Irreversible Processes in Ecological Evolution/JacopoGrilli
Notes by user Jacopo Grilli (ICTP) for Irreversible Processes in Ecological Evolution
1+ paragraphs on any combination of the following:
- Presentation highlights
- Open questions that came up
- How your perspective changed
- Impact on your own work
- e.g. the discussion on [A] that we are having reminds me of [B] conference/[C] initiative/[D] funding call-for-proposal/[E] research group
Connection between population dynamics and strain diversity. What is the response to pathogen intervention? (clear in a Chessonian framework, unclear when there is strong strain diversity). 1) Rotavirus. Robust antigenic diversity. Estimate of the parameters from cases: G-type strong specific immune response, P-type strong general immune response (concern: very few data, enough statistical power). Surprising: no effect of vaccine/intervention. 2) S. pneumonia. Frequency of strains. How does frequency change after intervention? Replicator model, predicted fitness from genes (how? Not clear): can predict frequencies after intervation (which again does not work). Questions: 1) what determines the equilibrium frequencies of genes? Why loci are under negative frequency negative dependent selection?
Stochastic open competitive communities. Niche/unique opportunities/deterministic forces vs chance/neutral/stochastic forces. Finding niche differences is a challenge. Stochastic Lotka-Volterra on 1dim niche axis . Cluster emerge. 1) Metric. What is a good measure of clustering and how is that affected by different mechanisms? 2) Data. BCI and regional pool.
Gipsy moth & virus/fungi. Inference of parameters from time-series. Key ingredient: variability of susceptibility between individuals. Works in reproducing data (but it is hard to predict)
Hyper-diversity of microbial communities. How do we interpret that diversity? Patches of organic matters (~detritus) are hotspots of diversity: multiple species are recruited. Lab experiment: biopolymers, 100 species. -Omics + culturing + phenotyping in order to recostruct dynamics. Observed successions (are true successions? Can also be explained by variability in growth/dilution rate). How succession depends on niche-breadth? Idea: niche breadth is bimodal (small niche breadth: early colonizers, specialized. Large niche breadth: late colonizers, cannot be grown in culture). He then looks at the metabolic networks: close to the central metabolism everything is more homogeneous, close to the periphery everything is more heterogenous (high variability in copy number). He then plots #of chitinases vs the # of coevolved modules. Early colonizers are high in both. Late colonizers are low in both. Free loaders have high # of coevolved modules but low #chitinases (can eat what free riders eat). Ecological dyanmics is consistent with this classification (degraders grow initially and then decay, cheaters and cross-feeders grow later)
Two facts: A) Microbiome is very diverse. B) Taxa is unstable, function is stable (robust patterns). Assumptions: 1) classical ecological models are inadequate for understanding ecosystems 2) large / diverse ecosystems are typically random. (Random) Chemostat model predicts many patterns. Why random works well? Above stability threshold random works very well.
1) Phenotypic traits are the interface between organisms and the environment 2) Evolution: (mutation+)contraints+selection 3) Irreversible processes arise from contraints. Different types of contraints: genetic (evolution acts only on heritable traits), energetic (tradeoffs), morphological (upper limits to evolutionary trajectories). Rest of the talk on how different traits depend on environment (Temperature). Two mechanism for reaction (to T variaton) norm: enzyme activation (monotonic response, e.g. mortality) and regulatory/hormonal (unimodal shape, e.g. eggs maturation) -> conserved across taxa.
Dervis Can Vural
OPEN DISCUSSION. 3 themes/questions
1) Identify quantities that are always increading or decreasing.
(side questions: why? At what scale (temporal, spatial, ...) do they have that trend?
Possible examples (in a Markov chain): return time (as a measure of irreversibility), turnover time, how often the system returns to the original state, fraction of trajectories that go from A->B vs from B->A.
Possible examples (interpretable quantities): # of species, biomass, # of limiting resources, # of niches, properties of resource consumption (e.g. efficiency), degree of specialization, interdependence, major (evolutionary) transitions
2) List of properties that we expect to be reversible/irreversible
Irreversible: oxygenation event (major transition), increase of specialization, latitudinal gradients, adaptive radiation, cluster formation
Debated: drift, mass exctintion (in what sense they are irreversible)
Reversible: function(?), total biomass (?)
3) (relevance of) transients
It depends on the timescale of evolution vs population dynamics.
Relevance of timescales: timescale of evolution, environmental change, behavior vs timescale of population/community dynamics
Relevant examples: patterns of extintions (position in transient determines outcomes), cycles ("always" in a transient)
Reference material notes
- Here is [A] database on [B] that I pull data from to do [C] analysis that might be of interest to this group (insert link).
- Here is a free tool for calculating [ABC] (insert link)
- This painting/sculpture/forms of artwork is emblematic to our discussion on [X]!
- Schwartz et al. 2017 offers a review on [ABC] migration as relate to climatic factors (add the reference as well).
Presenter on the following Agenda items
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