intermediate level of abstraction for computational systems chemistry 16, 510-523 (2019)
- An introduction to population protocols , 97-120 (2009)
- An introduction to thermodynamics and statistical mechanics ,
- An update on the nonequilibrium linear response 15, (2013)
- Analog Computation by DNA Strand Displacement Circuits 5, 898-912 (2016)
- Analog Versus Digital: Extrapolating from Electronics to Neurobiology ,
- Analog synthetic biology ,
- Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits , 739-745 (2010)
- Analyzing friction forces with the Jarzynski equality 20, (2008)
- Analyzing molecular reaction networks: From pathways to chemical organizations 34, 117-123 (2006)
- Another proof of Gell-Mann and Low's theorem 48, (2007)
- Application of Boolean Algebra to Switching Circuit Design and to Error Detection ,
- Application of importance sampling to the computation of large deviations in nonequilibrium processes 83, (2011)
- Application-level correctness and its impact on fault tolerance , 181-192 (2007)
- ApproxMA: Approximate Memory Access for Dynamic Precision Scaling ,
- Approximate computing: An emerging paradigm for energy-efficient design , (2013)
- Approximate counting, uniform generation and rapidly mixing Markov chains 82, 93-133 (1989)
- Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network 6, 1109-1118 (1995)
- Are Recursion Theoretic Arguments Useful in Complexity Theory? 114, 141-158 (1986)
- Argonaute proteins couple chromatin silencing to alternative splicing 19, 998-1005 (2012)
- Article for analog vector algebra computation 52, 175-180 (1999)
- Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements 4, (2014)
- Astrocytes Couple Synaptic Activity to Glucose Utilization in the Brain. ,
- Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution 338, 679-682 (2012)
- Asymmetrically modified nucleosomes 151, 181-193 (2012)
- Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic , 177-182 (1994)
- Asymptotics of work distributions in nonequilibrium systems 80, (2009)
- Asynchronous computation with molecular reactions , 493-497 (2011)
- Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study 33, 6100-6109 (1994)
- Average Case Complete Problems ,
- Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation ,
- BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study 33, 929-937 (2009)
- BPP and the polynomial hierarchy 17, 215-217 (1983)
- BRAIN WORK AND BRAIN IMAGING ,
- Bacterial chemoreceptors: high-performance signaling in networked arrays 33, 9-19 (2008)
- Bacterial computing with engineered populations ,
- Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states 414, 624-637 (2011)
- Basal Metabolic Rate in Man 17, 137-143 (1981)
- Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise 129, (2008)
- Bayesian integration in sensorimotor learning 427, 244-247 (2004)
- Best-effort computing: Re-thinking parallel software and hardware ,
- Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome , 518-527 (2010)
- Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements ,
- Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? 109, 6902-6915 (2005)
- Bidirectional single-electron counting and the fluctuation theorem 81, (2010)
- Binary Multiplication with PN Sequences 36, 603-606 (1988)
- Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer. ,
- Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) 40, 1765-1773 (2000)
- Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors 99, 25-44 (2003)
- Biological solutions to transport network design ,
- Biomolecules under mechanical force 486, 1-74 (2010)
- Biorthogonal quantum mechanics 47, (2014)
- Body Composition and Energy Needs during Growth ,
- Body size and metabolic rate. ,
- Bona fide stochastic resonance: A view point from stochastic energetics 345, 404-410 (2005)
- Boundary layers in stochastic thermodynamics 85, (2012)
- Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines 98, (2012)
- Brain Graphs: Graphical Models of the Human Brain Connectome ,
- Brain anatomical network and intelligence 5, (2009)
- Brain and body oxygen requirements of Gnathonemus petersii, a fish with an exceptionally large brain ,
- Brain growth, life history, and cognition in primate and human evolution 62, 139-164 (2004)
- Breaking DES Using a Molecular Computer ,
- Broadband Criticality of Human Brain Network Synchronization ,
- Broken symmetries and the masses of gauge bosons 13, 508-509 (1964)
- Brownian motion: A paradigm of soft matter and biological physics 14, 20-50 (2005)
- Brownian motors: Noisy transport far from equilibrium 361, 57-265 (2002)
- Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium ,
- Building programmable jigsaw puzzles with RNA 306, 2068-2072 (2004)
- CNS energy metabolism as related to function 34, 42-68 (2000)
- CREW PRAMs and Decision Trees ,
- CURRENT OPINION IN STRUCTURAL BIOLOGY ,
- Calcium signalling and regulation in olfactory neurons 9, 419-426 (1999)
- Calcium, the two-faced messenger of olfactory transduction and adaptation 13, 469-475 (2003)
- Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality 124, (2006)
- Calculating potentials of mean force from steered molecular dynamics simulations. ,
- Calculating source line level energy information for Android applications ,
- Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host 13, 497-510 (2013)
- Cell Type-Specific Tuning of Hippocampal Interneuron Firing during Gamma Oscillations In Vivo ,
- Cellular energy utilization and molecular origin of standard metabolic rate in mammals ,
- Cellular stoichiometry of the components of the chemotaxis signaling complex 186, 3687-3694 (2004)
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing 21, 1121-1131 (2002)
- Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation 11, 2621-2634 (1999)
- Cerebellar LTD and Pattern Recognition by Purkinje Cells 54, 121-136 (2007)
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity 39, 7415-7427 (2011)
- Challenges for complexity measures: A perspective from social dynamics and collective social computation 21, (2011)
- Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights 4, 345-356 (1978)
- Channel noise in neurons 23, 131-137 (2000)
- Characterization of Minimum Error Linear Coding with Sensory and Neural Noise ,
- Characterization of the RNA content of chromatin 20, 899-907 (2010)
- Characterization of the anterior cingulate's role in the at-risk mental state using graph theory ,
- Characterizing plastic depinning dynamics with the fluctuation theorem 34, 117 (2011)
- Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life. 17 supl., 9-16 (1963)
- Chemical Reaction Networks for Computing Polynomials 6, 76-83 (2017)
- Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms 17, (2005)
- Chemical implementation of finite-state machines ,
- Chemical implementation of neural networks and Turing machines ,
- Chemical kinetics is turing universal 78, 1190-1193 (1997)
- Chemical reaction network theory for in-silico biologists 138, 1-26 (2003)
- Chemical sensing by nonequilibrium cooperative receptors 110, (2013)
- Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions 130, 39-67 (2008)
- Chemotaxis in Escherichia coli analysed by three-dimensional tracking 239, 500-504 (1972)
- Childhood and the evolution of the human life course: An Introduction ,
- Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription ,
- Chromatin and epigenetic regulation of pre-mrna processing 21, (2012)
- Chromatin computation 7, (2012)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels 8, (2012)
- Chromatin organization marks exon-intron structure 16, 990-995 (2009)
- Chromatin proteins: Key responders to stress 10, 7 (2012)
- Chromatin structure and the inheritance of epigenetic information 11, 285-296 (2010)
- Circulation and Energy Metabolism of the Brain. ,
- Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise 86, (2009)
- Classical and quantum fluctuation theorems for heat exchange 92, (2004)
- Classical and quantum limitations on energy consumption in computation 21, 311-326 (1982)
- Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality 84, (2011)
- Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty 51, 170-179 (1976)
- Closed-loop control strategy with improved current for a flashing ratchet 71, 536-541 (2005)
- Coding Efficiency and the Metabolic Cost of Sensory and Neural Information ,
- Coding of Odors by a Receptor Repertoire 125, 143-160 (2006)
- Cognitive Effort Drives Workspace Configuration of Human Brain Functional Networks ,
- Cognitive fitness of cost-efficient brain functional networks ,
- Collective dynamics of 'small-world' networks 393, 440-442 (1998)
- Colloquium: The physics of Maxwell's demon and information 81, 1-23 (2009)
- Combinatorial Problems and Exercises ,
- Combinatorial complexity in chromatin structure and function: Revisiting the histone code 22, 148-155 (2012)
- Combinatorial complexity of pathway analysis in metabolic networks. ,
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums 52, 1189-1192 (2013)
- Combinatorial readout of dual histone modifications by paired chromatin-associated modules 286, 18363-18368 (2011)
- Combined analog and action potential coding in hippocampal mossy fibers 311, 1290-1293 (2006)
- Comment on "Failure of the work-Hamiltonian connection for free-energy calculations" by Jose M. G. Vilar and J. Miguel Rubi ,
- Communication in neuronal networks 301, 1870-1874 (2003)
- Communication lower bounds using directional derivatives ,
- Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? 132, (2010)
- Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid 95, 5948-5952 (1991)
- Comparison of a hair bundle's spontaneous oscillations with its response to mechanical stimulation reveals the underlying active process ,
- Comparison of far-from-equilibrium work relations 8, 495-506 (2007)
- Comparison of work fluctuation relations 2007, (2007)
- Compartmental organization of the olfactory bulb glomerulus 407, 261-274 (1999)
- Compendium of the Foundations of Classical Statistical Physics , 923-1074 (2007)
- Compiler optimization on instruction scheduling for low power 2000-January, 55-60 (2000)
- Complex Extension of Quantum Mechanics 89, (2002)
- Complex and detailed balancing of chemical reaction networks revisited 53, 1445-1458 (2015)
- Complex brain networks: graph theoretical analysis of structural and functional systems ,
- Complex network measures of brain connectivity: Uses and interpretations 52, 1059-1069 (2010)
- Complex parameter landscape for a complex neuron model 2, 0794-0804 (2006)
- Complexity, entropy and the physics of information ,
- Component-placement optimization in the brain 19, 413-415 (1996)
- Computation in networks of passively mobile finite-state sensors 18, 235-253 (2006)
- Computation on stochastic bit streams digital image processing case studies 22, 449-462 (2014)
- Computation with finite stochastic chemical reaction networks 7, 615-633 (2008)
- Computational Complexity of Probabilistic Turing Machines ,
- Computational Complexity: A Modern Approach ,
- Computational complexity: a modern approach ,
- Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes 23, 1424-1433 (2005)
- Computational design of nucleic acid feedback control circuits 3, 600-616 (2014)
- Computational limits to binary genes. ,
- Computational selection of nucleic acid biosensors via a slip structure model 22, 1939-1947 (2007)
- Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury 103, 1229-1236 (2006)
- Computer simulation of Feynman's ratchet and pawl system 81, (2010)
- Computers and Intractability: a guide to NP-completeness ,
- Computing the optimal protocol for finite-time processes in stochastic thermodynamics 77, (2008)
- Computing with Noisy Information ,
- Conformational spread in a ring of proteins: A stochastic approach to allostery 308, 541-553 (2001)
- Connectivity optimization and the positioning of cortical areas ,
- Connectivity-driven white matter scaling and folding in primate cerebral cortex ,
- Consciousness as integrated information: A provisional manifesto 215, 216-242 (2008)
- Consensus paper: The cerebellum's role in movement and cognition 13, 151-177 (2014)
- Conservative logic 21, 219-253 (1982)
- Constrained maximal power in small engines 82, (2010)
- Construction and optimization of a quantum analog of the Carnot cycle 92, (2015)
- Construction of an in vitro bistable circuit from synthetic transcriptional switches 2, (2006)
- Continuous time controllers using digital programmable devices ,
- Control of DNA strand displacement kinetics using toehold exchange 131, 17303-17314 (2009)
- Convergence in the olfactory system: quantitative aspects of odour sensitivity 71, 39-48 (1978)
- Cooling classical particles with a microcanonical szilard engine 104, (2010)
- Cooperative binding of effectors by an allosteric ribozyme. ,
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain 461, 664-668 (2009)
- Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors 15, 3411-3418 (2009)
- Cooperativity, sensitivity, and noise in biochemical signaling 100, (2008)
- Coordination languages and their significance ,
- Correcting errors beyond the Guruswami-Sudan radius in polynomial time 2005, 285-294 (2005)
- Correlated evolution of nearby residues in drosophilid proteins 7, (2011)
- Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. 42, 68-91 (1969)
- Correlations Among Amino Acid Sites in bHLH Protein Domains: An Information Theoretic Analysis ,
- Cortical GABA Interneurons in Neurovascular Coupling: Relays for Subcortical Vasoactive Pathways ,
- Cortical Hubs Revealed by Intrinsic Functional Connectivity: Mapping, Assessment of Stability, and Relation to Alzheimer's Disease ,
- Cosmological experiments in superfluid helium? 317, 505-508 (1985)
- Costs of encephalization: the energy trade-off hypothesis tested on birds 51, 228-243 (2006)
- Could information theory provide an ecological theory of sensory processing? 22, 4-44 (2011)
- Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport 100, (2008)
- Covalent modifications of histones during mitosis and meiosis 8, 3688-3694 (2009)
- Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis. ,
- Covariation of residues in the homeodomain sequence family 4, 2269-2278 (1995)
- Criticism of Feynman’s analysis of the ratchet as an engine 64, 1125-1130 (1996)
- Crowding Effects on Diffusion in Solutions and Cells ,
- Cryptographic Limitations on Learning Boolean Formulae and Finite Automata ,
- Cube v4: From performance report explorer to performance analysis tool 51, 1343-1352 (2015)
- Curie's principle 21, 133-148 (1970)
- Current trends in finite-time thermodynamics 50, 2690-2704 (2011)
- Current, maximum power and optimized efficiency of a Brownian heat engine 38, 457-461 (2004)
- Cybernetics : Control and Communication in the Animal and the Machine --2nd. ed ,
- DNA COMPUTING ,
- DNA as a universal substrate for chemical kinetics (Extended Abstract) 5347 LNCS, 57-69 (2009)
- Darwinian demons, evolutionary complexity, and information maximization 21, (2011)
- Data Center Efficiency Assessment , 35 (2014)
- Decoherence, einselection, and the quantum origins of the classical 75, 715-775 (2003)
- Defect and error tolerance in the presence of massive numbers of defects 21, 216-227 (2004)
- Defining Network Topologies that Can Achieve Biochemical Adaptation 138, 760-773 (2009)
- Defining genes: A computational framework 128, 165-170 (2009)
- Delayed stochastic decoding of LDPC codes 59, 5617-5626 (2011)
- Demons, Engines and the Second Law ,
- Dendrosomatic voltage and charge transfer in rat neocortical pyramidal cells ,
- Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism 134, (2011)
- Dental and skeletal growth in early fossil hominins 36, 545-561 (2009)
- Dental evidence for ontogenetic differences between modern humans and Neanderthals ,
- Deoxyribozymes that recode sequence information 34, 2166-2172 (2006)
- Dependence of the fluctuation-Dissipation temperature on the choice of observable 103, (2009)
- Derandomizing polynomial identity tests means proving circuit lower bounds 13, 1-46 (2004)
- Derivation of quantum master equation with counting fields by monitoring a probe 82, (2010)
- Design and analysis of synthetic carbon fixation pathways. ,
- Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements 460, 78-88 (2012)
- Design of a Neuronal Array ,
- Design of a trichromatic cone array 6, (2010)
- Design principles of a bacterial signalling network 438, 504-507 (2005)
- Designing logic circuits for probabilistic computation in the presence of noise ,
- Designing optimal discrete-feedback thermodynamic engines 13, (2011)
- Detecting Activity in Olfactory Bulb Glomeruli with Astrocyte Recording ,
- Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex 234, 1084-1097 (1993)
- Determining cortical landscapes 386, 452 (1997)
- Deterministic Function Computation with Chemical Reaction Network 13, 517-534 (2014)
- Deterministic function computation with chemical reaction networks 13, 517-534 (2014)
- Development of Gap Junctions in Hippocampal Astrocytes: Evidence That Whole Cell Electrophysiological Phenotype Is an Intrinsic Property of the Individual Cell ,
- Development of large-scale functional brain networks in children 7, (2009)
- Dietary constraints on encephalization in primates 120, 171-181 (2003)
- Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis 29, 3484-3495 (2010)
- Differential Landauer's principle 101, (2013)
- Diffusion Tensor Tractography Reveals Abnormal Topological Organization in Structural Cortical Networks in Alzheimer's Disease ,
- Diffusion of transcription factors can drastically enhance the noise in gene expression 91, 4350-4367 (2006)
- Digital and analog gene circuits for biotechnology 9, 597-608 (2014)
- Digital genetics: Unravelling the genetic basis of evolution 7, 109-118 (2006)
- Digitalized Signatures and Public-Key Functions as Intractable as Factorization ,
- Directing reprogramming to pluripotency by transcription factors 22, 416-422 (2012)
- Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome 6577 LNBI, 53 (2011)
- Discriminatory proofreading regimes in nonequilibrium systems 4, (2014)
- Disjointness is hard in the multiparty number-on-the-forehead model 18, 309-336 (2009)
- Disrupted Modularity and Local Connectivity of Brain Functional Networks in Childhood-Onset Schizophrenia ,
- Disrupted axonal fiber connectivity in schizophrenia 69, 80-89 (2011)
- Disrupted small-world networks in schizophrenia 131, 945-961 (2008)
- Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers 43, 521-527 (2005)
- Dissipation Bound for Thermodynamic Control 115, (2015)
- Dissipation and lag in irreversible processes 87, (2009)
- Dissipation and noise immunity in computation and communication 335, 779-784 (1988)
- Dissipation-error tradeoff in proofreading 11, 85-91 (1979)
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome 39, 311-318 (2007)
- Distinctive features of dinoflagellate chromatin. Absence of nucleosomes in a primitive species Prorocentrum micans E. ,
- Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase 2, (2007)
- Distributed hierarchical processing in the primate cerebral cortex 1, 1-47 (1991)
- Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil 388, 191-210 (1997)
- Distribution of entropy production for a colloidal particle in a nonequilibrium steady state ,
- Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats 437, 617-623 (1999)
- Distribution of work in isothermal nonequilibrium processes 70, 4 (2004)
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator 6, 295-302 (2014)
- Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? 17, 987-997 (1995)
- Drivers of bacterial maintenance and minimal energy requirements 8, (2017)
- Dropbox Quick Start ,
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 23, 4286-4296 (2004)
- Dynamic DNA nanotechnology using strand-displacement reactions 3, 103-113 (2011)
- Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes 2009, (2009)
- Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation 2009, (2009)
- Dynamic mapping at the laminar level of odor-elicited responses in rat olfactory bulb by functional MRI. ,
- Dynamic reconfiguration of human brain networks during learning ,
- Dynamical consequences of lesions in cortical networks 29, 802-809 (2008)
- Dynamical ensembles in nonequilibrium statistical mechanics 74, 2694-2697 (1995)
- Dynamical fluctuations for periodically driven diffusions 2010, (2010)
- Dynamical reconnection and stability constraints on cortical network architecture 103, (2009)
- Dynamics and memory of heterochromatin in living cells 149, 1447-1460 (2012)
- Dynamics of a tracer granular particle as a nonequilibrium Markov process 73, (2006)
- Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. ,
- Dynamics of cooperativity in chemical sensing among cell-surface receptors 107, (2011)
- Dynamics of inherently bounded histone modification domains ,
- Dynamics of market correlations: Taxonomy and portfolio analysis 68, (2003)
- Dynamo: Amazon’s Highly Available Key-value Store ,
- ERSA: Error resilient system architecture for probabilistic applications 31, 546-558 (2012)
- Earliest evidence of modern human life history in North African early Homo sapiens. ,
- Early metazoan life: divergence, environment and ecology ,
- Earth mover's distance as a metric for image retrieval 40, 99-121 (2000)
- Easiness Assumptions and Hardness Tests: Trading Time for Zero Error 63, 236-252 (2001)
- Ecology and Energetics of Encephalization in Hominid Evolution ,
- Ecology, the Ascendent Perspective ,
- Effect of feedback on the fidelity of information transmission of time-varying signals 82, (2010)
- Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors 139, (2013)
- Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension 85, (2012)
- Effective temperature of active matter 77, (2008)
- Effective temperature of red-blood-cell membrane fluctuations 106, (2011)
- Effective temperatures in driven systems: Static versus time-dependent relations 93, (2004)
- Effective temperatures of a driven, strongly anisotropic Brownian system 83, (2011)
- Effective temperatures of a heated Brownian particle 94, (2011)
- Effects of reservoir squeezing on quantum systems and work extraction 86, (2012)
- Efficiencies of a molecular motor: a generic hybrid model applied to the F1-ATPase ,
- Efficiency and cost of economical brain functional networks 3, 0174-0183 (2007)
- Efficiency and fluctuation in tight-coupling model of molecular motor 75, (2006)
- Efficiency at Maximal Power of Minimal Nonlinear Irreversible Heat Engines ,
- Efficiency at maximum power of Feynman's ratchet as a heat engine 41, (2008)
- Efficiency at maximum power of thermally coupled heat engines ,
- Efficiency at maximum power output of linear irreversible Carnot-like heat engines 85, (2012)
- Efficiency at maximum power: An analytically solvable model for stochastic heat engines 81, (2008)
- Efficiency of Brownian motors in terms of entropy production rate 84, (2008)
- Efficiency of a Carnot engine at maximum power output 43, 22-24 (1975)
- Efficiency of autonomous soft nanomachines at maximum power 106, (2011)
- Efficiency of cellular information processing 16, (2014)
- Efficiency of free energy transduction in autonomous systems 80, (2011)
- Efficiency of functional brain networks and intellectual performance. ,
- Efficiency of information transmission by retinal ganglion cells ,
- Efficiency of molecular machines with continuous phase space ,
- Efficiency of molecular motors at maximum power 83, (2008)
- Efficient behavior of small-world networks 87, 198701-1-198701-4 (2001)
- Efficient checking of computations 415 LNCS, 207-215 (1990)
- Efficient extraction of free energy profiles from nonequilibrium experiments 30, 1726-1736 (2009)
- Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids 98, (2007)
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits 6, (2010)
- Efficient randomized pattern-matching algorithms ,
- Efficient turing-universal computation with DNA polymers 6518 LNCS, 123-140 (2011)
- Einstein relation generalized to nonequilibrium 98, (2007)
- Electromagnetic gauge-freedom and work 49, (2016)
- Electrophysiological and Morphological Amygdaloid Neurons in vitro Properties of Rat Basolateral ,
- Electrophysiological classes of cat primary visual cortical neurons in vivo as revealed by quantitative analyses. ,
- Electrophysiological properties of rat lateral parabrachial neurons in vitro ,
- Electrophysiology of interneurons in the glomerular layer of the rat olfactory bulb. ,
- Elements of Information Theory , 1-748 (2005)
- Elements of Information Theory 2nd Edition ,
- Emergent complex neural dynamics 6, 744-750 (2010)
- Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes 6, 459-470 (1960)
- End of Moore's law: Thermal (noise) death of integration in micro and nano electronics 305, 144-149 (2002)
- Energetic basis of brain activity: Implications for neuroimaging 27, 489-495 (2004)
- Energetic demand of multiple dependents and the evolution of slow human growth ,
- Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions 2010, (2010)
- Energetics and the Evolution of the Genus Homo ,
- Energetics and the evolution of human brain size 480, 91-93 (2011)
- Energetics of functional activation in neural tissues 24, 321-329 (1999)
- Energy Aware Computing Through Probabilistic Switching: A Study of Limits 54, 1123-1137 (2005)
- Energy Balance for Analysis of Complex Metabolic Networks ,
- Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation 18, 3486-3493 (1979)
- Energy Efficient Neural Codes ,
- Energy allocation between brain and body during ontogenetic development 25, 725-732 (2013)
- Energy as a constraint on the coding and processing of sensory information 11, 475-480 (2001)
- Energy aware computing through probabilistic switching: A study of limits 54, 1123-1137 (2005)
- Energy balance for analysis of complex metabolic networks. ,
- Energy conversion by molecular motors coupled to nucleotide hydrolysis 135, 951-975 (2009)
- Energy dissipation and noise correlations in biochemical sensing 113, (2014)
- Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems 73, (2006)
- Energy dissipation in an adaptive molecular circuit 2015, (2015)
- Energy efficient neural codes. ,
- Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics 55, 3898-3914 (1997)
- Energy flows in low-entropy complex systems 17, 8007-8018 (2015)
- Energy limitation as a selective pressure on the evolution of sensory systems ,
- Energy metabolism of rabbit retina as related to function: high cost of Na+ transport. ,
- Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations 82, (2010)
- Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium 60, 2127-2140 (1999)
- Energy use constrains brain information processing 75, 762-777 (2012)
- Energy-Efficient Information Transfer by Visual Pathway Synapses ,
- Energy-Efficient Sensing with the Low Power, Energy Aware Processing (LEAP) Architecture ,
- Energy-efficient action potentials in hippocampal mossy fibers. ,
- Energy-efficient neuronal computation via quantal synaptic failures. ,
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina 79, 2801-2817 (2000)
- Engineering complex riboswitch regulation by dual genetic selection 130, 16310-16315 (2008)
- Engineering precision RNA molecular switches ,
- Enhancing server availability and security through failure-oblivious computing ,
- Enstrophy dissipation in two-dimensional turbulence 72, (2005)
- Entropic tension in crowded membranes 8, (2012)
- Entropy Production in Nonequilibrium Systems at Stationary States ,
- Entropy Production of Brownian Macromolecules with Inertia ,
- Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States 142, 127-153 (2011)
- Entropy fluctuations in shell models of turbulence 67, 172-178 (2004)
- Entropy involved in fidelity of DNA replication 7, (2012)
- Entropy production along a stochastic trajectory and an integral fluctuation theorem 95, (2005)
- Entropy production and fluctuation relations for a KPZ interface 2010, (2010)
- Entropy production and fluctuation theorem along a stochastic limit cycle 129, (2008)
- Entropy production and fluctuation theorems under feedback control: The molecular refrigerator model revisited 2012, (2012)
- Entropy production and the arrow of time ,
- Entropy production as correlation between system and reservoir 12, (2010)... further results