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Thermodynamics of Computation

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Showing 250 pages using this property.
U
Untangling Complex Systems: A Grand Challenge for Science +
Book  +
P
Physics of Self-Organization and Evolution +
book  +
I
Information, Physics, and Computation +
book  +
A
An Introduction to Kolmogorov Complexity and Its Applications +
book  +
I
Information theory: a tutorial introduction (book) +
book  +
E
Elements of Information Theory +
book  +
T
The Datacenter as a Computer +
book  +
C
Compendium of the Foundations of Classical Statistical Physics +
book_section  +
B
Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome +
book_section  +
O
Olfactory Bulb +
book_section  +
T
The Phi-Bot: A robot controlled by a slime mould +
book_section  +
A
Amorphous computing +
book_section  +
An introduction to population protocols +
book_section  +
R
Reducibility among combinatorial problems +
book_section  +
I
Information Thermodynamics: Maxwell's Demon in Nonequilibrium Dynamics +
book_section  +
R
Retina +
book_section  +
T
The Taxonomy Project +
book_section  +
Q
Quantum entropy production as a measure of irreversibility +
conference_proceedings  +
R
Recent Development in Efficient Adiabatic Logic Circuits and Power Analysis with CMOS Logic +
conference_proceedings  +
E
Entropy production for mechanically or chemically driven biomolecules +
conference_proceedings  +
Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows +
conference_proceedings  +
F
Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer +
conference_proceedings  +
H
Hamiltonian derivations of the generalized Jarzynski equalities under feedback control +
conference_proceedings  +
A
Application-level correctness and its impact on fault tolerance +
conference_proceedings  +
S
Seflab: A lab for measuring software energy footprints +
conference_proceedings  +
A
A spectral transform approach to stochastic circuits +
conference_proceedings  +
T
Transmission gate-based approximate adders for inexact computing +
conference_proceedings  +
Tomographic testing and validation of probabilistic circuits +
conference_proceedings  +
A
Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits +
conference_proceedings  +
S
Stochastic arithmetic implementations of neural networks with in situ learning +
conference_proceedings  +
Stochastic functions using sequential logic +
conference_proceedings  +
O
Optimizing Google's warehouse scale computers: The NUMA experience +
conference_proceedings  +
C
Cube v4: From performance report explorer to performance analysis tool +
conference_proceedings  +
A
A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic +
conference_proceedings  +
M
Modelling, simulating and verifying Turing-powerful strand displacement systems +
conference_proceedings  +
D
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome +
conference_proceedings  +
F
Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees +
conference_proceedings  +
C
Computation in networks of passively mobile finite-state sensors +
conference_proceedings  +
A
Asynchronous computation with molecular reactions +
conference_proceedings  +
Analyzing molecular reaction networks: From pathways to chemical organizations +
conference_proceedings  +
T
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1 +
conference_proceedings  +
E
Efficient checking of computations +
conference_proceedings  +
R
Randomness-efficient sampling within NC1 +
conference_proceedings  +
O
On the generation of cryptographically strong pseudo-random sequences +
conference_proceedings  +
C
Correcting errors beyond the Guruswami-Sudan radius in polynomial time +
conference_proceedings  +
S
Size at birth, postnatal growth and risk of obesity +
conference_proceedings  +
N
Neuron-glia metabolic coupling and plasticity +
conference_proceedings  +
S
Second law of thermodynamics with discrete quantum feedback control +
conference_proceedings  +
D
DNA as a universal substrate for chemical kinetics (Extended Abstract) +
conference_proceedings  +
T
The computationally complete ant colony: Global coordination in a system with no hierarchy +
conference_proceedings  +
P
Probabilistic algorithms for verification of polynomial identities +
conference_proceedings  +
N
Novel algorithms for fast statistical analysis of scaled circuits +
conference_proceedings  +
T
The synthesis of robust polynomial arithmetic with stochastic logic +
conference_proceedings  +
C
Compiler optimization on instruction scheduling for low power +
conference_proceedings  +
A
Approximate computing: An emerging paradigm for energy-efficient design +
conference_proceedings  +
M
Methods for quantifying the informational structure of sensory and motor data +
conference_proceedings  +
E
Exploiting correlation in stochastic circuit design +
conference_proceedings  +
S
Stretching the limits of clock-gating efficiency in server-class processors +
conference_proceedings  +
R
Run-time exploitation of application dynamism for energy-efficient exascale computing (READEX) +
conference_proceedings  +
E
Efficient turing-universal computation with DNA polymers +
conference_proceedings  +
T
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice +
conference_proceedings  +
L
Leveraging program equivalence for adaptive program repair: Models and first results +
conference_proceedings  +
S
Strand algebras for DNA computing +
conference_proceedings  +
D
Disjointness is hard in the multiparty number-on-the-forehead model +
conference_proceedings  +
U
Unbalanced expanders and randomness extractors from parvaresh-vardy codes +
conference_proceedings  +
O
On the solution to numerical problems using stochastic arithmetic +
conference_proceedings  +
A
A cost/speed/reliability tradeoff to erasing +
conference_proceedings  +
E
Exploiting Soft Computing for Increased Fault Tolerance +
conference_proceedings  +
A
Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic +
conference_proceedings  +
L
Less haste, less waste: On recycling and its limits in strand displacement systems +
conference_proceedings  +
E
Expanders, randomness, or time versus space: Extended abstract +
conference_proceedings  +
R
Resolution lower bounds for the weak functional pigeonhole principle +
conference_proceedings  +
N
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport +
generic  +
W
Work and heat probability distributions in out-of-equilibrium systems +
generic  +
T
Thermodynamics of information +
generic  +
E
Energy as a constraint on the coding and processing of sensory information +
generic  +
T
Thermodynamics of Computational Copying in Biochemical Systems +
generic  +
E
Energy use constrains brain information processing +
generic  +
C
Comparison of far-from-equilibrium work relations +
generic  +
B
Brownian motors: Noisy transport far from equilibrium +
generic  +
C
Closed-loop control strategy with improved current for a flashing ratchet +
generic  +
S
Synthetic molecular motors and mechanical machines +
generic  +
B
Biomolecules under mechanical force +
generic  +
O
Optimal Process Paths for Endoreversible Systems +
generic  +
V
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence +
generic  +
Q
Quantum speed limits-primer, perspectives, and potential future directions +
generic  +
R
Role of Astrocytes in Matching Blood Flow to Neuronal Activity +
generic  +
T
The magnificent compromise: cortical field evolution in mammals. +
generic  +
The neural basis of functional brain imaging signals +
generic  +
A
Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance +
generic  +
T
The effects of spatial constraints on the evolution of weighted complex networks +
generic  +
The sniff as a unit of olfactory processing +
generic  +
M
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye +
generic  +
T
The brain's default network: Anatomy, function, and relevance to disease +
generic  +
A
Alternative splicing in the nervous system: An emerging source of diversity and regulation +
generic  +
E
Experimental and Theoretical Approaches to Conscious Processing +
generic  +
T
The human connectome: A structural description of the human brain +
generic  +
A
A simple coding procedure enhances a neuron’s information capacity +
generic  +
O
Organization, development and function of complex brain networks +
generic  +
C
CNS energy metabolism as related to function +
generic  +
R
Receptive fields and functional architecture in the retina +
generic  +
C
Could information theory provide an ecological theory of sensory processing? +
generic  +
N
Neuroenergetics and the kinetic design of excitatory synapses +
generic  +
R
Rapid Neocortical Dynamics: Cellular and Network Mechanisms +
generic  +
D
Determining cortical landscapes +
generic  +
T
The thermodynamics of computation-a review +
generic  +
R
RAS oncogenes: Weaving a tumorigenic web +
generic  +
T
Transitions from Nonliving to Living Matter +
generic  +
M
Mammalian MAP kinase signalling cascades +
generic  +
O
One-component systems dominate signal transduction in prokaryotes +
generic  +
T
The large deviation approach to statistical mechanics +
generic  +
C
Consciousness as integrated information: A provisional manifesto +
generic  +
P
Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication +
generic  +
C
Chromatin structure and the inheritance of epigenetic information +
generic  +
T
The superfamily of heme-copper respiratory oxidases +
generic  +
I
Information theory in molecular biology +
generic  +
T
The hidden simplicity of biology +
generic  +
The neural correlates of consciousness: An update +
generic  +
P
Parallel mechanisms of epigenetic reprogramming in the germline +
generic  +
E
Epigenetics in alternative pre-mRNA splicing +
generic  +
R
Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcripts +
generic  +
G
Genome-wide patterns of histone modifications in yeast +
generic  +
C
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host +
generic  +
Y
Yeast heterochromatin: Regulation of its assembly and inheritance by histones +
generic  +
M
Mechanisms for the inheritance of chromatin states +
generic  +
D
Digital and analog gene circuits for biotechnology +
generic  +
S
Synthetic biology: It's an analog world +
generic  +
D
Derandomizing polynomial identity tests means proving circuit lower bounds +
generic  +
B
Brownian motion: A paradigm of soft matter and biological physics +
generic  +
T
The stochastic pump effect and geometric phases in dissipative and stochastic systems +
generic  +
E
Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics) +
generic  +
C
Communication in neuronal networks +
generic  +
D
Dental and skeletal growth in early fossil hominins +
generic  +
W
What we can do and what we cannot do with fMRI +
generic  +
A
A tension-based theory of morphogenesis and compact wiring in the central nervous system +
generic  +
M
Modular and hierarchically modular organization of brain networks +
generic  +
C
Channel noise in neurons +
generic  +
S
Schizophrenia, neuroimaging and connectomics +
generic  +
T
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network +
generic  +
A
A systems perspective on early olfactory coding +
generic  +
M
Metabolic correlates of hominid brain evolution +
generic  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
generic  +
W
What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? +
generic  +
T
The conscious access hypothesis: Origins and recent evidence +
generic  +
The entorhinal grid map is discretized +
generic  +
The selfish brain: Competition for energy resources +
generic  +
I
Inhibition and Brain Work +
generic  +
V
Variability, compensation and homeostasis in neuron and network function +
generic  +
T
The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses +
generic  +
E
Energetic basis of brain activity: Implications for neuroimaging +
generic  +
R
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM +
generic  +
H
Humans are not cooperative breeders but practice biocultural reproduction +
generic  +
Human neoteny revisited: The case of synaptic plasticity +
generic  +
C
Consensus paper: The cerebellum's role in movement and cognition +
generic  +
Component-placement optimization in the brain +
generic  +
S
Summing up the noise in gene networks +
generic  +
B
Bacterial chemoreceptors: high-performance signaling in networked arrays +
generic  +
W
Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity +
generic  +
E
Energy flows in low-entropy complex systems +
generic  +
T
The energy expansions of evolution +
generic  +
L
Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations +
generic  +
U
Ultimate physical limits to computation +
generic  +
S
Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics +
generic  +
F
Facilitated target location in biological systems +
generic  +
M
Microbial life under extreme energy limitation +
generic  +
C
Calcium, the two-faced messenger of olfactory transduction and adaptation +
generic  +
R
Readers of histone modifications +
generic  +
T
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium +
generic  +
N
Nucleosome positioning and gene regulation: Advances through genomics +
generic  +
T
The second wave of synthetic biology: From modules to systems +
generic  +
O
Operating on chromatin, a colorful language where context matters +
generic  +
T
Thermodynamics of computational copying in biochemical systems +
generic  +
The WUS homeobox-containing (WOX) protein family +
generic  +
R
Resurrecting ancient genes: Experimental analysis of extinct molecules +
generic  +
H
Histone acetylation as an epigenetic determinant of long-term transcriptional competence +
generic  +
C
Combinatorial readout of dual histone modifications by paired chromatin-associated modules +
generic  +
Combinatorial complexity in chromatin structure and function: Revisiting the histone code +
generic  +
M
Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information +
generic  +
P
Performance assessment of multiobjective optimizers: An analysis and review +
generic  +
F
Fast signals and slow marks: the dynamics of histone modifications +
generic  +
P
Pushing the limits of lithography +
generic  +
Perceiving the epigenetic landscape through histone readers +
generic  +
D
Directing reprogramming to pluripotency by transcription factors +
generic  +
C
Covalent modifications of histones during mitosis and meiosis +
generic  +
T
The adjustable nucleosome: An epigenetic signaling module +
generic  +
The chromatin code of fungal secondary metabolite gene clusters +
generic  +
The quiet revolution of numerical weather prediction +
generic  +
S
Statistical mechanics of Monod-Wyman-Changeux (MWC) models +
generic  +
D
Digital genetics: Unravelling the genetic basis of evolution +
generic  +
T
Translating the histone code +
generic  +
N
Network and thermodynamic conditions for a single macroscopic current fluctuation theorem +
generic  +
G
Genetic networks: Small numbers of big molecules +
generic  +
E
Evolution of the brain and intelligence +
generic  +
H
Human brain networks in health and disease +
generic  +
S
Small-world brain networks +
generic  +
T
The structure and function of the homeodomain +
generic  +
F
Fifty years of the VSEPR model +
generic  +
T
The neural code of the retina +
generic  +
The olfactory bulb: Coding and processing of odor molecule information +
generic  +
The fundamental plan of the retina +
generic  +
Q
Quantum mechanics: No more fields +
generic  +
D
Dissipation and noise immunity in computation and communication +
generic  +
M
Macromolecular crowding: An important but neglected aspect of the intracellular environment +
generic  +
F
Fundamental aspects of protein - Protein association kinetics +
generic  +
M
Maxwell's demon and quantum-dot cellular automata +
generic  +
S
Split decision: What happens to nucleosomes during DNA replication? +
generic  +
L
Laser cooling of atoms +
journal  +
R
Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru +
journal  +
S
Stochastic thermodynamics, fluctuation theorems and molecular machines +
journal  +
E
Equilibrium microstates which generate second law violating steady states +
journal  +
T
The mesoscopic dynamics of thermodynamic systems +
journal  +
N
Non-equilibrium work relations +
journal  +
P
Probability of second law violations in shearing steady states +
journal  +
M
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation +
journal  +
P
Path-ensemble averages in systems driven far from equilibrium +
journal  +
I
Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence +
journal  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
journal  +
E
Entropy production along a stochastic trajectory and an integral fluctuation theorem +
journal  +
D
Dynamical ensembles in nonequilibrium statistical mechanics +
journal  +
E
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach +
journal  +
P
Path integrals with generalized Grassmann variables +
journal  +
S
Steady-state thermodynamics of Langevin systems +
journal  +
E
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences +
journal  +
N
Nonequilibrium equality for free energy differences +
journal  +
S
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis +
journal  +
E
Energy Aware Computing Through Probabilistic Switching: A Study of Limits +
journal  +
T
The Use of Information Theory in Evolutionary Biology +
journal  +
Thermodynamics of natural selection III: Landauer’s principle in computation and chemistry +
journal  +
Thermodynamics of natural selection I: Energy flow and the limits on organization +
journal  +
The energy–speed–accuracy trade-off in sensory adaptation +
journal  +
H
Heterogeneity and Efficiency in the Brain +
journal  +
D
Deterministic Function Computation with Chemical Reaction Network +
journal  +
C
Chemical Reaction Networks for Computing Polynomials +
journal  +
A
Analog Computation by DNA Strand Displacement Circuits +
journal  +
S
Statistical properties of entropy production derived from fluctuation theorems +
journal  +
M
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models +
journal  +
F
Failure of the work-hamiltonian connection for free-energy calculations +
journal  +
S
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis +
journal  +
W
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving +
journal  +
S
Steady state thermodynamics +
journal  +
G
Generalised Einstein relation for hot Brownian motion +
journal  +
N
Nonequilibrium work theorem for a system strongly coupled to a thermal environment +
journal  +
E
Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states +
journal  +
T
Thermodynamic cost of measurements +
journal  +
I
Irreversibility-to-reversibility crossover in transient response of an optically trapped particle +
journal  +
F
Fluctuation relations for a driven Brownian particle +
journal  +
R
Resonances arising from hydrodynamic memory in Brownian motion +
journal  +
B
Bidirectional single-electron counting and the fluctuation theorem +
journal  +
F
Fluctuations of internal energy flow in a vibrated granular gas +
journal  +
W
Work fluctuations in a nematic liquid crystal +
journal  +
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