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From Thermodynamics of Computation
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List of results
- The lac repressor displays facilitated diffusion in living cells + (Petter Hammar)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Energy conversion by molecular motors coupled to nucleotide hydrolysis + (Reinhard Lipowsky)
- Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints + (Anirikh Chakrabarti)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina + (Peter B. Detwiler)
- Energy allocation between brain and body during ontogenetic development + (Britta Kubera)
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing + (Gunnar Schotta)
- Cube v4: From performance report explorer to performance analysis tool + (Pavel Saviankou)
- The microvascular system of the striate and extrastriate visual cortex of the macaque + (Bruno Weber)
- Calcium signalling and regulation in olfactory neurons + (Anna Menini)
- Reachability bounds for chemical reaction networks and strand displacement systems + (Anne Condon)
- Less haste, less waste: On recycling and its limits in strand displacement systems + (Anne Condon)
- Revision of Dietary Reference Intakes for energy in preschool-age children + (Nancy F. Butte)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- The 'independent components' of natural scenes are edge filters + (Anthony J. Bell)
- Thermodynamics of prediction + (Susanne Still)
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums + (Anthony J. Genot)
- The connection between logical and thermodynamic irreversibility + (James Ladyman)
- Split decision: What happens to nucleosomes during DNA replication? + (Anthony T. Annunziato)
- Small-world properties of nonlinear brain activity in schizophrenia + (Mikail Rubinov)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)
- Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation + (Bart P. Vos)
- Histone H3 tail clipping regulates gene expression + (Helena Santos-Rosa)
- Application of importance sampling to the computation of large deviations in nonequilibrium processes + (Anupam Kundu)
- Large deviations of heat flow in harmonic chains + (Anupam Kundu)
- Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation + (Ara Kocharyan)
- Integrated information increases with fitness in the evolution of animats + (Jeffrey A. Edlund)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- Complex and detailed balancing of chemical reaction networks revisited + (Arjan van der Schaft)
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks + (Shodhan Rao)
- A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions + (Marcus Kaiser)
- Building programmable jigsaw puzzles with RNA + (Arkadiusz Chworos)
- Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium + (Andrea Parmeggiani)
- Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information + (Armelle Corpet)
- Thermodynamic efficiency of information and heat flow + (Armen E. Allahverdyan)
- Local potential connectivity in cat primary visual cortex + (Armen Stepanyants)
- STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis + (Armin Alaghi)
- Tomographic testing and validation of probabilistic circuits + (Alexandru Paler)
- Exploiting correlation in stochastic circuit design + (Armin Alaghi)
- A spectral transform approach to stochastic circuits + (Armin Alaghi)
- The intractability of resolution + (Armin Haken)
- Work probability distribution and tossing a biased coin + (Arnab Saha)
- Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field + (Arnab Saha)
- Entropy production theorems and some consequences + (Arnab Saha)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)
- Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions + (Petr Chvosta)
- Optimized free energies from bidirectional single-molecule force spectroscopy + (David D.L. Minh)
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models + (Bernhard Altaner)
- Fluctuations and response in a non-equilibrium micron-sized system + (Juan Ruben Gomez-Solano)