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From Thermodynamics of Computation
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List of results
- Cooperativity, sensitivity, and noise in biochemical signaling + (William Bialek)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- A model for transmission of the H3K27me3 epigenetic mark + (Klaus H. Hansen)
- Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system + (John C. Anderson)
- Fly photoreceptors demonstrate energy-information trade-offs in neural coding + (Jeremy E. Niven)
- Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye + (Simon B. Laughlin)
- Communication in neuronal networks + (Simon B. Laughlin)
- ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light + (Haruhisa Okawa)
- A simple coding procedure enhances a neuron’s information capacity + (Simon Laughlin)
- Thermodynamics of trajectories and local fluctuation theorems for harmonic quantum networks + (Simon Pigeon)
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits + (Danielle S. Bassett)
- Visual DSD: A design and analysis tool for DNA strand displacement systems + (Matthew R. Lakin)
- Quantum szilard engine + (Sang Wook Kim)
- Kinetic versus energetic discrimination in biological copying + (Pablo Sartori)
- TrxG and PcG proteins but not methylated histones remain associated with DNA through replication + (Svetlana Petruk)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Tracking uncertainty with probabilistic logic circuit testing + (Smita Krishnaswamy)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- The Phi-Bot: A robot controlled by a slime mould + (Soichiro Tsuda)
- Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility + (Song Ho Chong)
- Innovation in gene regulation: The case of chromatin computation + (Sonja J. Prohaska)
- Defining genes: A computational framework + (Sonja J. Prohaska)
- Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments + (Ganhui Lan)
- Age-related changes in modular organization of human brain functional networks + (David Meunier)
- Efficiency and cost of economical brain functional networks + (Sophie Achard)
- Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality + (Jan Liphardt)
- Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification + (Sophie Rousseaux)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Sophie Rousseaux)
- Diffusion of transcription factors can drastically enhance the noise in gene expression + (Jeroen S. Van Zon)
- Information thermodynamics on causal networks + (Sosuke Ito)
- Maxwell's demon in biochemical signal transduction with feedback loop + (Sosuke Ito)
- Fluctuation theorems in the presence of information gain and feedback + (Sourabh Lahiri)
- Entropy production theorems and some consequences + (Arnab Saha)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)
- Fluctuation relations for current components in mesoscopic electric circuits + (Sriram Ganeshan)
- Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle + (Nitin Kumar)
- Stochasticity of gene products from transcriptional pulsing + (Srividya Iyer-Biswas)
- Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework + (Stanislas Dehaene)
- Experimental and Theoretical Approaches to Conscious Processing + (Stanislas Dehaene)
- A synthetic oscillatory network of transcriptional regulators + (Michael B. Elowitz)
- Discriminatory proofreading regimes in nonequilibrium systems + (Arvind Murugan)
- The Value of Information for Populations in Varying Environments + (Olivier Rivoire)
- Transitions from Nonliving to Living Matter + (Steen Rasmussen)
- The WUS homeobox-containing (WOX) protein family + (Eric van der Graaff)
- The Phi-Bot: A robot controlled by a slime mould + (Soichiro Tsuda)
- Real spectra in non-hermitian hamiltonians having PT symmetry + (Carl M. Bender)
- Thermophoretic depletion follows boltzmann distribution + (Stefan Duhr)
- Nucleosomes are well positioned in exons and carry characteristic histone modifications + (Robin Andersson)
- A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation + (Stefan Schuster)
- Consensus paper: The cerebellum's role in movement and cognition + (Leonard F. Koziol)
- Optical realization of relativistic non-Hermitian quantum mechanics + (Stefano Longhi)
- Invisibility in non-Hermitian tight-binding lattices + (Stefano Longhi)