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	Author name	Source name	Year	Keyword	Citation count	Page views
An efficient 10GBASE-T ethernet LDPC decoder design with low error floors	Zhengya Zhang, Venkat Anantharam, Martin J. Wainwright, Borivoje Nikolić	IEEE Journal of Solid-State Circuits	2010	Error floors, Iterative decoder architecture, Low-density parity-check (LDPC) code, Message-passing decoding, Post-processing	115	3
Minimal energy requirements in communication	Rolf Landauer	Science	1996		115	1
Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina	Peter B. Detwiler, Sharad Ramanathan, Anirvan Sengupta, Boris I. Shraiman	Biophysical Journal	2000		114	0
Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI	Zhang J. Chen, Yong He, Pedro Rosa-Neto, Gaolang Gong, Alan C. Evans	NeuroImage	2011		114	0
Cerebellar LTD and Pattern Recognition by Purkinje Cells	Volker Steuber, Wolfgang Mittmann, Freek E. Hoebeek, R. Angus Silver, Chris I. De Zeeuw, Michael Häusser, Erik De Schutter	Neuron	2007	MOLNEURO, SYSBIO, SYSNEURO	113	0
Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates	S. Schuler, T. Speck, C. Tietz, J. Wrachtrup, Udo Seifert	Physical Review Letters	2005		113	1
Targeting olfaction	Peter Mombaerts	Current Opinion in Neurobiology	1996		112	0
Genetic networks: Small numbers of big molecules	Nina Fedoroff, Walter Fontana	Science	2002		111	2
Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?	Purnananda Guptasarma	BioEssays	1995		111	0
Diffusion of transcription factors can drastically enhance the noise in gene expression	Jeroen S. Van Zon, Marco J. Morelli, Sorin Tǎnase-Nicola, Pieter Rein ten Wolde	Biophysical Journal	2006		111	10
Mutual information between input and output trajectories of biochemical networks	Filipe Tostevin, Pieter Rein ten Wolde	Physical Review Letters	2009		111	6
Stochastic thermodynamics of chemical reaction networks	Tim Schmiedl, Udo Seifert	Journal of Chemical Physics	2007		111	9
Thermodynamics of prediction	Susanne Still, David A. Sivak, Anthony J. Bell, Gavin Crooks	Physical Review Letters	2012		110	14
The Stokes efficiency for molecular motors and its applications	Hongyun Wang, G. Oster	Europhysics Letters	2002		109	0
Fifty years of the VSEPR model	R. J. Gillespie	Coordination Chemistry Reviews	2008	LCP model: Lone pairs, Molecular geometry, VSEPR model	107	6
Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution	Vuong Tran, Cindy Lim, Jing Xie, Xin Chen	Science	2012		107	1
A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms	Da Zhang, Hui Li	IEEE Transactions on Industrial Electronics	2008	Antiwindup proportional-integral (PI) controller, Field-programmable gate array (FPGA), Induction motor drive, Motor drive control, Neural network (NN) algorithms, Stochastic theory, Very high speed integrated circuit (VHSIC) hardware description language (VHDL)	107	8
Principles underlying mammalian neocortical scaling	Mark A. Changizi	Biological Cybernetics	2001		107	0
Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain	Marta Rivera-Alba, Shiv N. Vitaladevuni, Yuriy Mischenko, Zhiyuan Lu, Shin Ya Takemura, Lou Scheffer, Ian A. Meinertzhagen, Dmitri B. Chklovskii, Gonzalo G. De Polavieja	Current Biology	2011		107	0
Steady state thermodynamics	Y Oono, Paniconi M 1998	Theor. Phys. Suppl	2006	Fluctuation, Nonequilibrium steady state, Thermodynamics	107	1
A fluctuation theorem for currents and non-linear response coefficients	David Andrieux, Pierre Gaspard	Journal of Statistical Mechanics: Theory and Experiment	2007	Current fluctuations, Exact results, Stationary states (theory)	106	6
Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics	Hao Ge, Min Qian, Hong Qian	Physics Reports	2012	Bistability, Enzyme kinetics, Fluctuating enzyme, Gene regulatory network, Kinetic proofreading, Signaling network, Zeroth-order ultrasensitivity	106	4
Universal features in the energetics of symmetry breaking	É Roldán, I. A. Martínez, J. M.R. Parrondo, D. Petrov	Nature Physics	2014		106	2
Multivariate information transmission	William J. McGill	IRE Professional Group on Information Theory	1954		105	3
Patterns and mechanisms of Ancestral Histone protein inheritance in Budding yeast	Marta Radman-Livaja, Kitty F. Verzijlbergen, Assaf Weiner, Tibor van Welsem, Nir Friedman, Oliver J. Rando, Fred van Leeuwen	PLoS Biology	2011		105	0
Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements	Amar Nath Gupta, Abhilash Vincent, Krishna Neupane, Hao Yu, Feng Wang, Michael T. Woodside	Nature Physics	2011		104	0
Histone H3 tail clipping regulates gene expression	Helena Santos-Rosa, Antonis Kirmizis, Christopher Nelson, Till Bartke, Nehme Saksouk, Jacques Cote, Tony Kouzarides	Nature Structural and Molecular Biology	2009		104	0
Application-level correctness and its impact on fault tolerance	Xuanhua Li, Donald Yeung	Proceedings - International Symposium on High-Performance Computer Architecture	2007		104	0
Maxwell's demon assisted thermodynamic cycle in superconducting quantum circuits	H. T. Quan, Y. D. Wang, Yu Xi Liu, C. P. Sun, Franco Nori	Physical Review Letters	2006		104	0
Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation	Ara Kocharyan, Priscilla Fernandes, Xin Kang Tong, Elvire Vaucher, Edith Hamel	Journal of Cerebral Blood Flow and Metabolism	2008	Cerebral blood vessel, Cholinergic lesion, Cortical interneuron, Hemodynamic response, Inhibitory interneuron, Microvessel	104	0
Stochastic signal processing and transduction in chemotactic response of eukaryotic cells	Masahiro Ueda, Tatsuo Shibata	Biophysical Journal	2007		103	0
Grid cells generate an analog error-correcting code for singularly precise neural computation	Sameet Sreenivasan, Ila Fiete	Nature Neuroscience	2011		103	1
Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation	Bart P. Vos, Antonia Volny-Luraghi, Erik De Schutter	European Journal of Neuroscience	1999	Cerebellum, Inhibitory interneurons, Mossy fibre, Parallel fibre, Somatosensory system, Trigeminal stimulation	103	0
Efficiency of autonomous soft nanomachines at maximum power	Udo Seifert	Physical Review Letters	2011		103	1
Feedback control in a collective flashing ratchet	Francisco J. Cao, Luis Dinis, Juan M.R. Parrondo	Physical Review Letters	2004		102	0
A new notation for quantum mechanics	P. A.M. Dirac	Mathematical Proceedings of the Cambridge Philosophical Society	1939		102	6
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis	Robert H. Wood, Wolfgang C.F. Mühlbauer, Peter T. Thompson	Journal of Physical Chemistry	1991		102	3
The chromatin code of fungal secondary metabolite gene clusters	Agnieszka Gacek, Joseph Strauss	Applied Microbiology and Biotechnology	2012	Aspergillus, Chromatin, Histone modifications, Secondary metabolism	101	0
Classical and quantum limitations on energy consumption in computation	K. K. Likharev	International Journal of Theoretical Physics	1982		100	3
Delayed stochastic decoding of LDPC codes	Ali Naderi, Shie Mannor, Mohamad Sawan, Warren J. Gross	IEEE Transactions on Signal Processing	2011	Delayed stochastic decoding, iterative decoding, low-density parity-check code, stochastic decoding	100	3
Relationship between subsistence and age at weaning in "preindustrial" societies	Daniel W. Sellen, Diana B. Smay	Human Nature	2001	Agriculture, Breastfeeding, Childcare, Comparative method, Cross-cultural studies, Cultural evolution, Horticulture, Hunter-gatherers, Pastoralists, Weanling's dilemma, Women's work	100	0
Extracting work from a single heat bath through feedback	D. Abreu, Udo Seifert	EPL	2011		100	3
Calcium, the two-faced messenger of olfactory transduction and adaptation	Hugh R. Matthews, Johannes Reisert	Current Opinion in Neurobiology	2003		99	0
Calcium signalling and regulation in olfactory neurons	Anna Menini	Current Opinion in Neurobiology	1999		99	0
Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State	J. R. Gomez-Solano, A. Petrosyan, S. Ciliberto, R. Chetrite, K. Gawȩdzki	Physical Review Letters	2009		99	0
Programmable energy landscapes for kinetic control of DNA strand displacement	Thomas E. Ouldridge, Jonathan Bath, Andrew J. Turberfield, Robert R.F. Machinek, Natalie E.C. Haley	Nature Communications	2014		98	0
Stochasticity of gene products from transcriptional pulsing	Srividya Iyer-Biswas, F. Hayot, C. Jayaprakash	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		98	1
Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints	Anirikh Chakrabarti, Ljubisa Miskovic, Keng Cher Soh, Vassily Hatzimanikatis	Biotechnology Journal	2013	Elasticity, Mass action, Saturation, Stability, Thermodynamics	97	0
Chemical kinetics is turing universal	Marcelo O. Magnasco	Physical Review Letters	1997		97	1
Local potential connectivity in cat primary visual cortex	Armen Stepanyants, Judith A. Hirsch, Luis M. Martinez, Zoltán F. Kisvárday, Alex S. Ferecskó, Dmitri B. Chklovskii	Cerebral Cortex	2008	Excitatory, Inhibitory, Interlaminar connectivity, Morphology, Neurogeometry	96	0
Work fluctuations for a Brownian particle between two thermostats	Paolo Visco	Journal of Statistical Mechanics: Theory and Experiment	2006	Stochastic particle dynamics (theory)	96	0
The Berry phase and the pump flux in stochastic chemical kinetics	N. A. Sinitsyn, I. Nemenman	EPL	2007		96	0
Observable dependence of fluctuation-dissipation relations and effective temperatures	Suzanne Fielding, Peter Sollich	Physical Review Letters	2002		96	0
Efficiency of cellular information processing	Andre C. Barato, David Hartich, Udo Seifert	New Journal of Physics	2014	cellular sensing, nonequilibrium processes, thermodynamics and information	95	2
Fuzzy Memoization for Floating-Point Multimedia Applications	Carlos Alvarez, Jesús Corbal, Mateo Valero	IEEE Transactions on Computers	2005	Low-power design, real-time and embedded systems, special-purpose and application-based, systems	94	2
Methods for quantifying the informational structure of sensory and motor data	Max Lungarella, Teresa Pegors, Daniel Bulwinkle, Olaf Sporns	Neuroinformatics	2005	Embodiment, Information self-structuring, Sensorimotor coordination	94	0
What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders?	Alex Fornito, Edward T. Bullmore	Current Opinion in Psychiatry	2010	Connectivity, Default mode, Endogenous, Networks, Oscillations	94	0
Global and regional brain metabolic scaling and its functional consequences	Jan Karbowski	BMC Biology	2007		94	14
Predictive information and explorative behavior of autonomous robots	N. Ay, N. Bertschinger, R. Der, F. Güttler, E. Olbrich	European Physical Journal B	2008		93	2
Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis	Aaron Fluitt, Elsje Pienaar, Hendrik Viljoen	Computational Biology and Chemistry	2007	Mistranslation frequencies, Ribosome kinetics, Translation, tRNA availability	92	0
Maxwell's demon and quantum-dot cellular automata	John Timler, Craig S. Lent	Journal of Applied Physics	2003		92	1
Single-ensemble nonequilibrium path-sampling estimates of free energy differences	F. Marty Ytreberg, Daniel M. Zuckerman	Journal of Chemical Physics	2004		92	0
Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold	Bella Shlyahovsky, Yang Li, Oleg Lioubashevski, Johann Elbaz, Itamar Willner	ACS Nano	2009	Aptamer, DNA, DNAzyme, Logic gate, Nanomedicine, Thrombin	91	2
The synthesis of robust polynomial arithmetic with stochastic logic	Weikang Qian, Marc D. Riedel	Proceedings - Design Automation Conference	2008	Polynomial arithmetic, Probabilistic logic, Stochastic logic	91	1
Stoichiometric network theory for nonequilibrium biochemical systems	Hong Qian, Daniel A. Beard, Shou Dan Liang	European Journal of Biochemistry	2003	Biochemical network, Chemical potential, Flux, Nonequilibrium thermodynamics, Steady-state	91	1
Sensory-Evoked Intrinsic Optical Signals in the Olfactory Bulb Are Coupled to Glutamate Release and Uptake	Hirac Gurden, Naoshige Uchida, Zachary F. Mainen	Neuron	2006	MOLNEURO, SIGNALING, SYSNEURO	91	0
Effects of reservoir squeezing on quantum systems and work extraction	X. L. Huang, Tao Wang, X. X. Yi	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		91	0
A quantitative estimation of the global translational activity in logarithmically growing yeast cells	Tobias von der Haar	BMC Systems Biology	2008		90	0
The Value of Information for Populations in Varying Environments	Olivier Rivoire, Stanislas Leibler	Journal of Statistical Physics	2011	Branching processes, Control, Fitness, Information, Investment, Population dynamics, Regulation	89	1
The berg-purcell limit revisited	Kazunari Kaizu, Wiet De Ronde, Joris Paijmans, Koichi Takahashi, Filipe Tostevin, Pieter Rein ten Wolde	Biophysical Journal	2014		89	3
Stochastic thermodynamics of bipartite systems: Transfer entropy inequalities and a Maxwell's demon interpretation	D. Hartich, A. C. Barato, Udo Seifert	Journal of Statistical Mechanics: Theory and Experiment	2014	exact results	89	4
The Effect of Phenobarbitone Anaesthesia on Blood Flow and Oxygen Consumption in the Rat Brain	Lorentz Nilsson, Bo K. Siesjó	Acta Anaesthesiologica Scandinavica	1975		89	0
Effective temperature of red-blood-cell membrane fluctuations	Eyal Ben-Isaac, Yongkeun Park, Gabriel Popescu, Frank L.H. Brown, Nir S. Gov, Yair Shokef	Physical Review Letters	2011		89	0
Measurement of stochastic entropy production	C. Tietz, S. Schuler, T. Speck, J. Wrachtrup, Udo Seifert	Physical Review Letters	2006		88	1
Heat generation required by information erasure	Kousuke Shizume	Physical Review E	1995		88	1
Dissipation-error tradeoff in proofreading	Charles H. Bennett	BioSystems	1979		88	13
New evidence for hominin carcass processing strategies at 1.5 Ma, Koobi Fora, Kenya	Briana L. Pobiner, Michael J. Rogers, Christopher M. Monahan, John W.K. Harris	Journal of Human Evolution	2008	Bone modification, Butchery, Carnivory, Cut mark, Early Stone Age, Oldowan, Percussion mark	88	0
Efficiency of molecular motors at maximum power	T. Schmiedl, Udo Seifert	EPL	2008		88	4
Ueber die bewegende Kraft der Wärme und die Gesetze, welche sich daraus für die Wärmelehre selbst ableiten lassen	R. Clausius	Annalen der Physik	1850		87	0
The cell cycle switch computes approximate majority	Luca Cardelli, Attila Csikász-Nagy	Scientific Reports	2012		87	2
A master equation description of local fluctuations	M. Malek-Mansour, G. Nicolis	Journal of Statistical Physics	1975	Fluctuations, master equations, nonequilibrium thermodynamics, nonlinear systems, stochastic processes	87	0
Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch	Hong Qian, Timothy C. Reluga	Physical Review Letters	2005		87	2
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality	Ioan Kosztin, Bogdan Barz, Lorant Janosi	Journal of Chemical Physics	2006		87	0
Modelling the development of cortical systems networks	Marcus Kaiser, Claus C. Hilgetag	Neurocomputing	2004	Cortical connectivity, Cortical systems development, Network growth, Optimal wiring	86	2
Reaching optimal efficiencies using nanosized photoelectric devices	B. Rutten, B. Cleuren, Massimiliano Esposito	Physical Review B - Condensed Matter and Materials Physics	2009		86	2
Bidirectional single-electron counting and the fluctuation theorem	Y. Utsumi, D. S. Golubev, M. Marthaler, K. Saito, T. Fujisawa, Gerd Schön	Physical Review B - Condensed Matter and Materials Physics	2010		86	0
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation	Hong Qian	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	2002		86	2
On rank vs. communication complexity	Noam Nisan, Avi Wigderson	Combinatorica	1995	05C50, 68R05, Mathematics Subject Classification (1991): 68Q05	85	0
Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments	A. Imparato, L. Peliti, G. Pesce, G. Rusciano, A. Sasso	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		85	0
Covariation of residues in the homeodomain sequence family	Neil D. Clarke	Protein Science	1995	covariation, evolution, homeodomains, sequences, structure‐function	84	0
Engineering complex riboswitch regulation by dual genetic selection	Vandana Sharma, Yoko Nomura, Yohei Yokobayashi	Journal of the American Chemical Society	2008		84	0
Unifying three perspectives on information processing in stochastic thermodynamics	A. C. Barato, Udo Seifert	Physical Review Letters	2014		84	23
Relationships between gene expression and brain wiring in the adult rodent brain	Leon French, Paul Pavlidis	PLoS Computational Biology	2011		84	0
Off-equilibrium generalization of the fluctuation dissipation theorem for Ising spins and measurement of the linear response function	Eugenio Lippiello, Federico Corberi, Marco Zannetti	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		84	0
Dissipation and lag in irreversible processes	S. Vaikuntanathan, C. Jarzynski	EPL	2009		84	0
The minimal work cost of information processing	Philippe Faist, Frédéric Dupuis, Jonathan Oppenheim, Renato Renner	Nature Communications	2015		83	3
Information thermodynamics on causal networks	Sosuke Ito, Takahiro Sagawa	Physical Review Letters	2013		83	2
Dietary constraints on encephalization in primates	Jennifer L. Fish, Charles A. Lockwood	American Journal of Physical Anthropology	2003	Brain size, Comparative methods, Expensive tissue hypothesis, Independent contrasts	83	0
Receptive fields and functional architecture in the retina	Vijay Balasubramanian, Peter Sterling	Journal of Physiology	2009		83	0
Unattainability of Carnot efficiency in the Brownian heat engine	Tsuyoshi Hondou, Ken Sekimoto	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	2000		82	0
Relative entropy: Free energy associated with equilibrium fluctuations and nonequilibrium deviations	Hong Qian	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	2001		82	5
Nitric oxide and adenosine mediate vasodilation during functional activation in cerebellar cortex	J. Li, C. Iadecola	Neuropharmacology	1994	GABA, Parallel fibers, adenosine, cerebellar blood flow, glutamate, nitric oxide, nitro-l-arginine, vasodilation	82	0
Thermodynamic reversibility in feedback processes	Jordan M. Horowitz, Juan M.R. Parrondo	EPL	2011		82	1
Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injection	Yasuo Kawaguchi, Kiyoshi Hama	Brain Research	1987	Dentate gyrus, Fast spiking cell, GABAergic neuron, Hippocampus, Intracellular injection of HRP, Non-pyramidal cell, Slice preparation	82	0
Maxwell's refrigerator: An exactly solvable model	Dibyendu Mandal, H. T. Quan, Christopher Jarzynski	Physical Review Letters	2013		81	1
Exploiting correlation in stochastic circuit design	Armin Alaghi, John P. Hayes	2013 IEEE 31st International Conference on Computer Design, ICCD 2013	2013	Stochastic computing, low-power design, signal correlation, stochastic circuit design	80	0
Compendium of the Foundations of Classical Statistical Physics	Jos Uffink	Philosophy of Physics	2007		80	6
Optimized free energies from bidirectional single-molecule force spectroscopy	David D.L. Minh, Artur B. Adib	Physical Review Letters	2008		80	0
Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation	Irina V. Gopich, Attila Szabo	Journal of Chemical Physics	2002		79	0
Maximum likelihood and the single receptor	Robert G. Endres, Ned S. Wingreen	Physical Review Letters	2009		79	0
Thermodynamics of genuine nonequilibrium states under feedback control	David Abreu, Udo Seifert	Physical Review Letters	2012		79	6
Digital genetics: Unravelling the genetic basis of evolution	Christoph Adami	Nature Reviews Genetics	2006		78	2
ERSA: Error resilient system architecture for probabilistic applications	Hyungmin Cho, Larkhoon Leem, Subhasish Mitra	IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems	2012	Error resilience, hardware errors, probabilistic applications, reliability, robust systems	78	0
Fluctuation theorem for transport in mesoscopic systems	David Andrieux, Pierre Gaspard	Journal of Statistical Mechanics: Theory and Experiment	2006	Current fluctuations, Exact results, Stationary states (theory)	78	0
Fluctuation theorems for quantum processes	Tameem Albash, Daniel A. Lidar, Milad Marvian, Paolo Zanardi	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2013		77	0
An update on the nonequilibrium linear response	M. Baiesi, C. Maes	New Journal of Physics	2013		77	0
Fluctuation theorem for a single enzym or molecular motor	Udo Seifert	Europhysics Letters	2005		77	3
On a hypothetical generational relationship between HCN and constituents of the reductive citric acid cycle	Albert Eschenmoser	Chemistry and Biodiversity	2007		76	0
Perfect and near-perfect adaptation in a model of bacterial chemotaxis	Bernardo A. Mello, Yuhai Tu	Biophysical Journal	2003		76	0
Non-equilibrium work relations	Jorge Kurchan	Journal of Statistical Mechanics: Theory and Experiment	2007	Current fluctuations, Stochastic particle dynamics (theory), Transport processes/heat transfer (theory)	76	1
Stochastic thermodynamics of single enzymes and molecular motors	Udo Seifert	European Physical Journal E	2011		75	1
Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond	John Earman, John D. Norton	Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics	1999		75	1
Thermodynamic universality of quantum Carnot engines	Bartłomiej Gardas, Sebastian Deffner	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2015		75	1
Nonequilibrium work fluctuations for oscillators in non-Markovian baths	Trieu Mai, Abhishek Dhar	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		75	0
Experimental study of the fluctuation theorem in a nonequilibrium steady state	G. M. Wang, J. C. Reid, D. M. Carberry, D. R.M. Williams, E. M. Sevick, Denis J. Evans	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		75	0
Realization of a feedback controlled flashing ratchet	Benjamin J. Lopez, Nathan J. Kuwada, Erin M. Craig, Brian R. Long, Heiner Linke	Physical Review Letters	2008		74	0
Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor	A. W.C. Lau, D. Lacoste, K. Mallick	Physical Review Letters	2007		74	0
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models	Julien Tailleur, Jorge Kurchan, Vivien Lecomte	Journal of Physics A: Mathematical and Theoretical	2008		74	0
Efficient turing-universal computation with DNA polymers	Lulu Qian, David Soloveichik, Erik Winfree	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	2011		73	4
Physical Responses of Bacterial Chemoreceptors	Ady Vaknin, Howard C. Berg	Journal of Molecular Biology	2007	chemotaxis, fluorescence polarization, fluorescence resonance energy transfer, membrane proteins, receptors	73	0
Imitating chemical motors with optimal information motors	Jordan M. Horowitz, Takahiro Sagawa, Juan M.R. Parrondo	Physical Review Letters	2013		73	1
An autonomous and reversible Maxwell's demon	Udo Seifert, A. C. Barato	EPL	2013		73	26
The statistical neuroanatomy of frontal networks in the macaque	Bruno B. Averbeck, Moonsang Seo	PLoS Computational Biology	2008		73	0
Motor-Driven Dynamics in Actin-Myosin Networks	Loïc Le Goff, François Amblard, Eric M. Furst	Physical Review Letters	2002		73	0
Heat conduction in a three dimensional anharmonic crystal	Keiji Saito, Abhishek Dhar	Physical Review Letters	2010		72	0
Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit	Brian Lambson, David Carlton, Jeffrey Bokor	Physical Review Letters	2011		72	1
Thermodynamics of feedback controlled systems	F. J. Cao, M. Feito	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		72	1
Covalent modifications of histones during mitosis and meiosis	Dazhong Xu, Jingxiang Bai, Qing Duan, Max Costa, Wei Dai	Cell Cycle	2009	Cell cycle, Covalent modifications, Histone, Meiosis, Mitosis	71	1
Deterministic function computation with chemical reaction networks	Ho Lin Chen, David Doty, David Soloveichik	Natural Computing	2014	Distributed computing, Molecular programming, Population protocols, Semilinear functions, Stochastic chemical kinetics	71	3
Alternative splicing in the nervous system: An emerging source of diversity and regulation	Christopher J. Lee, Kris Irizarry	Biological Psychiatry	2003	Alternative splicing, Genomics, Receptors, mRNA	71	0
Length of time's arrow	Edward H. Feng, Gavin Crooks	Physical Review Letters	2008		71	4
Entropy production in full phase space for continuous stochastic dynamics	Richard E. Spinney, Ian J. Ford	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		71	0
Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows	S. Ciliberto, N. Garnier, S. Hernandez, C. Lacpatia, J. F. Pinton, G. Ruiz Chavarria	Physica A: Statistical Mechanics and its Applications	2004	Fluctuation theorem, Statistical mechanics, Turbulence	71	1
Deterministic Function Computation with Chemical Reaction Network	Ho Lin Chen, David Doty, David Soloveichik	Natural Computing	2014	Distributed computing, Molecular programming, Population protocols, Semilinear functions, Stochastic chemical kinetics	71	1
An introduction to population protocols	James Aspnes, Eric Ruppert	Middleware for Network Eccentric and Mobile Applications	2009		70	4
Integrated information increases with fitness in the evolution of animats	Jeffrey A. Edlund, Nicolas Chaumont, Arend Hintze, Christof Koch, Giulio Tononi, Christoph Adami	PLoS Computational Biology	2011		70	0
Thermodynamic constraints on kinetic proofreading in biosynthetic pathways	M. Ehrenberg, C. Blomberg	Biophysical Journal	1980		70	0
Generalized detailed fluctuation theorem under nonequilibrium feedback control	M. Ponmurugan	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		69	0
Optimal protocols for minimal work processes in underdamped stochastic thermodynamics	Alex Gomez-Marin, Tim Schmiedl, Udo Seifert	Journal of Chemical Physics	2008		69	4
Refined Second Law of Thermodynamics for Fast Random Processes	Erik Aurell, Krzysztof Gawȩdzki, Carlos Mejía-Monasterio, Roya Mohayaee, Paolo Muratore-Ginanneschi	Journal of Statistical Physics	2012	Landauer principle, Monge-Kantorovich optimal mass transport, Second Law of Thermodynamics	69	0
Stochastic thermodynamics for Maxwell demon feedbacks	Massimiliano Esposito, Gernot Schaller	EPL	2012		69	6
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions	Marcus Kaiser, Claus C. Hilgetag, Arjen Van Ooyen	Cerebral Cortex	2009	Axon growth, Cortical networks, Filling fraction, Neural competition, Neural networks	68	0
Escorted free energy simulations: Improving convergence by reducing dissipation	Suriyanarayanan Vaikuntanathan, Christopher Jarzynski	Physical Review Letters	2008		68	5
Finite-time thermodynamics for a single-level quantum dot	R. Kawai, K. Lindenberg, C. Van Den Broeck, Massimiliano Esposito	EPL	2010		68	1
Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid	Huan Xiang Zhou, Attila Szabo	Journal of Chemical Physics	1991		67	1
Second-law-like inequalities with information and their interpretations	Jordan M. Horowitz, Henrik Sandberg	New Journal of Physics	2014	feedback, information theory, nonequilibrium thermodynamics, optimal control theory	67	2
The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses	Païkan Marcaggi, Daniela Billups, David Attwell	Journal of Physiology	2003		67	0
Invisibility in non-Hermitian tight-binding lattices	Stefano Longhi	Physical Review A - Atomic, Molecular, and Optical Physics	2010		67	0
Pumped biochemical reactions, nonequilibrium circulation, and stochastic resonance	Hong Qian, Min Qian	Physical Review Letters	2000		67	0
Efficiency at maximum power output of linear irreversible Carnot-like heat engines	Yang Wang, Z. C. Tu	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		67	0
Stochastic thermodynamics and sustainable efficiency in work production	B. Gaveau, M. Moreau, L. S. Schulman	Physical Review Letters	2010		67	3
Optimal protocols and optimal transport in stochastic thermodynamics	Erik Aurell, Carlos Mejía-Monasterio, Paolo Muratore-Ginanneschi	Physical Review Letters	2011		67	0
Analog Computation by DNA Strand Displacement Circuits	Tianqi Song, Sudhanshu Garg, Reem Mokhtar, Hieu Bui, John Reif	ACS Synthetic Biology	2016	DNA computing, DNA nanoscience, DNA nanotechnology, analog computation, molecular programming, self-assembly	67	5
Convergence in the olfactory system: quantitative aspects of odour sensitivity	Wim van Drongelen, Andre Holley, Kjell B. Døving	Journal of Theoretical Biology	1978		66	0
The stochastic pump effect and geometric phases in dissipative and stochastic systems	N. A. Sinitsyn	Journal of Physics A: Mathematical and Theoretical	2009		66	0
Fluctuation theorems for a molecular refrigerator	Kyung Hyuk Kim, Hong Qian	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		66	0
Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems	Takahiro Harada, Shin Ichi Sasa	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		66	0
Flight of the FINCH through the java wilderness	Michael Orlov, Moshe Sipper	IEEE Transactions on Evolutionary Computation	2011	Automatic programming, Java bytecode, genetic programming (GP), software evolution	65	0
Thermodynamic Costs of Information Processing in Sensory Adaptation	Pablo Sartori, Léo Granger, Chiu Fan Lee, Jordan M. Horowitz	PLoS Computational Biology	2014		65	1
Geometric effects on complex network structure in the cortex	J. A. Henderson, P. A. Robinson	Physical Review Letters	2011		65	1
Role of Astrocytes in Matching Blood Flow to Neuronal Activity	Danica Jakovcevic, David R. Harder	Current Topics in Developmental Biology	2007		65	0
Time-dependent pseudo-Hermitian Hamiltonians defining a unitary quantum system and uniqueness of the metric operator	Ali Mostafazadeh	Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics	2007	Geometric phase, Inner product, Metric operator, PT-symmetry, Pseudo-Hermitian, Time-dependent Hamiltonian, Unitary	65	0
Symmetries of generating functionals of Langevin processes with colored multiplicative noise	Camille Aron, Giulio Biroli, Leticia F. Cugliandolo	Journal of Statistical Mechanics: Theory and Experiment	2010	Fluctuations (theory), Rigorous results in statistical mechanics, Stochastic particle dynamics (theory), Stochastic processes (theory)	65	0
Experimental demonstration of a latch in clocked quantum-dot cellular automata	Alexei O. Orlov, Ravi K. Kummamuru, Rajagopal Ramasubramaniam, Geza Toth, Craig S. Lent, Gary H. Bernstein, Gregory L. Snider	Applied Physics Letters	2001		64	1
Chromatin and epigenetic regulation of pre-mrna processing	Seth J. Brown, Peter Stoilov, Yi Xing	Human Molecular Genetics	2012		64	0
Cooperativity, sensitivity, and noise in biochemical signaling	William Bialek, Sima Setayeshgar	Physical Review Letters	2008		64	3
Use of mutual information to decrease entropy: Implications for the second law of thermodynamics	Seth Lloyd	Physical Review A	1989		64	5
Efficient behavior of small-world networks	Vito Latora, Massimo Marchiori	Physical Review Letters	2001		64	0
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes	S. Velasco, A. Medina, A. Calvo Hernandez, J. M.M. Roco	Journal of Physics D: Applied Physics	2001		64	1
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes	G. N. Bochkov, Yu E. Kuzovlev	Physica A: Statistical Mechanics and its Applications	1981		64	0
Pseudo-random generators for all hardnesses	Christopher Umans	Journal of Computer and System Sciences	2003	Complexity classes, Derandomization, Low-degree extension, Pseudo-random number generators	63	0
Fluctuation theorem for partially masked nonequilibrium dynamics	Naoto Shiraishi, Takahiro Sagawa	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2015		63	1
The Jarzynski relation, fluctuation theorems, and stochastic thermodynamics for non-Markovian processes	T. Speck, Udo Seifert	Journal of Statistical Mechanics: Theory and Experiment	2007	Nonequilibrium fluctuations in small systems, Stochastic processes (theory)	63	6
Steady-state fluctuation relations for systems driven by an external random force	J. R. Gomez-Solano, L. Bellon, A. Petrosyan, S. Ciliberto	EPL	2010		63	0
The mechanics and fluctuation spectrum of active gels	Alex J. Levine, F. C. MacKintosh	Journal of Physical Chemistry B	2009		63	0
Thermopower with broken time-reversal symmetry	Keiji Saito, Giuliano Benenti, Giulio Casati, Tomaž Prosen	Physical Review B - Condensed Matter and Materials Physics	2011		63	0
Second law of thermodynamics and quantum feedback control: Maxwellâ€™s demon with weak measurements	Kurt Jacobs	Physical Review A - Atomic, Molecular, and Optical Physics	2009		62	0
Stochastic energetics of non-uniform temperature systems	Miki Matsuo, Shin Ichi Sasa	Physica A: Statistical Mechanics and its Applications	2000		62	0
Unbalanced expanders and randomness extractors from parvaresh-vardy codes	Venkatesan Guruswami, Christopher Umans, Salil Vadhan	Proceedings of the Annual IEEE Conference on Computational Complexity	2007	Expander graphs, Randomness extractors	61	7
Reversible space equals deterministic space	Klaus Jörn Lange, Pierre McKenzie, Alain Tapp	Journal of Computer and System Sciences	2000		61	1
Qubit thermometry for micromechanical resonators	Matteo Brunelli, Stefano Olivares, Matteo G.A. Paris	Physical Review A - Atomic, Molecular, and Optical Physics	2011		61	1
Unified treatment of the quantum fluctuation theorem and the Jarzynski equality in terms of microscopic reversibility	T. Monnai	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		61	0
On the Relation between Gradient Flows and the Large-Deviation Principle, with Applications to Markov Chains and Diffusion	A. Mielke, M. A. Peletier, D. R.M. Renger	Potential Analysis	2014	Convex analysis, Generalized gradient flows, Large deviations, Particle systems	60	0
Tight coupling in thermal Brownian motors	A. Gomez-Marin, J. M. Sancho	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		60	0
Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study	Mark A. Danielson, Joseph J. Falke, Hans Peter Biemann, Daniel E. Koshland	Biochemistry	1994		60	0
Maxwell's demon in biochemical signal transduction with feedback loop	Sosuke Ito, Takahiro Sagawa	Nature Communications	2015		60	2
Quantum Jarzynski-Sagawa-Ueda Relations	Yohei Morikuni, Hal Tasaki	Journal of Statistical Physics	2011	Feedback, Jarzynski relation, Measurement, Quantum system	60	5
Heat engine driven by purely quantum information	Jung Jun Park, Kang Hwan Kim, Takahiro Sagawa, Sang Wook Kim	Physical Review Letters	2013		60	2
Neuron-glia metabolic coupling and plasticity	Pierre J. Magistretti	Experimental Physiology	2011		60	0
Memory erasure in small systems	Raoul Dillenschneider, Eric Lutz	Physical Review Letters	2009		60	0
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors	David Andrieux, Pierre Gaspard	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		59	0
BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study	R. J. Silverwood, B. L. De Stavola, T. J. Cole, D. A. Leon	International Journal of Obesity	2009	Body mass index, Childhood obesity, Growth, Infancy	59	0
Role of hidden slow degrees of freedom in the fluctuation theorem	J. Mehl, B. Lander, C. Bechinger, V. Blickle, Udo Seifert	Physical Review Letters	2012		59	3
A possible classification of nonequilibrium steady states	B. Schmittmann, R. K.P. Zia	Journal of Physics A: Mathematical and General	2006		59	0
Fluctuation-dissipation theorems and entropy production in relaxational systems	Leticia F. Cugliandolo, David S. Dean, Jorge Kurchan	Physical Review Letters	1997		59	0
Computational design of nucleic acid feedback control circuits	Boyan Yordanov, Jongmin Kim, Rasmus L. Petersen, Angelina Shudy, Vishwesh V. Kulkarni, Andrew Phillips	ACS Synthetic Biology	2014	DNA strand displacement, DNA toolbox, feedback control, genelet, molecular programming, nucleic acid circuits	58	1
Extinction in neutrally stable stochastic Lotka-Volterra models	Alexander Dobrinevski, Erwin Frey	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		58	0
Energy dissipation and noise correlations in biochemical sensing	Christopher C. Govern, Pieter Rein ten Wolde	Physical Review Letters	2014		58	5
Nonequilibrium thermodynamics of stochastic systems with odd and even variables	Richard E. Spinney, Ian J. Ford	Physical Review Letters	2012		58	0
Strand algebras for DNA computing	Luca Cardelli	Natural Computing	2011	DNA computing, DNA strand displacement, Process algebra	57	1
Three-dimensional simulations of reversible bimolecular reactions: The simple target problem	A. V. Popov, N. Agmon	Journal of Chemical Physics	2001		57	0
Sniffing and spatiotemporal coding in olfaction	John W. Scott	Chemical Senses	2006	Electroolfactogram, Flow rate, Odorant hydrophobicity, Sorption	57	0
Physiological evidence for dendrodendritic synaptic interactions in the rabbit's olfactory glomerulus	Gordon M. Shepherd	Brain Research	1971		57	0
Nonlinear response and fluctuation-dissipation relations	Eugenio Lippiello, Federico Corberi, Alessandro Sarracino, Marco Zannetti	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		57	1
Molecular kinetic analysis of a finite-time Carnot cycle	Y. Izumida, K. Okuda	EPL	2008		57	0
Distribution of work in isothermal nonequilibrium processes	Thomas Speck, Udo Seifert	Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics	2004		57	1
The adjustable nucleosome: An epigenetic signaling module	Bryan M. Turner	Trends in Genetics	2012	Chromatin, Epigenetics, Gene-environment interaction, Histone modification, Nuclear signaling, Nucleosome	56	0
A fluctuation theorem for non-equilibrium relaxational systems driven by external forces	Francesco Zamponi, Federico Bonetto, Leticia F. Cugliandolo, Jorge Kurchan	Journal of Statistical Mechanics: Theory and Experiment	2005	Brownian motion, Driven diffusive systems (theory), Fluctuations (theory), Slow dynamics and ageing (theory)	56	4
Statistical mechanics of Monod-Wyman-Changeux (MWC) models	Sarah Marzen, Hernan G. Garcia, Rob Phillips	Journal of Molecular Biology	2013	Monod-Wyman-Changeux model, allostery, bacterial chemotaxis, chromatin structure, information theory	55	9
Self-organization and entropy reduction in a living cell	Paul C.W. Davies, Elisabeth Rieper, Jack A. Tuszynski	BioSystems	2013	Entropy, Genetic code, Information theory, Shannon information, Thermodynamics	55	7
Physics of Self-Organization and Evolution	Rainer Feistel, Werner Ebeling	Physics of Self-Organization and Evolution	2011		55	3
Human neoteny revisited: The case of synaptic plasticity	Enric Bufill, Jordi Agustí, Rafael Blesa	American Journal of Human Biology	2011		55	1
Neurochemical organization of the macaque striate cortex: Correlation of cytochrome oxidase with Na+K+ATPase, NADPH-diaphorase, nitric oxide synthase, and N-methyl-D-aspartate receptor subunit 1	M. Wong-Riley, B. Anderson, W. Liebl, Z. Huang	Neuroscience	1998	Energy metabolism, Excitatory neurochemicals, Glutamate receptor, Immunohistochemistry, Impulse blockade, Primary visual cortex	55	0
Current, maximum power and optimized efficiency of a Brownian heat engine	Mesfin Asfaw, Mulugeta Bekele	European Physical Journal B	2004		55	0
Probing molecular free energy landscapes by periodic loading	Oliver Braun, Andreas Hanke, Udo Seifert	Physical Review Letters	2004		55	0
Lower bounds on probabilistic linear decision trees	Marc Snir	Theoretical Computer Science	1985		54	0
Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums	Anthony J. Genot, Jonathan Bath, Andrew J. Turberfield	Angewandte Chemie - International Edition	2013	DNA recognition, DNA structures, molecular computation, nanotechnology, strand displacement	54	0
Generalization of the second law for a transition between nonequilibrium states	K. Takara, H. H. Hasegawa, D. J. Driebe	Physics Letters, Section A: General, Atomic and Solid State Physics	2010		54	13
Holevo's bound from a general quantum fluctuation theorem	Dvir Kafri, Sebastian Deffner	Physical Review A - Atomic, Molecular, and Optical Physics	2012		54	5
An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions	Donna G. Blackmond	Angewandte Chemie - International Edition	2009	Autocatalysis, Autoinduction, Ligand acceleration, Prebiotic chemistry, Systems chemistry	53	1
Effective temperatures in driven systems: Static versus time-dependent relations	Corey S. O'Hern, Andrea J. Liu, Sidney R. Nagel	Physical Review Letters	2004		53	0
Receptor noise and directional sensing in eukaryotic chemotaxis	Wouter Jan Rappel, Herbert Levine	Physical Review Letters	2008		53	0
Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance	Amy L. Bauernfeind, Sarah K. Barks, Tetyana Duka, Lawrence I. Grossman, Patrick R. Hof, Chet C. Sherwood	Brain Structure and Function	2014	Aerobic gycolysis, Brain energetics, Default mode network, Evolution, Oxidative phosphorylation	53	0
Measurement of damping and temperature: Precision bounds in Gaussian dissipative channels	Alex Monras, Fabrizio Illuminati	Physical Review A - Atomic, Molecular, and Optical Physics	2011		53	1
Stochastically driven single-level quantum dot: A nanoscale finite-time thermodynamic machine and its various operational modes	Massimiliano Esposito, Niraj Kumar, Katja Lindenberg, Christian Van Den Broeck	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		52	1
Irreversible dynamics of a massive intruder in dense granular fluids	A. Sarracino, D. Villamaina, G. Gradenigo, A. Puglisi	EPL	2010		52	0
Limits of sensing temporal concentration changes by single cells	Thierry Mora, Ned S. Wingreen	Physical Review Letters	2010		52	0
Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis	Silke Neumann, Clinton H. Hansen, Ned S. Wingreen, Victor Sourjik	EMBO Journal	2010	FRET, bacterial chemotaxis, signal integration, signal transduction, transport	52	3
Thermodynamic efficiency of information and heat flow	Armen E. Allahverdyan, Dominik Janzing, Guenter Mahler	Journal of Statistical Mechanics: Theory and Experiment	2009	Communication, Source and channel coding, Supply and information networks	52	1
Large deviation function for entropy production in driven one-dimensional systems	Jakob Mehl, Thomas Speck, Udo Seifert	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		52	3
Universal aspects of the chemomechanical coupling for molecular motors	Reinhard Lipowsky	Physical Review Letters	2000		52	0
Histone Segregation on Replicating Chromatin†	Vaughn Jackson, Roger Chalkley	Biochemistry	1985		51	0
Histone Segregation on Replicating Chromatinâ	Vaughn Jackson, Roger Chalkley	Biochemistry	1985		51	0
On thermodynamic interpretation of transfer entropy	Mikhail Prokopenko, Joseph T. Lizier, Don C. Price	Entropy	2013	Boltzmann's principle, Causal effect, Entropy production, Information transfer, Irreversibility, Kullback-Leibler divergence, Thermodynamic equilibrium, Transfer entropy	51	1
The connection between logical and thermodynamic irreversibility	James Ladyman, Stuart Presnell, Anthony J. Short, Berry Groisman	Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics	2007	Computation, Entropy, Information, Irreversibility, Landauer's principle, Thermodynamics	51	1
Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction	Hong Qian	Biophysical Chemistry	2003	Biological signal transduction, Kinetic analysis, Thermodynamic	51	0
Information-theoretic versus thermodynamic entropy production in autonomous sensory networks	A. C. Barato, D. Hartich, Udo Seifert	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2013		51	5
Generalization of the second law for a nonequilibrium initial state	H. H. Hasegawa, J. Ishikawa, K. Takara, D. J. Driebe	Physics Letters, Section A: General, Atomic and Solid State Physics	2010		51	5
The selfish brain: Competition for energy resources	Achim Peters	American Journal of Human Biology	2011		51	2
The stochastic chemomechanics of the F1-ATPase molecular motor	P. Gaspard, E. Gerritsma	Journal of Theoretical Biology	2007	Arrhenius kinetics, F1-ATPase, Mechanochemical coupling, Molecular motor, Stochastic process	51	0
Nonequilibrium steady-state fluctuations in actively cooled resonators	M. Bonaldi, L. Conti, P. De Gregorio, L. Rondoni, G. Vedovato, A. Vinante, M. Bignotto, M. Cerdonio, P. Falferi, N. Liguori, S. Longo, R. Mezzena, A. Ortolan, G. A. Prodi, F. Salemi, L. Taffarello, S. Vitale, J. P. Zendri	Physical Review Letters	2009		51	0
Failure of the work-hamiltonian connection for free-energy calculations	J. Miguel Rubi, Jose M.G. Vilar	Physical Review Letters	2008		51	0
Pseudorandomness and average-case complexity via uniform reductions	Luca Trevisan, Salil Vadhan	Computational Complexity	2007	Average-case complexity, Derandomization, Instance checkers, Pseudorandomness	50	0
Lower bounds for polynomial calculus: Non-binomial case	Mic hael Alekhnovich, Alexander A. Razborov	Annual Symposium on Foundations of Computer Science - Proceedings	2001		50	0
Thermodynamics of statistical inference by cells	Alex H. Lang, Charles K. Fisher, Thierry Mora, Pankaj Mehta	Physical Review Letters	2014		50	1
Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements	L. Fusco, S. Pigeon, A. Xuereb, L. Mazzola, M. Campisi, A. Ferraro, M. Paternostro, G. De Chiara, T. J.G. Apollaro	Physical Review X	2014		50	0
Large deviations of heat flow in harmonic chains	Anupam Kundu, Sanjib Sabhapandit, Abhishek Dhar	Journal of Statistical Mechanics: Theory and Experiment	2011	current fluctuations, heat conduction, large deviations in non-equilibrium systems	50	0
Fluctuations of internal energy flow in a vibrated granular gas	Andrea Puglisi, Paolo Visco, Alain Barrat, Emmanuel Trizac, Frédéric Van Wijland	Physical Review Letters	2005		50	0
Fluctuation relations for a driven Brownian particle	A. Imparato, L. Peliti	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		50	0
Relevance of initial and final conditions for the fluctuation relation in Markov processes	A. Puglisi, L. Rondoni, A. Vulpiani	Journal of Statistical Mechanics: Theory and Experiment	2006	Current fluctuations, Fluctuations (theory), Granular matter, Stochastic processes (theory)	50	0
Fluctuation-dissipation relations for Markov processes	Gregor Diezemann	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		50	0
Compiler optimization on instruction scheduling for low power	Chingren Lee, Jenq Kuen Lee, Ting Ting Hwang, Shi Chun Tsai	Proceedings of the International Symposium on System Synthesis	2000	Capacitance, Circuits, Computer architecture, Costs, Energy consumption, Greedy algorithms, Optimizing compilers, Processor scheduling, Software performance, VLIW	50	0
Computing the optimal protocol for finite-time processes in stochastic thermodynamics	Holger Then, Andreas Engel	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		49	0
Role of spatial averaging in the precision of gene expression patterns	Thorsten Erdmann, Martin Howard, Pieter Rein ten Wolde	Physical Review Letters	2009		49	0
Kinetic versus energetic discrimination in biological copying	Pablo Sartori, Simone Pigolotti	Physical Review Letters	2013		49	0
A test of metabolically efficient coding in the retina	Vijay Balasubramanian, Michael J. Berry	Network: Computation in Neural Systems	2002		49	2
Qubit-assisted thermometry of a quantum harmonic oscillator	Matteo Brunelli, Stefano Olivares, Mauro Paternostro, Matteo G.A. Paris	Physical Review A - Atomic, Molecular, and Optical Physics	2012		49	1
Non-equilibrium equalities with unital quantum channels	Alexey E. Rastegin	Journal of Statistical Mechanics: Theory and Experiment	2013	exact results	49	0
Optimal estimates of free energies from multistate nonequilibrium work data	Paul Maragakis, Martin Spichty, Martin Karplus	Physical Review Letters	2006		49	0
Comparison of work fluctuation relations	Jordan Horowitz, Christopher Jarzynski	Journal of Statistical Mechanics: Theory and Experiment	2007	Nonequilibrium fluctuations in small systems	49	3
Fluctuation relations and coarse-graining	Saar Rahav, Christopher Jarzynski	Journal of Statistical Mechanics: Theory and Experiment	2007	Nonequilibrium fluctuations in small systems, Stochastic particle dynamics (theory)	48	6
Quantifying noise levels of intercellular signals	Kai Wang, Wouter Jan Rappel, Rex Kerr, Herbert Levine	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		48	0
A general framework for non-equilibrium phenomena: The master equation and its formal consequences	Bernard Gaveau, L. S. Schulman	Physics Letters, Section A: General, Atomic and Solid State Physics	1997		48	2
Neurochemical organization of the macaque retina: Effect of TTX on levels and gene expression of cytochrome oxidase and nitric oxide synthase and on the immunoreactivity of Na+ K+ ATPase and NMDA receptor subunit I	Margaret T.T. Wong-Riley, Zifang Huang, Wendy Liebl, Feng Nie, Haiyun Xu, Chenyang Zhang	Vision Research	1998	Cytochrome oxidase, NMDA receptor, Na+ K+ ATPase, Nitric oxide synthase, cDNA	48	0
Dynamical reconnection and stability constraints on cortical network architecture	P. A. Robinson, J. A. Henderson, E. Matar, P. Riley, R. T. Gray	Physical Review Letters	2009		48	1
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium	A. E. Allahverdyan, Th M. Nieuwenhuizen	Physica A: Statistical Mechanics and its Applications	2002	Mathematical proof, Perpetual motion, Persistent currents, Second law, Thomson formulation	48	0
Entropy production for mechanically or chemically driven biomolecules	Tim Schmiedl, Thomas Speck, Udo Seifert	Journal of Statistical Physics	2007	Biomolecules, Brownian motion, Chemical kinetics in biological systems, Fluctuation phenomena, Random processes, Thermodynamics	48	0
Potential and flux decomposition for dynamical systems and non-equilibrium thermodynamics: Curvature, gauge field, and generalized fluctuation-dissipation theorem	Haidong Feng, Jin Wang	Journal of Chemical Physics	2011		47	0
Optimizing Google's warehouse scale computers: The NUMA experience	Lingjia Tang, Jason Mars, Xiao Zhang, Robert Hagmann, Robert Hundt, Eric Tune	Proceedings - International Symposium on High-Performance Computer Architecture	2013		47	1
Thermodynamics of computational copying in biochemical systems	Thomas E. Ouldridge, Christopher C. Govern, Pieter Rein ten Wolde	Physical Review X	2017	Biological physics, Chemical physics, Statistical physics	47	4
Drivers of bacterial maintenance and minimal energy requirements	Peter M. van Bodegom, David Wolpert, Eric Libby, Jan Amend, Tori Hoehler, Chris Kempes	Frontiers in Microbiology	2017	Basal power requirement, Maintenance metabolism, Metabolic ecology	47	10
The scaling of white matter to gray matter in cerebellum and neocortex	Eliot C. Bush, John M. Allman	Brain, Behavior and Evolution	2003	Cerebellum, Mammals, Neocortex, Scaling, White matter	47	0
Designing optimal discrete-feedback thermodynamic engines	Jordan M. Horowitz, Juan M.R. Parrondo	New Journal of Physics	2011		47	3
Thermodynamics of Computational Copying in Biochemical Systems	Thomas E. Ouldridge, Christopher C. Govern, Pieter Rein ten Wolde	Physical Review X	2017	Biological physics, Chemical physics, Statistical physics	47	9
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system	John C. Anderson, Simon B. Laughlin	Vision Research	2000	Blue cones, Colour, Contrast gain, Frequency response, Photoreceptor, SNR, Vision	47	0
Binary Multiplication with PN Sequences	P. K. Gupta, R. Kumaresan	IEEE Transactions on Acoustics, Speech, and Signal Processing	1988		46	4
Efficient checking of computations	Richard J. Lipton	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	1990		46	0
Combinatorial readout of dual histone modifications by paired chromatin-associated modules	Zhanxin Wang, Dinshaw J. Patel	Journal of Biological Chemistry	2011		46	0
Retina	Peter Sterling, Jonathan B. Demb	The Synaptic Organization of the Brain	2004	Eyes, Synaptic connections, Vision, Visual information	46	0
Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans	Robert Walker, Kim Hill, Oskar Burger, A. Magdalena Hurtado	American Journal of Physical Anthropology	2006	Ache foragers, Chimpanzees, Growth rates, Human life history	46	1
Wiring cost in the organization of a biological neuronal network	Yong Yeol Ahn, Hawoong Jeong, Beom Jun Kim	Physica A: Statistical Mechanics and its Applications	2006	Biological network, Neuronal network, Wiring cost	46	1
Power fluctuations in stochastic models of dissipative systems	Jean Farago	Physica A: Statistical Mechanics and its Applications	2004	Brownian motion, Fluctuation phenomena, Noise, Probability theory, Random processes, Statistics, Stochastic processes	46	0
Non-equilibrium spin-boson model: Counting statistics and the heat exchange fluctuation theorem	Lena Nicolin, Dvira Segal	Journal of Chemical Physics	2011		46	1
Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale	Raphaël Chetrite, Shamik Gupta	Journal of Statistical Physics	2011	Fluctuation Relations, Fluctuation-Dissipation Theorems, Martingales, Non-equilibrium Markov Process	46	0
Morphisms of reaction networks that couple structure to function	Luca Cardelli	BMC Systems Biology	2014	Biological networks, Chemical reaction networks, Influence networks, Morphisms	45	0
Irreversible effects of memory	A. Puglisi, D. Villamaina	Europhysics Letters	2009		45	0
Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle	Nitin Kumar, Sriram Ramaswamy, A. K. Sood	Physical Review Letters	2011		45	0
Fluctuation dissipation relations far from equilibrium	Federico Corberi, Eugenio Lippiello, Marco Zannetti	Journal of Statistical Mechanics: Theory and Experiment	2007	Coarsening processes (theory)	45	0
Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes	Hong Qian, X. Sunney Xie	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		45	0
Generalizing Landauer's principle	O. J.E. Maroney	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		45	2
Quantum Measurement Bounds beyond the Uncertainty Relations	Vittorio Giovannetti, Seth Lloyd, Lorenzo MacCone	Physical Review Letters	2012		45	3
Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit	Ronald Benjamin, Ryoichi Kawai	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		45	0
The Use of Information Theory in Evolutionary Biology	Christoph Adami	Annals of the New York Academy of Sciences	2012	Animat evolution, Evolution, Information theory, Protein evolution	45	1
Disjointness is hard in the multiparty number-on-the-forehead model	Troy Lee, Adi Shraibman	Computational Complexity	2009	Communication complexity, Disjointness, Number-on-the-forehead model, Proof complexity	44	0
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation	Stefan Schuster, Ronny Schuster	Journal of Mathematical Chemistry	1989		44	6
Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines	Yang Wang, Z. C. Tu	EPL	2012		44	0
Geometrical expression of excess entropy production	Takahiro Sagawa, Hisao Hayakawa	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2011		44	5
Fluctuation theorems for non-linear generalized Langevin systems	Takahiro Ohkuma, Takao Ohta	Journal of Statistical Mechanics: Theory and Experiment	2007	Fluctuations (theory), Stochastic particle dynamics (theory), Stochastic processes (theory)	44	10
Fluctuation symmetries for work and heat	Marco Baiesi, Tim Jacobs, Christian Maes, Nikos S. Skantzos	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		44	0
Lower bounds on dissipation upon coarse graining	A. Gomez-Marin, J. M.R. Parrondo, C. Van Den Broeck	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		44	0
Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids	Ludovic Berthier	Physical Review Letters	2007		44	0
Jarzynski equality for quantum stochastic maps	Alexey E. Rastegin, Karol Ayczkowski	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2014		43	0
A simple theory of motor protein kinetics and energetics. II	Hong Qian	Biophysical Chemistry	2000		43	1
Fluctuation theorem for birth-death or chemical master equations with time-dependent rates	Udo Seifert	Journal of Physics A: Mathematical and General	2004		43	10
Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions	Reinhard Lipowsky, Steffen Liepelt	Journal of Statistical Physics	2008	Cytoskeletal motors, Energy transduction, Entropy production, Stochastic processes	43	1
Entropy production theorems and some consequences	Arnab Saha, Sourabh Lahiri, A. M. Jayannavar	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		43	0
Study of stochastic resonance by method of stochastic energetics	Toshiya Iwai	Physica A: Statistical Mechanics and its Applications	2001	Inter-well motion, Intra-well motion, Phase lag, Stochastic energetics, Stochastic resonance	43	4
Thermodynamics of natural selection I: Energy flow and the limits on organization	Eric Smith	Journal of Theoretical Biology	2008	Carnot cycle, Landauer's principle, Natural selection, Thermodynamics	43	3
Modeling Maxwell's demon with a microcanonical Szilard engine	Suriyanarayanan Vaikuntanathan, Christopher Jarzynski	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2011		42	6
Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics	Pinar Korkmaz, Bilge E.S. Akgul, Krishna V. Palem, Lakshmi N. Chakrapani	Japanese Journal of Applied Physics, Part 1: Regular Papers and Short Notes and Review Papers	2006	Low-energy computing, Noise tolerance, Power supply noise, Probabilistic CMOS, Probabilistic computing, Thermal noise	42	3
Entropic tension in crowded membranes	Martin Lindén, Pierre Sens, Rob Phillips	PLoS Computational Biology	2012		42	0
Stochastic thermodynamics with information reservoirs	Andre C. Barato, Udo Seifert	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2014		42	4
Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity	Alon Kaufman, Gideon Dror, Isaac Meilijson, Eytan Ruppin	PLoS Computational Biology	2006		42	1
Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator	Y. Apertet, H. Ouerdane, C. Goupil, Ph Lecoeur	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		42	0
Extended fluctuation-dissipation theorem for soft matter in stationary flow	Thomas Speck, Udo Seifert	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		42	0
Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces	Wei Min, Liang Jiang, Ji Yu, S. C. Kou, Hong Qian, X. Sunney Xie	Nano Letters	2005		42	2
Transmission gate-based approximate adders for inexact computing	Zhixi Yang, Jie Han, Fabrizio Lombardi	Proceedings of the 2015 IEEE/ACM International Symposium on Nanoscale Architectures, NANOARCH 2015	2015	approximate adder, approximate computing, error distance, error rate, low power	41	2
Transforming probabilities with combinational logic	Weikang Qian, Marc D. Riedel, Hongchao Zhou, Jehoshua Bruck	IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems	2011	Logic synthesis, probabilistic logic, probabilistic signals, random bit streams, stochastic bit streams	41	1
Role of mutual information in entropy production under information exchanges	Takahiro Sagawa, Masahito Ueda	New Journal of Physics	2013		41	1
Thermodynamic work gain from entanglement	Ken Funo, Yu Watanabe, Masahito Ueda	Physical Review A - Atomic, Molecular, and Optical Physics	2013		41	0
Optimal finite-time erasure of a classical bit	Patrick R. Zulkowski, Michael R. Deweese	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2014		41	0
Quantum work and the thermodynamic cost of quantum measurements	Sebastian Deffner, Juan Pablo Paz, Wojciech H. Zurek	Physical Review E	2016		41	8
Generating function formula of heat transfer in harmonic networks	Keiji Saito, Abhishek Dhar	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2011		41	0
Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers	T. Speck, Udo Seifert	European Physical Journal B	2005		41	0
Intensive thermodynamic parameters in nonequilibrium systems	Eric Bertin, Kirsten Martens, Olivier Dauchot, Michel Droz	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		40	0
Random-Pulse Machines	Sergio T. Ribeiro	IEEE Transactions on Electronic Computers	1967	Arithmetic operations, logical gate, neuromime systems, parallel processors, pulse-rate analog coding, random-pulse sequences	40	0
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions	David Shear	Journal of Theoretical Biology	1967		40	0
The (absence of a) relationship between thermodynamic and logical reversibility	O. J.E. Maroney	Studies in History and Philosophy of Science Part B - Studies in History and Philosophy of Modern Physics	2005	Computation, Information, Landauer's principle, Maxwell's demon, Statistical mechanics, Thermodynamics	40	1
The energy expansions of evolution	Olivia P. Judson	Nature Ecology and Evolution	2017		40	3
Discriminatory proofreading regimes in nonequilibrium systems	Arvind Murugan, David A. Huse, Stanislas Leibler	Physical Review X	2014	Biological physics, Materials science, Statistical physics	40	0
Thermodynamic and logical reversibilities revisited	Takahiro Sagawa	Journal of Statistical Mechanics: Theory and Experiment	2014	driven di-usive systems (theory)	40	7
Humans are not cooperative breeders but practice biocultural reproduction	Barry Bogin, Jared Bragg, Christopher Kuzawa	Annals of Human Biology	2014	Alloparenting, Childhood, Human life history, Lifetime reproductive effort, Longevity	40	8
On LICQ and the uniqueness of Lagrange multipliers	Gerd Wachsmuth	Operations Research Letters	2013	Constraint qualification, Lagrange multiplier, Optimality conditions	40	9
Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality	Daniel K. West, Peter D. Olmsted, Emanuele Paci	Journal of Chemical Physics	2006		40	0
Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes	A. Mossa, M. Manosas, N. Forns, J. M. Huguet, F. Ritort	Journal of Statistical Mechanics: Theory and Experiment	2009	Bio-polymers) (experiment), Bio-polymers) (theory), Fluctuations (experiment), Fluctuations (theory), Mechanical properties (DNA, Membranes, RNA	40	0
Representation of nonequilibrium steady states in large mechanical systems	Teruhisa S. Komatsu, Naoko Nakagawa, Shin Ichi Sasa, Hal Tasaki	Journal of Statistical Physics	2009	Excess entropy production, Nonequilibrium steady state, Probability distribution	40	0
Easiness Assumptions and Hardness Tests: Trading Time for Zero Error	Valentine Kabanets	Journal of Computer and System Sciences	2001		39	0
Progressive methylation of ageing histones by Dot1 functions as a timer	Dirk De Vos, Floor Frederiks, Marit Terweij, Tibor Van Welsem, Kitty F. Verzijlbergen, Ekaterina Iachina, Erik L. De Graaf, A. F. Maarten Altelaar, Gideon Oudgenoeg, Albert J.R. Heck, Jeroen Krijgsveld, Barbara M. Bakker, Fred Van Leeuwen	EMBO Reports	2011	H3K4, H3K79, Set1, cell cycle, chromatin	39	0
Logical computation on stochastic bit streams with linear finite-state machines	Peng Li, David J. Lilja, Weikang Qian, Marc D. Riedel, Kia Bazargan	IEEE Transactions on Computers	2014	Stochastic computing, finite-state machine (FSM), stochastic bit streams	39	0
Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors	Alexander M. Berezhkovskii, Attila Szabo	Journal of Chemical Physics	2013		39	0
Transfer entropy and transient limits of computation	Mikhail Prokopenko, Joseph T. Lizier	Scientific Reports	2014		39	3
Jarzynski equation for a simple quantum system: Comparing two definitions of work	A. Engel, R. Nolte	EPL	2007		39	0
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise	Paul Maragakis, Felix Ritort, Carlos Bustamante, Martin Karplus, Gavin Crooks	Journal of Chemical Physics	2008		39	7
Onsager coefficients of a Brownian Carnot cycle	Y. Izumida, K. Okuda	European Physical Journal B	2010		39	0
Role of external flow and frame invariance in stochastic thermodynamics	Thomas Speck, Jakob Mehl, Udo Seifert	Physical Review Letters	2008		39	1
Heat fluctuations in a nonequilibrium bath	J. R. Gomez-Solano, A. Petrosyan, S. Ciliberto	Physical Review Letters	2011		38	0
Computational selection of nucleic acid biosensors via a slip structure model	Bradley Hall, Jay R. Hesselberth, Andrew D. Ellington	Biosensors and Bioelectronics	2007	Aptamer beacon, Aptazyme, Computational selection, Signaling aptamer, Slip structure	38	0
Generating Binary Sequences for Stochastic Computing	P. Jeavons, D. A. Cohen, J. Shawe-Taylor	IEEE Transactions on Information Theory	1994	Stochastic computing, neural networks, pseudorandom sequences	38	1
SRAM for error-tolerant applications with dynamic energy-quality management in 28 nm CMOS	Fabio Frustaci, Mahmood Khayatzadeh, David Blaauw, Dennis Sylvester, Massimo Alioto	IEEE Journal of Solid-State Circuits	2015	Error-tolerant, SRAM, approximate computing, energy-quality tradeoff, error-free, near-threshold, resiliency, ultra-low power processing	38	1
Accuracy of direct gradient sensing by cell-surface receptors	Robert G. Endres, Ned S. Wingreen	Progress in Biophysics and Molecular Biology	2009	Chemotaxis, Fluctuation-dissipation theorem, Gradient sensing, Ligand-receptor binding, Noise	38	0
Reducing Intrinsic Biochemical Noise in Cells and Its Thermodynamic Limit	Hong Qian	Journal of Molecular Biology	2006	kinetics, nonequilibrium steady-state, phosphorylation energy hypothesis, proofreading, protein specificity	38	3
Improving free-energy estimates from unidirectional work measurements: Theory and experiment	Matteo Palassini, Felix Ritort	Physical Review Letters	2011		38	0
An effect of DNA sequence on nucleosome occupancy and removal	Xin Wang, Gene O. Bryant, Monique Floer, Dan Spagna, Mark Ptashne	Nature Structural and Molecular Biology	2011		37	1
Dynamics of cooperativity in chemical sensing among cell-surface receptors	Monica Skoge, Yigal Meir, Ned S. Wingreen	Physical Review Letters	2011		37	0
Finite-time erasing of information stored in fermionic bits	Giovanni Diana, G. Baris Bagci, Massimiliano Esposito	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2013		37	1
Entropy production of cyclic population dynamics	Benjamin Andrae, Jonas Cremer, Tobias Reichenbach, Erwin Frey	Physical Review Letters	2010		37	2
On the generation of cryptographically strong pseudo-random sequences	Adi Shamir	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	1981		36	1
Work fluctuations for a harmonic oscillator driven by an external random force	Sanjib Sabhapandit	EPL	2011		36	1
A spectral transform approach to stochastic circuits	Armin Alaghi, John P. Hayes	Proceedings - IEEE International Conference on Computer Design: VLSI in Computers and Processors	2012	Design methodology, logic synthesis, probabilistic methods, stochastic computing	36	0
Stochastic energetics for non-Gaussian processes	Kiyoshi Kanazawa, Takahiro Sagawa, Hisao Hayakawa	Physical Review Letters	2012		36	1
Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection	X. D. Shang, P. Tong, K. Q. Xia	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2005		36	0
On universality in ageing ferromagnets	Christophe Chatelain	Journal of Statistical Mechanics: Theory and Experiment	2004	coarseningpro cesses (theory)	36	0
Heat and work fluctuations for a harmonic oscillator	Sanjib Sabhapandit	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		35	0
Dynamics of a tracer granular particle as a nonequilibrium Markov process	Andrea Puglisi, Paolo Visco, Emmanuel Trizac, Frédéric Van Wijland	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2006		35	0
Thermodynamic cost of measurements	Léo Granger, Holger Kantz	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2011		35	1
Fluctuation theorem for the flashing ratchet model of molecular motors	D. Lacoste, K. Mallick	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		34	0
Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models	F. Douarche, S. Ciliberto, A. Petrosyan	Journal of Statistical Mechanics: Theory and Experiment	2005	Dynamical processes (experiment), Fluctuations (experiment), Fluctuations (theory), Mechanical properties (DNA, RNA, biopolymers) (experiment), membranes	34	0
Stochastic arithmetic implementations of neural networks with in situ learning	Jeffrey A. Dickson, Robert D. McLeod, Howard C. Card	IEEE International Conference on Neural Networks - Conference Proceedings	1993		34	2
Seflab: A lab for measuring software energy footprints	Miguel A. Ferreira, Eric Hoekstra, Bo Merkus, Bram Visser, Joost Visser	2013 2nd International Workshop on Green and Sustainable Software, GREENS 2013 - Proceedings	2013	Energy efficiency, Green products, Sotlware Engineering, lndex 1erms	34	5
Jarzynski equality for the Jepsen gas	I. Bena, C. Van Den Broeck, R. Kawai	Europhysics Letters	2005		34	0
Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels	Sylvia C. Tippmann, Robert Ivanek, Dimos Gaidatzis, Anne Schöler, Leslie Hoerner, Erik Van Nimwegen, Michael B. Stadler, Dirk Schübeler, Peter Stadler	Molecular Systems Biology	2012	RNA decay, chromatin, histone modifications, microRNA, transcriptional regulation	34	0
A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks	Shodhan Rao, Arjan van der Schaft, Bayu Jayawardhana	Journal of Mathematical Chemistry	2013	Equilibria, Linkage classes, Persistence conjecture, Schur complement, Weighted Laplacian matrix, Zero-deficiency networks	34	0
Fluctuation theorems in the presence of information gain and feedback	Sourabh Lahiri, Shubhashis Rana, A. M. Jayannavar	Journal of Physics A: Mathematical and Theoretical	2012		34	0
Entropy production and fluctuation theorems under feedback control: The molecular refrigerator model revisited	T. Munakata, M. L. Rosinberg	Journal of Statistical Mechanics: Theory and Experiment	2012	large deviations in non-equilibrium systems, stationary states, stochastic particle dynamics (theory)	34	0
Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States	Teruhisa S. Komatsu, Naoko Nakagawa, Shin ichi Sasa, Hal Tasaki	Journal of Statistical Physics	2011	Clausius relation, Excess heat, Nonequilibrium steady states	34	0
Higher coordination with less control-a result of information maximization in the sensorimotor loop	Keyan Zahedi, Nihat Ay, Ralf Der	Adaptive Behavior	2010	embodied artificial intelligence, information theory, predictive information, self-organized learning, sensorimotor loop	33	1
Effect of feedback on the fidelity of information transmission of time-varying signals	Wiet Hendrik De Ronde, Filipe Tostevin, Pieter Rein ten Wolde	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		33	3
Determining cortical landscapes	Jack W. Scannell	Nature	1997		33	0
Interpreting hippocampal function as recoding and forecasting	William B. Levy, Ashlie B. Hocking, Xiangbao Wu	Neural Networks	2005	CA3, Chaotic, Chunking, Cognition, Cognitive mapping, Context, Prediction, Randomization, Recoding, Synaptic modification, Trace conditioning, Transitive inference, Transverse patterning	33	0
Resolution of nested neuronal representations can be exponential in the number of neurons	Alexander Mathis, Andreas V.M. Herz, Martin B. Stemmler	Physical Review Letters	2012		33	0
Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes	S. Liepelt, R. Lipowsky	EPL	2007		33	0
Synthetic mechanochemical molecular swimmer	Ramin Golestanian	Physical Review Letters	2010		33	0
Factoring numbers in O(logn) arithmetic steps	Adi Shamir	Information Processing Letters	1979	Factoring algorithms, arithmetic complexity, prime numbers	32	10
A bound particle coupled to two thermostats	Hans C. Fogedby, Alberto Imparato	Journal of Statistical Mechanics: Theory and Experiment	2011	current fluctuations, exact results, large deviations in non-equilibrium systems, stochastic particle dynamics (theory)	32	0
A Simple Histone Code Opens Many Paths to Epigenetics	Kim Sneppen, Ian B. Dodd	PLoS Computational Biology	2012		32	2
Optical polarization evolution near a non-Hermitian degeneracy	M. V. Berry	Journal of Optics	2011	Stokes phenomenon, adiabatic, asymptotics, crystal optics, exceptional point, propagation, two-state	32	0
Work and dissipation fluctuations near the stochastic resonance of a colloidal particle	P. Jop, A. Petrosyan, S. Ciliberto	EPL	2008		32	0
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis	Armin Alaghi, John P. Hayes	IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems	2015	Logic synthesis, design methodology, probabilistic methods, stochastic circuit optimization, stochastic computing	32	0
Jarzynski equality modified in the linear feedback system	Youhei Fujitani, Hiroyuki Suzuki	Journal of the Physical Society of Japan	2010	Helmholtz free-energy, Separation theorem, The second law, Time-reversal process	32	1
Bona fide stochastic resonance: A view point from stochastic energetics	Debasis Dan, A. M. Jayannavar	Physica A: Statistical Mechanics and its Applications	2005	Bona fide resonance, Stochastic energetics, Stochastic resonance	32	0
Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network	Young Chul Kim, Michael A. Shanblatt	IEEE Transactions on Neural Networks	1995		31	0
Correlated evolution of nearby residues in drosophilid proteins	Benjamin Callahan, Richard A. Neher, Doris Bachtrog, Peter Andolfatto, Boris I. Shraiman	PLoS Genetics	2011		31	0
Helical logic	Ralph C. Merkle, K. Eric Drexler	Nanotechnology	1996		31	3
Optimal Prediction by Cellular Signaling Networks	Nils B. Becker, Andrew Mugler, Pieter Rein ten Wolde	Physical Review Letters	2015		31	0
Physical Limit to Concentration Sensing Amid Spurious Ligands	Thierry Mora	Physical Review Letters	2015		31	0
Darwinian demons, evolutionary complexity, and information maximization	David C. Krakauer	Chaos	2011		31	2
Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation	Michael A. Savageau, Rolf R. Freter	Biochemistry	1979		31	0
Could information theory provide an ecological theory of sensory processing?	Joseph J. Atick	Network: Computation in Neural Systems	2011		31	0
Quantum speed limits-primer, perspectives, and potential future directions	Michael R. Frey	Quantum Information Processing	2016	Entanglement, Geometrical state space perspective, Krotov algorithm, Mandelstam–Tamm inequality, Margolus–Levitin inequality, Non-unitary evolution, Open systems, Quantum Fisher information, Quantum brachistochrone, Quantum control, Quantum speed limit, Quantum state evolution	31	9
Performance of quantum Otto refrigerators with squeezing	Rui Long, Wei Liu	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2015		31	0
Transient fluctuation relations for time-dependent particle transport	Alexander Altland, Alessandro De Martino, Reinhold Egger, Boris Narozhny	Physical Review B - Condensed Matter and Materials Physics	2010		31	0
Far-from-equilibrium measurements of thermodynamic length	Edward H. Feng, Gavin Crooks	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		31	1
Article for analog vector algebra computation	Allen P. Mills, Bernard Yurke, Philip M. Platzman	BioSystems	1999	DNA computing, Hopfield network, Neural networks	30	1
Digital and analog gene circuits for biotechnology	Nathaniel Roquet, Timothy K. Lu	Biotechnology Journal	2014	Analog gene circuit, Digital gene circuit, Memory, Metabolic engineering, Synthetic biology	30	0
Stretching the limits of clock-gating efficiency in server-class processors	Hans Jacobson, Pradip Bose, Zhigang Hu, Alper Buyuktosunoglu, Victor Zyuban, Rick Eickemeyer, Lee Eisen, John Griswell, Doug Logan, Balaram Sinharoy, Joel Tendier	Proceedings - International Symposium on High-Performance Computer Architecture	2005		30	1
Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments	Ganhui Lan, Sonja Schulmeister, Victor Sourjik, Yuhai Tu	Molecular Systems Biology	2011	bacterial chemotaxis, high sensitivity to multiple signals, methylation crosstalk, mixed receptor cluster, sensory adaptation	30	0
Quantum dynamical field theory for nonequilibrium phase transitions in driven open systems	Jamir Marino, Sebastian Diehl	Physical Review B	2016		30	1
Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field	Arnab Saha, A. M. Jayannavar	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2008		30	0
Non-equilibrium steady states: Maximization of the Shannon entropy associated with the distribution of dynamical trajectories in the presence of constraints	Cécile Monthus	Journal of Statistical Mechanics: Theory and Experiment	2011	current fluctuations, optimization under uncertainty, stationary states, statistical inference	30	0
Closed-loop control strategy with improved current for a flashing ratchet	L. Dinis, J. M.R. Parrondo, F. J. Cao	Europhysics Letters	2005		30	0
Sampling adsorbing staircase walks using a new Markov chain decomposition method	Russell A. Martin, Dana Randall	Annual Symposium on Foundations of Computer Science - Proceedings	2000		29	1
Increasing utilization in modern warehouse-scale computers using Bubble-Up	Jason Mars, Lingjia Tang, Kevin Skadron, Mary Lou Soffa, Robert Hundt	IEEE Micro	2012	Bubble-up, performance degradation, quality of service, warehouse-scale computer	29	0
Innovation in gene regulation: The case of chromatin computation	Sonja J. Prohaska, David C. Krakauer, Peter Stadler	Journal of Theoretical Biology	2010	Chromatin, Evolution, Gene regulation	29	0
Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain	W. H. De Ronde, F. Tostevin, P. R. Ten Wolde	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2012		29	2
Integral quantum fluctuation theorems under measurement and feedback control	Ken Funo, Yu Watanabe, Masahito Ueda	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2013		29	0
Fluctuation theorems for an asymmetric rotor in a granular gas	Sylvain Joubaud, Detlef Lohse, Devaraj Van Der Meer	Physical Review Letters	2012		29	0
Fluctuations of the total entropy production in stochastic systems	S. Joubaud, N. B. Garnier, S. Ciliberto	EPL	2008		29	0
Exactly solvable model for driven dissipative systems	Yair Srebro, Dov Levine	Physical Review Letters	2004		28	0
Heat flow in chains driven by thermal noise	Hans C. Fogedby, Alberto Imparato	Journal of Statistical Mechanics: Theory and Experiment	2012	heat conduction, large deviations in non-equilibrium systems	28	0
The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate	Dominique Chu, David J. Barnes	Scientific Reports	2016		28	2
Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states	Ian B. Dodd, Kim Sneppen	Journal of Molecular Biology	2011	bistability, chromatin, nucleosome modification, positive feedback, stochastic modeling	28	1
Fundamental limits on sensing chemical concentrations with linear biochemical networks	Christopher C. Govern, Pieter Rein ten Wolde	Physical Review Letters	2012		28	3
An estimate of the total DNA in the biosphere	Hanna K.E. Landenmark, Duncan H. Forgan, Charles S. Cockell	PLoS Biology	2015		28	0
Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables	Andre C. Barato, David Hartich, Udo Seifert	Journal of Statistical Physics	2013	Entropy production, Mutual information, Non-Markov processes	28	4
An information-theoretic equality implying the Jarzynski relation	Vlatko Vedral	Journal of Physics A: Mathematical and Theoretical	2012		28	0
Dental and skeletal growth in early fossil hominins	M. Christopher Dean, Victoria S. Lucas	Annals of Human Biology	2009	Enamel, Growth, Hominin, Incremental markings, Teeth	28	0
Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome	Christopher W. Kuzawa	Human Evolutionary Biology	2010		28	1
Measurement of work in single-molecule pulling experiments	Alessandro Mossa, Sara De Lorenzo, Josep Maria Huguet, Felix Ritort	Journal of Chemical Physics	2009		28	0
Injected power and entropy flow in a heated granular gas	P. Visco, A. Puglisi, A. Barrat, E. Trizac, F. Van Wljland	Europhysics Letters	2005		28	0
On the work - Hamiltonian connection in manipulated systems	Luca Peliti	Journal of Statistical Mechanics: Theory and Experiment	2008	Large deviations in non-equilibrium systems	28	0
Invariant quantities in shear flow	A. Baule, R. M.L. Evans	Physical Review Letters	2008		28	0
Microrheology and the fluctuation theorem in dense colloids	L. G. Wilson, A. W. Harrison, W. C.K. Poon, A. M. Puertas	EPL	2011		27	0
Effective temperatures of a heated Brownian particle	L. Joly, S. Merabia, J. L. Barrat	EPL	2011		27	0
Curie's principle	A. F. Chalmers	British Journal for the Philosophy of Science	1970		27	0
The hidden simplicity of biology	Paul C.W. Davies, Sara Imari Walker	Reports on Progress in Physics	2016	biological laws, complexity, emergence	27	6
Uniform approximation and Bernstein polynomials with coefficients in the unit interval	Weikang Qian, Marc D. Riedel, Ivo Rosenberg	European Journal of Combinatorics	2011		27	0
How Far is Complex Balancing from Detailed Balancing?	Alicia Dickenstein, Mercedes Pérez Millán	Bulletin of Mathematical Biology	2011	Complex balancing, Detailed balancing, General kinetics, Mass action	27	0
Chemical sensing by nonequilibrium cooperative receptors	Monica Skoge, Sahin Naqvi, Yigal Meir, Ned S. Wingreen	Physical Review Letters	2013		27	0
Complex and detailed balancing of chemical reaction networks revisited	Arjan van der Schaft, Shodhan Rao, Bayu Jayawardhana	Journal of Mathematical Chemistry	2015	Complex balancing, Detailed balancing, Mass action kinetics, Reaction networks, Stability, Wegscheider conditions	27	3
Quantum discord and Maxwell’s demons	Wojciech Hubert Zurek	Physical Review A - Atomic, Molecular, and Optical Physics	2003		27	0
On the efficiency of path sampling methods for the calculation of free energies from non-equilibrium simulations	Wolfgang Lechner, Christoph Dellago	Journal of Statistical Mechanics: Theory and Experiment	2007	Driven diffusive systems (theory), Exact results	27	0
Inertial effects in nonequilibrium work fluctuations by a path integral approach	Tooru Taniguchi, E. G.D. Cohen	Journal of Statistical Physics	2008	Critical mass, Inertial effects, Laboratory and comoving frames, Nonequilibrium work fluctuations and theorem, Path integration	27	0
Dissipation Bound for Thermodynamic Control	Benjamin B. Machta	Physical Review Letters	2015		26	0
How much non-coding DNA do eukaryotes require?	Sebastian E. Ahnert, Andrei Zinovyev, Thomas M.A. Fink	Journal of Theoretical Biology	2008	Accelerated networks, Genetic networks, Minimum, Prokaryotes	26	0
Quantum Extension of the Jarzynski Relation: Analogy with Stochastic Dephasing	Shaul Mukamel	Physical Review Letters	2003		26	0
The stochastic pump current and the non-adiabatic geometrical phase	Jun Ohkubo	Journal of Statistical Mechanics: Theory and Experiment	2008	New applications of statistical mechanics, Transport processes/heat transfer (theory)	26	0
Fluctuation-preserving coarse graining for biochemical systems	Bernhard Altaner, Jürgen Vollmer	Physical Review Letters	2012		26	0
Probability density functions of work and heat near the stochastic resonance of a colloidal particle	Alberto Imparato, Pierre Jop, Artyom Petrosyan, Sergio Ciliberto	Journal of Statistical Mechanics: Theory and Experiment	2008	Brownian motion, Stochastic particle dynamics (experiment), Stochastic particle dynamics (theory), fluctuations (theory)	26	0
Generalized einstein or green-kubo relations for active biomolecular transport	Udo Seifert	Physical Review Letters	2010		25	0
Directing reprogramming to pluripotency by transcription factors	Kenjiro Adachi, Hans R. Schöler	Current Opinion in Genetics and Development	2012		25	0
Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation	M. Manosas, A. Mossa, N. Forns, J. M. Huguet, F. Ritort	Journal of Statistical Mechanics: Theory and Experiment	2009	Bio-polymers) (theory), Fluctuations (experiment), Fluctuations (theory), Mechanical properties (DNA, Membranes, RNA, bio-polymers) (experiment)	25	0
Information and maximum power in a feedback controlled Brownian ratchet	M. Feito, F. J. Cao	European Physical Journal B	2007		25	0
Recovery of state-specific potential of molecular motor from single-molecule trajectory	Shoichi Toyabe, Hiroshi Ueno, Eiro Muneyuki	EPL	2012		25	1
Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states	Jakob Mehl, Valentin Blickle, Udo Seifert, Clemens Bechinger	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		25	1
Generalised Einstein relation for hot Brownian motion	D. Chakraborty, M. V. Gnann, D. Rings, J. Glaser, F. Otto, F. Cichos, K. Kroy	EPL	2011		25	0
Reconstructing the free-energy landscape of a mechanically unfolded model protein	Alberto Imparato, Stefano Luccioli, Alessandro Torcini	Physical Review Letters	2007		25	0
Ueber die mechanischen Analogien des zweiten Hauptsatzes der Thermodynamik	Ludwig Boltzmann	Journal fur die Reine und Angewandte Mathematik	1887		24	1
Resolution lower bounds for the weak functional pigeonhole principle	Alexander A. Razborov	Theoretical Computer Science	2003		24	0
Variational formula for experimental determination of high-order correlations of current fluctuations in driven systems	Takahiro Nemoto, Shin Ichi Sasa	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2011		24	0
Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator	Debarati Chatterjee, Binny J. Cherayil	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		24	0
Reversible Computation and Reversible Programming Languages	Tetsuo Yokoyama	Electronic Notes in Theoretical Computer Science	2010	Reversible computing, Reversible programming languages	24	1
Evolutionary tradeoffs in cellular composition across diverse bacteria	Lawrence Wang, Jan P. Amend, John Doyle, Tori Hoehler, Chris Kempes	ISME Journal	2016		24	0
Design of a trichromatic cone array	Patrick Garrigan, Charles P. Ratliff, Jennifer M. Klein, Peter Sterling, David H. Brainard, Vijay Balasubramanian	PLoS Computational Biology	2010		24	0
Silent synapses, LTP, and the indirect parallel-fibre pathway: Computational consequences of optimal cerebellar noise-processing	John Porrill, Paul Dean	PLoS Computational Biology	2008		24	0
Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility	Song Ho Chong, Michio Otsuki, Hisao Hayakawa	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		24	1
Fluctuations and response in a non-equilibrium micron-sized system	Juan Ruben Gomez-Solano, Artyom Petrosyan, Sergio Ciliberto, Christian Maes	Journal of Statistical Mechanics: Theory and Experiment	2011	Brownian motion, Stationary states, Stochastic particle dynamics (experiment), Stochastic particle dynamics (theory)	24	0
Asymptotics of work distributions in nonequilibrium systems	A. Engel	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2009		24	0
Chemical Reaction Networks for Computing Polynomials	Sayed Ahmad Salehi, Keshab K. Parhi, Marc D. Riedel	ACS Synthetic Biology	2017	DNA strand-displacement reaction, Mass-Action kinetics, Molecular computing, Polynomials	24	2
Thermodynamics of natural selection II: Chemical Carnot cycles	Eric Smith	Journal of Theoretical Biology	2008	Carnot cycle, Landauer's principle, Natural selection, Thermodynamics	24	0
Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease	Omar Haq, Ronald M. Levy, Alexandre V. Morozov, Michael Andrec	BMC Bioinformatics	2009		23	0
Probabilistic algorithms for verification of polynomial identities	Jacob T. Schwartz	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	1979		23	0
Fundamental Costs in the Production and Destruction of Persistent Polymer Copies	Thomas E. Ouldridge, Pieter Rein ten Wolde	Physical Review Letters	2017		23	0
Microscopic heat from the energetics of stochastic phenomena	Ken Sekimoto	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2007		23	0
On anomalous diffusion and the out of equilibrium response function in one-dimensional models	D. Villamaina, A. Sarracino, G. Gradenigo, A. Puglisi, A. Vulpiani	Journal of Statistical Mechanics: Theory and Experiment	2011	Diffusion, Fluctuations (theory), Stochastic particle dynamics (theory), Transport properties (theory)	23	0
Information and flux in a feedback controlled Brownian ratchet	F. J. Cao, M. Feito, H. Touchette	Physica A: Statistical Mechanics and its Applications	2009	Brownian motor, Closed-loop, Feedback, Information, Ratchet	23	0
Randomness-efficient sampling within NC1	Alexander D. Healy	Computational Complexity	2008	Constant-depth circuits, Derandomization, Pseudorandomness, Random walks on expander graphs	22	1
Optimum protocol for fast-switching free-energy calculations	Philipp Geiger, Christoph Dellago	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2010		22	4
Maximum work extraction and implementation costs for nonequilibrium Maxwell's demons	Henrik Sandberg, Jean Charles Delvenne, Nigel J. Newton, Sanjoy K. Mitter	Physical Review E - Statistical, Nonlinear, and Soft Matter Physics	2014		22	0
The Szilard engine revisited: Entropy, macroscopic randomness, and symmetry breaking phase transitions	Juan M.R. Parrondo	Chaos	2001		22	0
Nonequilibrium thermodynamic analysis of squeezing	Fernando Galve, Eric Lutz	Physical Review A - Atomic, Molecular, and Optical Physics	2009		22	0
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport	Alexander M. Berezhkovskii, Sergey M. Bezrukov	Physical Review Letters	2008		22	0
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving	Thomas Speck	Journal of Physics A: Mathematical and Theoretical	2011		22	0
The distribution function of entropy flow in stochastic systems	A. Imparato, L. Peliti	Journal of Statistical Mechanics: Theory and Experiment	2007	Dynamical processes (theory), Fluctuations (theory)	22	0
Nonequilibrium steady state thermodynamics and fluctuations for stochastic systems	Tooru Taniguchi, E. G.D. Cohen	Journal of Statistical Physics	2008	Brownian particle, Electric and energy transfer models, Extended Onsager-Machlup theory, Nonequilibrium steady states, Time-reversal ambiguity, Work and heat definitions and fluctuations	22	0
Synthetic biology: It's an analog world	Herbert M. Sauro, Kyung Kim	Nature	2013		21	1
Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics	David A. Sivak, Gavin Crooks	Journal of Statistical Mechanics: Theory and Experiment	2011	exact results, fluctuations (theory)	21	1
Cooling classical particles with a microcanonical szilard engine	Rahul Marathe, J. M.R. Parrondo	Physical Review Letters	2010		21	1
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice	M. Antoniotti, C. Piazza, A. Policriti, M. Simeoni, B. Mishra	Theoretical Computer Science	2004	Biochemical models, Bisimulation, Collapsing, Hybrid automata	21	0
Leaderless deterministic chemical reaction networks	David Doty, Monir Hajiaghayi	Natural Computing	2015	Chemical reaction network, Leader election, Semilinear function, Time complexity	21	1
Chromatin proteins: Key responders to stress	Karen T. Smith, Jerry L. Workman	PLoS Biology	2012		21	0

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