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From Thermodynamics of Computation
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List of results
- Darwinian demons, evolutionary complexity, and information maximization + (David C. Krakauer)
- Innovation in gene regulation: The case of chromatin computation + (Sonja J. Prohaska)
- Challenges for complexity measures: A perspective from social dynamics and collective social computation + (Jessica C. Flack)
- Defining genes: A computational framework + (Sonja J. Prohaska)
- A tension-based theory of morphogenesis and compact wiring in the central nervous system + (David C. Van Essen)
- Distributed hierarchical processing in the primate cerebral cortex + (Daniel J. Felleman)
- Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit + (Brian Lambson)
- Optimized free energies from bidirectional single-molecule force spectroscopy + (David D.L. Minh)
- Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism + (David D.L. Minh)
- Multidimensional potentials of mean force from biased experiments along a single coordinate + (David D.L. Minh)
- Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments + (John D. Chodera)
- Free-energy reconstruction from experiments performed under different biasing programs + (David D.L. Minh)
- Transitions from Nonliving to Living Matter + (Steen Rasmussen)
- Deterministic Function Computation with Chemical Reaction Network + (Ho Lin Chen)
- Deterministic function computation with chemical reaction networks + (Ho Lin Chen)
- Leaderless deterministic chemical reaction networks + (David Doty)
- Genetic Algorithms, Tournament Selection, and the Effects of Noise + (Brad L Miller)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- A quantitative analysis of sniffing strategies in rats performing odor detection tasks + (Steven L. Youngentob)
- Quantum thermodynamics for a model of an expanding Universe + (Nana Liu)
- A simple population protocol for fast robust approximate majority + (Dana Angluin)
- Fast computation by population protocols with a leader + (Dana Angluin)
- Minimal model for Brownian vortexes + (Bo Sun)
- Design of a trichromatic cone array + (Patrick Garrigan)
- Structural properties of the Caenorhabditis elegans neuronal network + (Lav R. Varshney)
- The free energy requirements of biological organisms; implications for evolution + (David H. Wolpert)
- Efficiency of cellular information processing + (David Hartich)
- Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables + (David Hartich)
- The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate + (Dominique Chu)
- Sparse coding with an overcomplete basis set: A strategy employed by V1? + (Bruno A. Olshausen)
- A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory + (David J. Katz)
- An architecture for fault-tolerant computation with stochastic logic + (Weikang Qian)
- Stochastic functions using sequential logic + (Naman Saraf)
- Computation on stochastic bit streams digital image processing case studies + (Peng Li)
- A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic + (Peng Li)
- Logical computation on stochastic bit streams with linear finite-state machines + (Peng Li)
- Variable channel expression in identified single and electrically coupled neurons in different animals + (David J. Schulz)
- Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states + (Gatien Verley)
- Glucans monomer-exchange dynamics as an open chemical network + (Riccardo Rao)
- Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain + (Gatien Verley)
- A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy + (David M. Cohen)
- Neurophysiological architecture of functional magnetic resonance images of human brain + (Raymond Salvador)
- Modular and hierarchically modular organization of brain networks + (David Meunier)
- Age-related changes in modular organization of human brain functional networks + (David Meunier)
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes + (Andre Cardoso Barato)
- Role of Astrocytes in Matching Blood Flow to Neuronal Activity + (Danica Jakovcevic)
- Localization transitions in non-hermitian quantum mechanics + (Naomichi Hatano)
- Fluctuation-dissipation theorems and entropy production in relaxational systems + (Leticia F. Cugliandolo)
- Nucleosome organization in the Drosophila genome + (Travis N. Mavrich)
- Structure and function of a human TAF(II)250 double bromodomain module + (Raymond H. Jacobson)
- An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions + (David Shear)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)