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Showing below up to 134 results in range #1 to #134.
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- Simon Laughlin A simple coding procedure enhances a neuron’s information capacity Zeitschrift fur Naturforschung - Section C Journal of Biosciences 36, 910-912 (1981)
- Gilles Laurent A systems perspective on early olfactory coding Science 286, 723-728 (1999)
- David C. Van Essen A tension-based theory of morphogenesis and compact wiring in the central nervous system Nature 385, 313-318 (1997)
- Amy L. Bauernfeind, Sarah K. Barks, Tetyana Duka, Lawrence I. Grossman, Patrick R. Hof, Chet C. Sherwood Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance Brain Structure and Function 219, 1149-1167 (2014)
- Christopher J. Lee, Kris Irizarry Alternative splicing in the nervous system: An emerging source of diversity and regulation Biological Psychiatry 54, 771-776 (2003)
- Gerald L. Hazelbauer, Joseph J. Falke, John S. Parkinson Bacterial chemoreceptors: high-performance signaling in networked arrays Trends in Biochemical Sciences 33, 9-19 (2008)
- Sanjay Kumar, Mai Suan Li Biomolecules under mechanical force Physics Reports 486, 1-74 (2010)
- Erwin Frey, Klaus Kroy Brownian motion: A paradigm of soft matter and biological physics Annalen der Physik (Leipzig) 14, 20-50 (2005)
- Peter Reimann Brownian motors: Noisy transport far from equilibrium Physics Report 361, 57-265 (2002)
- Adelbert Ames CNS energy metabolism as related to function Brain Research Reviews 34, 42-68 (2000)
- Hugh R. Matthews, Johannes Reisert Calcium, the two-faced messenger of olfactory transduction and adaptation Current Opinion in Neurobiology 13, 469-475 (2003)
- Winston Timp, Andrew P. Feinberg Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host Nature Reviews Cancer 13, 497-510 (2013)
- John A. White, Jay T. Rubinstein, Alan R. Kay Channel noise in neurons Trends in Neurosciences 23, 131-137 (2000)
- Raphaël Margueron, Danny Reinberg Chromatin structure and the inheritance of epigenetic information Nature Reviews Genetics 11, 285-296 (2010)
- L. Dinis, J. M.R. Parrondo, F. J. Cao Closed-loop control strategy with improved current for a flashing ratchet Europhysics Letters 71, 536-541 (2005)
- Oliver J. Rando Combinatorial complexity in chromatin structure and function: Revisiting the histone code Current Opinion in Genetics and Development 22, 148-155 (2012)
- Zhanxin Wang, Dinshaw J. Patel Combinatorial readout of dual histone modifications by paired chromatin-associated modules Journal of Biological Chemistry 286, 18363-18368 (2011)
- Simon B. Laughlin, Terrence J. Sejnowski Communication in neuronal networks Science 301, 1870-1874 (2003)
- Christopher Jarzynski Comparison of far-from-equilibrium work relations Comptes Rendus Physique 8, 495-506 (2007)
- M. P. Young, J. W. Scannell, C. Cherniak Component-placement optimization in the brain Trends in Neurosciences 19, 413-415 (1996)
- Giulio Tononi Consciousness as integrated information: A provisional manifesto Biological Bulletin 215, 216-242 (2008)
- Leonard F. Koziol, Deborah Budding, Nancy Andreasen, Stefano D'Arrigo, Sara Bulgheroni, Hiroshi Imamizu, Masao Ito, Mario Manto, Cherie Marvel, Krystal Parker, Giovanni Pezzulo, Narender Ramnani, Daria Riva, Jeremy Schmahmann, Larry Vandervert, Tadashi Yamazaki Consensus paper: The cerebellum's role in movement and cognition Cerebellum 13, 151-177 (2014)
- Joseph J. Atick Could information theory provide an ecological theory of sensory processing? Network: Computation in Neural Systems 22, 4-44 (2011)
- Dazhong Xu, Jingxiang Bai, Qing Duan, Max Costa, Wei Dai Covalent modifications of histones during mitosis and meiosis Cell Cycle 8, 3688-3694 (2009)
- M. Christopher Dean, Victoria S. Lucas Dental and skeletal growth in early fossil hominins Annals of Human Biology 36, 545-561 (2009)
- Valentine Kabanets, Russell Impagliazzo Derandomizing polynomial identity tests means proving circuit lower bounds Computational Complexity 13, 1-46 (2004)
- Jack W. Scannell Determining cortical landscapes Nature 386, 452 (1997)
- Nathaniel Roquet, Timothy K. Lu Digital and analog gene circuits for biotechnology Biotechnology Journal 9, 597-608 (2014)
- Christoph Adami Digital genetics: Unravelling the genetic basis of evolution Nature Reviews Genetics 7, 109-118 (2006)
- Kenjiro Adachi, Hans R. Schöler Directing reprogramming to pluripotency by transcription factors Current Opinion in Genetics and Development 22, 416-422 (2012)
- Rolf Landauer Dissipation and noise immunity in computation and communication Nature 335, 779-784 (1988)
- Robert G. Shulman, Douglas L. Rothman, Kevin L. Behar, Fahmeed Hyder Energetic basis of brain activity: Implications for neuroimaging Trends in Neurosciences 27, 489-495 (2004)
- S. B. Laughlin Energy as a constraint on the coding and processing of sensory information Current Opinion in Neurobiology 11, 475-480 (2001)
- Eric J. Chaisson Energy flows in low-entropy complex systems Entropy 17, 8007-8018 (2015)
- Julia J. Harris, Renaud Jolivet, David Attwell Energy use constrains brain information processing Neuron 75, 762-777 (2012)
- Reini F. Luco, Mariano Allo, Ignacio E. Schor, Alberto R. Kornblihtt, Tom Misteli Epigenetics in alternative pre-mRNA splicing Cell 144, 16-26 (2011)
- C. Del Negro, J. M. Edeline Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) European Journal of Neuroscience 14, 1752 (2001)
- Michele Campisi, Peter Hänggi, Peter Talkner Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics) Reviews of Modern Physics 83, 771-791 (2011)
- Gerhard Roth, Ursula Dicke Evolution of the brain and intelligence Trends in Cognitive Sciences 9, 250-257 (2005)
- Stanislas Dehaene, Jean Pierre Changeux Experimental and Theoretical Approaches to Conscious Processing Neuron 70, 200-227 (2011)
- P. H. Von Hippel, O. G. Berg Facilitated target location in biological systems Journal of Biological Chemistry 264, 675-678 (1989)
- Teresa K. Barth, Axel Imhof Fast signals and slow marks: the dynamics of histone modifications Trends in Biochemical Sciences 35, 618-626 (2010)
- R. J. Gillespie Fifty years of the VSEPR model Coordination Chemistry Reviews 252, 1315-1327 (2008)
- G. Schreiber, G. Haran, H. X. Zhou Fundamental aspects of protein - Protein association kinetics Chemical Reviews 109, 839-860 (2009)
- Nina Fedoroff, Walter Fontana Genetic networks: Small numbers of big molecules Science 297, 1129-1131 (2002)
- Catherine B. Millar, Michael Grunstein Genome-wide patterns of histone modifications in yeast Nature Reviews Molecular Cell Biology 7, 657-666 (2006)
- B. M. Turner Histone acetylation as an epigenetic determinant of long-term transcriptional competence Cellular and Molecular Life Sciences 54, 21-31 (1998)
- Danielle S. Bassett, Edward T. Bullmore Human brain networks in health and disease Current Opinion in Neurology 22, 340-347 (2009)
- Enric Bufill, Jordi Agustí, Rafael Blesa Human neoteny revisited: The case of synaptic plasticity American Journal of Human Biology 23, 729-739 (2011)
- Barry Bogin, Jared Bragg, Christopher Kuzawa Humans are not cooperative breeders but practice biocultural reproduction Annals of Human Biology 41, 368-380 (2014)
- Christoph Adami Information theory in molecular biology Physics of Life Reviews 1, 3-22 (2004)
- György Buzsáki, Kai Kaila, Marcus Raichle Inhibition and Brain Work Neuron 56, 771-783 (2007)
- Mark A. Lever, Karyn L. Rogers, Karen G. Lloyd, Jörg Overmann, Bernhard Schink, Rudolf K. Thauer, Tori M. Hoehler, Bo Barker Jørgensen Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations FEMS Microbiology Reviews 39, 688-728 (2015)
- R. J. Ellis Macromolecular crowding: An important but neglected aspect of the intracellular environment Current Opinion in Structural Biology 11, 114-119 (2001)
- Armelle Corpet, Geneviève Almouzni Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information Trends in Cell Biology 19, 29-41 (2009)
- L. Chang, M. Karin Mammalian MAP kinase signalling cascades Nature 410, 37-40 (2001)
- Simon B. Laughlin Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye Progress in Retinal and Eye Research 13, 165-196 (1994)
- John Timler, Craig S. Lent Maxwell's demon and quantum-dot cellular automata Journal of Applied Physics 94, 1050-1060 (2003)
- Danesh Moazed Mechanisms for the inheritance of chromatin states Cell 146, 510-518 (2011)
- William R. Leonard, Marcia L. Robertson, J. Josh Snodgrass, Christopher W. Kuzawa Metabolic correlates of hominid brain evolution Comparative Biochemistry and Physiology - A Molecular and Integrative Physiology 136, 5-15 (2003)
- Tori M. Hoehler, Bo Barker Jørgensen Microbial life under extreme energy limitation Nature Reviews Microbiology 11, 83-94 (2013)
- David Meunier, Renaud Lambiotte, Edward T. Bullmore Modular and hierarchically modular organization of brain networks Frontiers in Neuroscience 4, (2010)
- David Andrieux, Pierre Gaspard Network and thermodynamic conditions for a single macroscopic current fluctuation theorem Comptes Rendus Physique 8, 579-590 (2007)
- David Attwell, Alasdair Gibb Neuroenergetics and the kinetic design of excitatory synapses Nature Reviews Neuroscience 6, 841-849 (2005)
- T. Chou, K. Mallick, R. K.P. Zia Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport Reports on Progress in Physics 74, (2011)
- Cizhong Jiang, B. Franklin Pugh Nucleosome positioning and gene regulation: Advances through genomics Nature Reviews Genetics 10, 161-172 (2009)
- Luke E. Ulrich, Eugene V. Koonin, Igor B. Zhulin One-component systems dominate signal transduction in prokaryotes Trends in Microbiology 13, 52-56 (2005)
- Kathryn E. Gardner, C. David Allis, Brian D. Strahl Operating on chromatin, a colorful language where context matters Journal of Molecular Biology 409, 36-46 (2011)
- K. H. Hoffmann, J. Burzler, A. Fischer, M. Schaller, S. Schubert Optimal Process Paths for Endoreversible Systems Journal of Non-Equilibrium Thermodynamics 28, 233-268 (2003)
- Olaf Sporns, Dante R. Chialvo, Marcus Kaiser, Claus C. Hilgetag Organization, development and function of complex brain networks Trends in Cognitive Sciences 8, 418-425 (2004)
- Jamie A. Hackett, Jan J. Zylicz, M. Azim Surani Parallel mechanisms of epigenetic reprogramming in the germline Trends in Genetics 28, 164-174 (2012)
- Catherine A. Musselman, Marie Eve Lalonde, Jacques Côté, Tatiana G. Kutateladze Perceiving the epigenetic landscape through histone readers Nature Structural and Molecular Biology 19, 1218-1227 (2012)
- Eckart Zitzler, Lothar Thiele, Marco Laumanns, Carlos M. Fonseca, Viviane Grunert Da Fonseca Performance assessment of multiobjective optimizers: An analysis and review IEEE Transactions on Evolutionary Computation 7, 117-132 (2003)
- Peter Sarkies, Julian E. Sale Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication Cellular and Molecular Life Sciences 69, 697-716 (2012)
- Takashi Ito, Shinji Okazaki Pushing the limits of lithography Nature 406, 1027-1031 (2000)
- Maciej Lewenstein Quantum mechanics: No more fields Nature Physics 11, 211-212 (2015)
- Michael R. Frey Quantum speed limits-primer, perspectives, and potential future directions Quantum Information Processing 15, 3919-3950 (2016)
- Yuliya Pylayeva-Gupta, Elda Grabocka, Dafna Bar-Sagi RAS oncogenes: Weaving a tumorigenic web Nature Reviews Cancer 11, 761-774 (2011)
- Louis Sokoloff RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM Journal of Neurochemistry 29, 13-26 (1977)
- Bilal Haider, David A. McCormick Rapid Neocortical Dynamics: Cellular and Network Mechanisms Neuron 62, 171-189 (2009)
- Miyong Yun, Jun Wu, Jerry L. Workman, Bing Li Readers of histone modifications Cell Research 21, 564-578 (2011)
- Vijay Balasubramanian, Peter Sterling Receptive fields and functional architecture in the retina Journal of Physiology 587, 2753-2767 (2009)
- Marco Magistri, Mohammad Ali Faghihi, Georges St Laurent, Claes Wahlestedt Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcripts Trends in Genetics 28, 389-396 (2012)
- Joseph W. Thornton Resurrecting ancient genes: Experimental analysis of extinct molecules Nature Reviews Genetics 5, 366-375 (2004)
- Danica Jakovcevic, David R. Harder Role of Astrocytes in Matching Blood Flow to Neuronal Activity Current Topics in Developmental Biology 79, 75-97 (2007)
- Alex Fornito, Andrew Zalesky, Christos Pantelis, Edward T. Bullmore Schizophrenia, neuroimaging and connectomics NeuroImage 62, 2296-2314 (2012)
- Danielle Smith Bassett, Ed Bullmore Small-world brain networks Neuroscientist 12, 512-523 (2006)
- Anthony T. Annunziato Split decision: What happens to nucleosomes during DNA replication? Journal of Biological Chemistry 280, 12065-12068 (2005)
- Sarah Marzen, Hernan G. Garcia, Rob Phillips Statistical mechanics of Monod-Wyman-Changeux (MWC) models Journal of Molecular Biology 425, 1433-1460 (2013)
- Hao Ge, Min Qian, Hong Qian Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics Physics Reports 510, 87-118 (2012)
- Johan Paulsson Summing up the noise in gene networks Nature 427, 415-418 (2004)
- Herbert M. Sauro, Kyung Kim Synthetic biology: It's an analog world Nature 497, 572-573 (2013)
- Euan R. Kay, David A. Leigh, Francesco Zerbetto Synthetic molecular motors and mechanical machines Angewandte Chemie - International Edition 46, 72-191 (2007)
- Eric van der Graaff, Thomas Laux, Stefan A. Rensing The WUS homeobox-containing (WOX) protein family Genome Biology 10, (2009)
- Bryan M. Turner The adjustable nucleosome: An epigenetic signaling module Trends in Genetics 28, 436-444 (2012)
- N. M. Van Strien, M. P. Witter, N. L.M. Cappaert The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network Nature Reviews Neuroscience 10, 272-282 (2009)
- Randy L. Buckner, Jessica R. Andrews-Hanna, Daniel L. Schacter The brain's default network: Anatomy, function, and relevance to disease Annals of the New York Academy of Sciences 1124, 1-38 (2008)
- Agnieszka Gacek, Joseph Strauss The chromatin code of fungal secondary metabolite gene clusters Applied Microbiology and Biotechnology 95, 1389-1404 (2012)
- Bernard J. Baars The conscious access hypothesis: Origins and recent evidence Trends in Cognitive Sciences 6, 47-52 (2002)
- Alain Barrat, Marc Barthélemy, Alessandro Vespignani The effects of spatial constraints on the evolution of weighted complex networks Journal of Statistical Mechanics: Theory and Experiment , 49-68 (2005)
- Olivia P. Judson The energy expansions of evolution Nature Ecology and Evolution 1, (2017)
- Hanne Stensola, Tor Stensola, Trygve Solstad, Kristian FrØland, May Britt Moser, Edvard I. Moser The entorhinal grid map is discretized Nature 492, 72-78 (2012)
- R. H. Masland The fundamental plan of the retina Nature Neuroscience 4, 877-886 (2001)
- Paul C.W. Davies, Sara Imari Walker The hidden simplicity of biology Reports on Progress in Physics 79, (2016)
- Olaf Sporns, Giulio Tononi, Rolf Kötter The human connectome: A structural description of the human brain PLoS Computational Biology 1, 0245-0251 (2005)
- Hugo Touchette The large deviation approach to statistical mechanics Physics Reports 478, 1-69 (2009)
- Leah Krubitzer The magnificent compromise: cortical field evolution in mammals. Neuron 56, 201-208 (2007)
- David Attwell, Costantino Iadecola The neural basis of functional brain imaging signals Trends in Neurosciences 25, 621-625 (2002)
- Markus Meister, Michael J. Berry The neural code of the retina Neuron 22, 435-450 (1999)
- Giulio Tononi, Christof Koch The neural correlates of consciousness: An update Annals of the New York Academy of Sciences 1124, 239-261 (2008)
- Kensaku Mori, Hiroshi Nagao, Yoshihiro Yoshihara The olfactory bulb: Coding and processing of odor molecule information Science 286, 711-715 (1999)
- Peter Bauer, Alan Thorpe, Gilbert Brunet The quiet revolution of numerical weather prediction Nature 525, 47-55 (2015)
- Païkan Marcaggi, Daniela Billups, David Attwell The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses Journal of Physiology 552, 89-107 (2003)
- Priscilla E.M. Purnick, Ron Weiss The second wave of synthetic biology: From modules to systems Nature Reviews Molecular Cell Biology 10, 410-422 (2009)
- Achim Peters The selfish brain: Competition for energy resources American Journal of Human Biology 23, 29-34 (2011)
- Adam Kepecs, Naoshige Uchida, Zachary F. Mainen The sniff as a unit of olfactory processing Chemical Senses 31, 167-179 (2006)
- N. A. Sinitsyn The stochastic pump effect and geometric phases in dissipative and stochastic systems Journal of Physics A: Mathematical and Theoretical 42, (2009)
- Matthew P. Scott, John W. Tamkun, George W. Hartzell The structure and function of the homeodomain BBA - Reviews on Cancer 989, 25-48 (1989)
- J. A. Garcia-Horsman, B. Barquera, J. Rumbley, J. Ma, R. B. Gennis The superfamily of heme-copper respiratory oxidases Journal of Bacteriology 176, 5587-5600 (1994)
- Charles H. Bennett The thermodynamics of computation-a review International Journal of Theoretical Physics 21, 905-940 (1982)
- Thomas E. Ouldridge, Christopher C. Govern, Pieter Rein ten Wolde Thermodynamics of Computational Copying in Biochemical Systems Physical Review X 7, (2017)
- Thomas E. Ouldridge, Christopher C. Govern, Pieter Rein ten Wolde Thermodynamics of computational copying in biochemical systems Physical Review X 7, (2017)
- Juan M.R. Parrondo, Jordan M. Horowitz, Takahiro Sagawa Thermodynamics of information Nature Physics 11, 131-139 (2015)
- Hong Qian, Daniel A. Beard Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium Biophysical Chemistry 114, 213-220 (2005)
- Steen Rasmussen, Liaohai Chen, David Deamer, David C. Krakauer, Norman H. Packard, Mark A. Bedau, Peter Stadler Transitions from Nonliving to Living Matter Science 303, 963-965 (2004)
- T. Jenuwein, C. D. Allis Translating the histone code Science 293, 1074-1080 (2001)
- Seth Lloyd Ultimate physical limits to computation Nature 406, 1047-1054 (2000)
- Eve Marder, Jean Marc Goaillard Variability, compensation and homeostasis in neuron and network function Nature Reviews Neuroscience 7, 563-574 (2006)
- A. Crisanti, F. Ritort Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence Journal of Physics A: Mathematical and General 36, (2003)
- Alex Fornito, Edward T. Bullmore What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? Current Opinion in Psychiatry 23, 239-249 (2010)
- Nikos K. Logothetis What we can do and what we cannot do with fMRI Nature 453, 869-878 (2008)
- Alberto Imparato, Luca Peliti Work and heat probability distributions in out-of-equilibrium systems Comptes Rendus Physique 8, 556-566 (2007)
- Karl J. Indest, Wallace G. Buchholz, Jim R. Faeder, Peter Setlow Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity Journal of Food Science 74, (2009)
- Michael Grunstein Yeast heterochromatin: Regulation of its assembly and inheritance by histones Cell 93, 325-328 (1998)
