Santa Fe Institute Collaboration Platform

Thermodynamics of Computation

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U
Ueber die bewegende Kraft der Wärme und die Gesetze, welche sich daraus für die Wärmelehre selbst ableiten lassen +
1850  +
Ueber die mechanischen Analogien des zweiten Hauptsatzes der Thermodynamik +
1887  +
Z
Zur Quantentheorie der Molekeln +
1927  +
U
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen +
1929  +
A
A new notation for quantum mechanics +
1939  +
F
Fluctuations and irreversible processes +
1953  +
S
Some informational aspects of visual perception +
1954  +
M
Multivariate information transmission +
1954  +
H
High-energy behavior in quantum field theory +
1960  +
E
Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes +
1960  +
I
Irreversibility and Heat Generation in the Computing Process +
1961  +
C
Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life. +
1963  +
B
Broken symmetries and the masses of gauge bosons +
1964  +
I
Insect olfactory receptors. +
1965  +
O
On the nature of allosteric transitions: A plausible model +
1965  +
Q
Quantum equivalent of the Carnot cycle +
1967  +
A
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions +
1967  +
R
Random-Pulse Machines +
1967  +
C
Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. +
1969  +
L
Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow. +
1970  +
O
On r- and K-Selection +
1970  +
C
Curie's principle +
1970  +
P
Physiological evidence for dendrodendritic synaptic interactions in the rabbit's olfactory glomerulus +
1971  +
S
Selforganization of matter and the evolution of biological macromolecules +
1971  +
N
Necessary and sufficient conditions for complex balancing in chemical kinetics +
1972  +
C
Chemotaxis in Escherichia coli analysed by three-dimensional tracking +
1972  +
T
The relationship between stochastic and deterministic models for chemical reactions +
1972  +
G
General mass action kinetics +
1972  +
O
On the Complexity of a Concentrator +
1973  +
U
Universal sequential search problems +
1973  +
E
Efficiency of a Carnot engine at maximum power output +
1975  +
T
The Effect of Phenobarbitone Anaesthesia on Blood Flow and Oxygen Consumption in the Rat Brain +
1975  +
L
Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulation +
1975  +
A
A master equation description of local fluctuations +
1975  +
K
Kinetic amplification of enzyme discrimination +
1975  +
N
Network theory of microscopic and macroscopic behavior of master equation systems +
1976  +
T
Topology of cosmic domains and strings +
1976  +
C
Clinical longitudinal standards for height, weight, height velocity, weight velocity, and stages of puberty +
1976  +
S
Statistical Processors +
1976  +
A
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions +
1976  +
G
General theory of thermal fluctuations in nonlinear systems +
1977  +
P
Path integral formulation of general diffusion processes +
1977  +
M
Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose +
1977  +
R
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM +
1977  +
P
Physics of chemoreception +
1977  +
C
Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights +
1978  +
Convergence in the olfactory system: quantitative aspects of odour sensitivity +
1978  +
O
Optimum walking techniques for idealized animals +
1978  +
A
A note on monte carlo primality tests and algorithmic information theory +
1978  +
T
The quantum open system as a model of the heat engine +
1979  +
F
Functional organization of rat olfactory bulb analysed by the 2‐deoxyglucose method +
1979  +
E
Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation +
1979  +
D
Dissipation-error tradeoff in proofreading +
1979  +
P
Probabilistic algorithms for verification of polynomial identities +
1979  +
F
Factoring numbers in O(logn) arithmetic steps +
1979  +
L
Laser cooling of atoms +
1979  +
T
Thermodynamic constraints on kinetic proofreading in biosynthetic pathways +
1980  +
The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machines +
1980  +
P
Probabilistic algorithm for testing primality +
1980  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
1981  +
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem +
1981  +
I
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine +
1981  +
B
Basal Metabolic Rate in Man +
1981  +
A
A simple coding procedure enhances a neuron’s information capacity +
1981  +
O
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information +
1981  +
On the generation of cryptographically strong pseudo-random sequences +
1981  +
T
The thermodynamics of computation-a review +
1982  +
C
Conservative logic +
1982  +
Classical and quantum limitations on energy consumption in computation +
1982  +
S
Sparse complete sets for NP: Solution of a conjecture of Berman and Hartmanis +
1982  +
B
BPP and the polynomial hierarchy +
1983  +
A
A new polynomial-time algorithm for linear programming +
1984  +
T
The complexity of facets (and some facets of complexity) +
1984  +
C
Cosmological experiments in superfluid helium? +
1985  +
H
Histone Segregation on Replicating Chromatin†+
1985  +
T
The topology of energy hypersurfaces III. The fundamental group of reaction mechanisms on potential energy hypersurfaces +
1985  +
The intractability of resolution +
1985  +
G
Games against nature +
1985  +
L
Lower bounds on probabilistic linear decision trees +
1985  +
H
Histone Segregation on Replicating Chromatin† +
1985  +
I
Incremental growth tables: Supplementary to previously published charts +
1986  +
Q
Quantum mechanical computers +
1986  +
E
Expanders, randomness, or time versus space: Extended abstract +
1986  +
A
Are Recursion Theoretic Arguments Useful in Complexity Theory? +
1986  +
T
Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injection +
1987  +
A
A quantitative analysis of sniffing strategies in rats performing odor detection tasks +
1987  +
M
Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate +
1987  +
O
One way functions and pseudorandom generators +
1987  +
M
Matching is as easy as matrix inversion +
1987  +
L
Lower bounds on the size of bounded depth circuits over a complete basis with logical addition +
1987  +
M
Motion out of noisy states +
1988  +
N
Number of parallel fiber synapses on an individual Purkinje cell in the cerebellum of the rat +
1988  +
D
Dissipation and noise immunity in computation and communication +
1988  +
B
Binary Multiplication with PN Sequences +
1988  +
S
Self-Organization in a Perceptual Network +
1988  +
R
Ramanujan graphs +
1988  +
U
Use of mutual information to decrease entropy: Implications for the second law of thermodynamics +
1989  +
F
Facilitated target location in biological systems +
1989  +
A
Algorithmic randomness and physical entropy +
1989  +
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation +
1989  +
T
The structure and function of the homeodomain +
1989  +
A
Approximate counting, uniform generation and rapidly mixing Markov chains +
1989  +
R
Rethinking mammalian brain evolution +
1990  +
T
Theory of reversible diffusion-influenced reactions +
1990  +
A
An informational process based on reversible universal cellular automata +
1990  +
I
Invertible cellular automata: A review +
1990  +
P
Principles of Population Genetics. +
1990  +
Precis of The Emperor's New Mind +
1990  +
E
Efficient checking of computations +
1990  +
M
Monotone Circuits for Connectivity Require Super-Logarithmic Depth +
1990  +
S
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis +
1991  +
D
Distributed hierarchical processing in the primate cerebral cortex +
1991  +
O
Of dreaming and wakefulness +
1991  +
C
Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid +
1991  +
U
Using profile information to assist classic code optimizations +
1991  +
O
Optimization, approximation, and complexity classes +
1991  +
N
Nutritional requirements and human evolution: A bioenergetics model +
1992  +
T
Theoretical predictions of spatiotemporal receptive fields of fly LMCs, and experimental validation +
1992  +
W
What Does the Retina Know about Natural Scenes? +
1992  +
A
A rigorous derivation of the chemical master equation +
1992  +
P
Pseudorandom generators for space-bounded computation +
1992  +
Probability of second law violations in shearing steady states +
1993  +
W
Why do female primates have such long lifespans and so few babies? or Life in the slow lane +
1993  +
F
Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera +
1993  +
S
Stochastic arithmetic implementations of neural networks with in situ learning +
1993  +
D
Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex +
1993  +
R
Reversible electronic logic using switches +
1993  +
E
Equilibrium microstates which generate second law violating steady states +
1994  +
M
Molecular combustion motors +
1994  +
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye +
1994  +
N
Nitric oxide and adenosine mediate vasodilation during functional activation in cerebellar cortex +
1994  +
A
Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study +
1994  +
O
On the complexity of the parity argument and other inefficient proofs of existence +
1994  +
L
Low-Power Digital Systems Based on Adiabatic-Switching Principles +
1994  +
O
On boolean decision trees with faulty nodes +
1994  +
R
RNA sequence analysis using covariance models +
1994  +
I
Imprecise Computations +
1994  +
G
Generating Binary Sequences for Stochastic Computing +
1994  +
Genetic programming as a means for programming computers by natural selection +
1994  +
T
The superfamily of heme-copper respiratory oxidases +
1994  +
A
Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic +
1994  +
H
Hardness vs randomness +
1994  +
O
On the degree of boolean functions as real polynomials +
1994  +
D
Dynamical ensembles in nonequilibrium statistical mechanics +
1995  +
P
Path integrals with generalized Grassmann variables +
1995  +
E
Evaluating sums over the Matsubara frequencies +
1995  +
T
The Expensive-Tissue Hypothesis: The Brain and the Digestive System in Human and Primate Evolution +
1995  +
H
Heat generation required by information erasure +
1995  +
T
The computationally complete ant colony: Global coordination in a system with no hierarchy +
1995  +
L
Low Power Microelectronics: Retrospect and Prospect +
1995  +
A
Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network +
1995  +
G
Genetic Algorithms, Tournament Selection, and the Effects of Noise +
1995  +
C
Covariation of residues in the homeodomain sequence family +
1995  +
D
Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? +
1995  +
O
On rank vs. communication complexity +
1995  +
C
Criticism of Feynman’s analysis of the ratchet as an engine +
1996  +
L
Localization transitions in non-hermitian quantum mechanics +
1996  +
T
Targeting olfaction +
1996  +
R
Response and habituation of the human amygdala during visual processing of facial expression +
1996  +
C
Component-placement optimization in the brain +
1996  +
M
Minimal energy requirements in communication +
1996  +
T
The physical nature of information +
1996  +
Y
Yeast HOG1 MAP kinase cascade is regulated by a multistep phosphorelay mechanism in the SLN1-YPD1-SSK1 'two-component' osmosensor +
1996  +
H
Helical logic +
1996  +
F
Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees +
1996  +
T
Towards the parallel repetition conjecture +
1996  +
E
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach +
1997  +
N
Nonequilibrium equality for free energy differences +
1997  +
F
Fluctuation-dissipation theorems and entropy production in relaxational systems +
1997  +
E
Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics +
1997  +
F
Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells +
1997  +
S
Sparse coding with an overcomplete basis set: A strategy employed by V1? +
1997  +
A
A tension-based theory of morphogenesis and compact wiring in the central nervous system +
1997  +
T
The 'independent components' of natural scenes are edge filters +
1997  +
D
Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil +
1997  +
Determining cortical landscapes +
1997  +
A
A general framework for non-equilibrium phenomena: The master equation and its formal consequences +
1997  +
R
Robustness in simple biochemical networks +
1997  +
C
Chemical kinetics is turing universal +
1997  +
S
Soft computing: the convergence of emerging reasoning technologies +
1997  +
L
Lower bounds for resolution and cutting plane proofs and monotone computations +
1997  +
N
Natural Proofs +
1997  +
L
Large Deviation Bounds for Markov Chains +
1997  +
R
Real spectra in non-hermitian hamiltonians having PT symmetry +
1998  +
T
Thermodynamics and an Introduction to Thermostatistics, 2nd ed. +
1998  +
A
Adipose tissue in human infancy and childhood: An evolutionary perspective +
1998  +
C
Collective dynamics of 'small-world' networks +
1998  +
P
Postnatal development of olfactory receptor cell axonal arbors +
1998  +
N
Neurochemical organization of the macaque striate cortex: Correlation of cytochrome oxidase with Na+K+ATPase, NADPH-diaphorase, nitric oxide synthase, and N-methyl-D-aspartate receptor subunit 1 +
1998  +
M
Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex +
1998  +
N
Neurochemical organization of the macaque retina: Effect of TTX on levels and gene expression of cytochrome oxidase and nitric oxide synthase and on the immunoreactivity of Na+ K+ ATPase and NMDA receptor subunit I +
1998  +
S
Single-photon detection by rod cells of the retina +
1998  +
H
Histone acetylation as an epigenetic determinant of long-term transcriptional competence +
1998  +
Y
Yeast heterochromatin: Regulation of its assembly and inheritance by histones +
1998  +
E
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences +
1999  +
F
Finite time thermodynamic optimization or entropy generation minimization of energy systems +
1999  +
E
Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium +
1999  +
C
Compartmental organization of the olfactory bulb glomerulus +
1999  +
Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation +
1999  +
T
The olfactory bulb: Coding and processing of odor molecule information +
1999  +
E
Energetics of functional activation in neural tissues +
1999  +
T
The connectional organization of the cortico-thalamic system of the cat +
1999  +
D
Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats +
1999  +
A
A systems perspective on early olfactory coding +
1999  +
T
The neural code of the retina +
1999  +
E
Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond +
1999  +
R
Robustness in bacterial chemotaxis +
1999  +
P
Phosphorylation and regulation of Raf by Akt (protein kinase B) +
1999  +
A
A general model for the structure and allometry of plant vascular systems +
1999  +
C
Calcium signalling and regulation in olfactory neurons +
1999  +
A
Article for analog vector algebra computation +
1999  +
I
Improved decoding of reed-solomon and algebraic-geometry codes +
1999  +
P
Path-ensemble averages in systems driven far from equilibrium +
2000  +
U
Universal aspects of the chemomechanical coupling for molecular motors +
2000  +
A
A simple theory of motor protein kinetics and energetics. II +
2000  +
S
Stochastic energetics of non-uniform temperature systems +
2000  +
P
Pumped biochemical reactions, nonequilibrium circulation, and stochastic resonance +
2000  +
U
Unattainability of Carnot efficiency in the Brownian heat engine +
2000  +
S
Sparse coding and decorrelation in primary visual cortex during natural vision +
2000  +
P
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system +
2000  +
C
Channel noise in neurons +
2000  +
CNS energy metabolism as related to function +
2000  +
B
Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) +
2000  +
E
Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina +
2000  +
U
Ultimate physical limits to computation +
2000  +
C
Compiler optimization on instruction scheduling for low power +
2000  +
E
Earth mover's distance as a metric for image retrieval +
2000  +
P
Pushing the limits of lithography +
2000  +
A
A DNA-fuelled molecular machine made of DNA +
2000  +
R
Reversible space equals deterministic space +
2000  +
S
Structure and function of a human TAF(II)250 double bromodomain module +
2000  +
A
A synthetic oscillatory network of transcriptional regulators +
2000  +
S
Sampling adsorbing staircase walks using a new Markov chain decomposition method +
2000  +
Steady-state thermodynamics of Langevin systems +
2001  +
E
Energy as a constraint on the coding and processing of sensory information +
2001  +
S
Study of stochastic resonance by method of stochastic energetics +
2001  +
F
Fluctuation and dissipation in liquid-crystal electroconvection +
2001  +
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes +
2001  +
G
Giant acceleration of free diffusion by use of tilted periodic potentials +
2001  +
P
Principles of control thermodynamics +
2001  +
T
The physics of molecular motors +
2001  +
F
Fast-growth thermodynamic integration: Error and efficiency analysis +
2001  +
N
Nonequilibrium steady-state circulation and heat dissipation functional +
2001  +
A
Active membrane fluctuations studied by micropipet aspiration +
2001  +
G
Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins +
2001  +
T
Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework +
2001  +
N
Neurophysiological investigation of the basis of the fMRI signal +
2001  +
P
Probabilistic mapping and volume measurement of human primary auditory cortex +
2001  +
R
Response correlation maps of neurons in the mammalian olfactory bulb +
2001  +
P
Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specific +
2001  +
R
Representation of odorants by receptor neuron input to the mouse olfactory bulb +
2001  +
Relationship between subsistence and age at weaning in "preindustrial" societies +
2001  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
2001  +
Efficient behavior of small-world networks +
2001  +
P
Principles underlying mammalian neocortical scaling +
2001  +
T
The fundamental plan of the retina +
2001  +
R
Relative entropy: Free energy associated with equilibrium fluctuations and nonequilibrium deviations +
2001  +
T
The physics of forgetting: Landauer's erasure principle and information theory +
2001  +
The Szilard engine revisited: Entropy, macroscopic randomness, and symmetry breaking phase transitions +
2001  +
A
A general model for ontogenetic growth +
2001  +
S
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction +
2001  +
M
Mammalian MAP kinase signalling cascades +
2001  +
Macromolecular crowding: An important but neglected aspect of the intracellular environment +
2001  +
C
Conformational spread in a ring of proteins: A stochastic approach to allostery +
2001  +
T
Three-dimensional simulations of reversible bimolecular reactions: The simple target problem +
2001  +
I
Introduction to Automata Theory, Languages, and Computation +
2001  +
T
Time and space bounds for reversible simulation +
2001  +
P
Programmable and autonomous computing machine made of biomolecules +
2001  +
Parallel simulation of compressible flow using automatic differentiation and PETSc +
2001  +
M
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins +
2001  +
E
Experimental demonstration of a latch in clocked quantum-dot cellular automata +
2001  +
F
Factor graphs and the sum-product algorithm +
2001  +
S
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain +
2001  +
Stochastic neural computation I: Computational elements +
2001  +
T
Translating the histone code +
2001  +
L
Lower bounds for polynomial calculus: Non-binomial case +
2001  +
E
Easiness Assumptions and Hardness Tests: Trading Time for Zero Error +
2001  +
M
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation +
2002  +
E
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality +
2002  +
O
Observable dependence of fluctuation-dissipation relations and effective temperatures +
2002  +
B
Brownian motors: Noisy transport far from equilibrium +
2002  +
A
An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation +
2002  +
R
Reversible Quantum Brownian Heat Engines for Electrons +
2002  +
T
The Stokes efficiency for molecular motors and its applications +
2002  +
Theory of a Systematic Computational Error in Free Energy Differences +
2002  +
A
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium +
2002  +
M
Motor-Driven Dynamics in Actin-Myosin Networks +
2002  +
I
Injected power fluctuations in Langevin equation +
2002  +
C
Complex Extension of Quantum Mechanics +
2002  +
M
Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation +
2002  +
A
A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy +
2002  +
T
The neural basis of functional brain imaging signals +
2002  +
O
Olfactory network dynamics and the coding of multidimensional signals +
2002  +
A
A test of metabolically efficient coding in the retina +
2002  +
O
On the origin of modular variation +
2002  +
T
The conscious access hypothesis: Origins and recent evidence +
2002  +
K
Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation +
2002  +
E
End of Moore's law: Thermal (noise) death of integration in micro and nano electronics +
2002  +
A
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling +
2002  +
A fast and elitist multiobjective genetic algorithm: NSGA-II +
2002  +
C
Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing +
2002  +
S
Solution of a 20-variable 3-SAT problem on a DNA computer +
2002  +
T
The Taxonomy Project +
2002  +
G
Genetic networks: Small numbers of big molecules +
2002  +
E
Extension of the fluctuation theorem +
2003  +
O
Optimal Process Paths for Endoreversible Systems +
2003  +
V
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence +
2003  +
M
Measuring the fluctuation-dissipation ratio in glassy systems with no perturbing field +
2003  +
S
Stationary and transient work-fluctuation theorems for a dragged Brownian particle +
2003  +
D
Decoherence, einselection, and the quantum origins of the classical +
2003  +
E
Extracting work from a single heat bath via vanishing quantum coherence +
2003  +
Q
Quantum Extension of the Jarzynski Relation: Analogy with Stochastic Dephasing +
2003  +
E
Environment-Assisted Invariance, Entanglement, and Probabilities in Quantum Physics +
2003  +
T
The cost of cortical computation +
2003  +
C
Communication in neuronal networks +
2003  +
M
Measuring information integration +
2003  +
A
Alternative splicing in the nervous system: An emerging source of diversity and regulation +
2003  +
M
Metabolic correlates of hominid brain evolution +
2003  +
S
Speed and accuracy of olfactory discrimination in the rat +
2003  +
Spontaneously emerging cortical representations of visual attributes +
2003  +
D
Dietary constraints on encephalization in primates +
2003  +
T
The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses +
2003  +
D
Dynamics of market correlations: Taxonomy and portfolio analysis +
2003  +
T
The scaling of white matter to gray matter in cerebellum and neocortex +
2003  +
Q
Quantum discord and Maxwell’s demons +
2003  +
N
Notes on Landauer's principle, reversible computation, and Maxwell's Demon +
2003  +
S
Stoichiometric network theory for nonequilibrium biochemical systems +
2003  +
C
Chemical reaction network theory for in-silico biologists +
2003  +
B
Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors +
2003  +
P
Perfect and near-perfect adaptation in a model of bacterial chemotaxis +
2003  +
T
Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction +
2003  +
C
Calcium, the two-faced messenger of olfactory transduction and adaptation +
2003  +
M
Maxwell's demon and quantum-dot cellular automata +
2003  +
P
Performance assessment of multiobjective optimizers: An analysis and review +
2003  +
I
Instrumentation applications of multibit random-data representation +
2003  +
T
The evolutionary origin of complex features +
2003  +
R
Resolution lower bounds for the weak functional pigeonhole principle +
2003  +
P
Pseudo-random generators for all hardnesses +
2003  +
Q
Quantum entropy production as a measure of irreversibility +
2004  +
N
Nonequilibrium work theorem for a system strongly coupled to a thermal environment +
2004  +
P
Probing molecular free energy landscapes by periodic loading +
2004  +
Power fluctuations in stochastic models of dissipative systems +
2004  +
E
Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows +
2004  +
D
Distribution of work in isothermal nonequilibrium processes +
2004  +
S
Single-ensemble nonequilibrium path-sampling estimates of free energy differences +
2004  +
F
Fluctuation theorem for birth-death or chemical master equations with time-dependent rates +
2004  +
I
Information-theoretic approach to the study of control systems +
2004  +
F
Fluidized granular medium as an instance of the fluctuation theorem +
2004  +
Fluctuation theorem for nonequilibrium reactions +
2004  +
E
Entropy fluctuations in shell models of turbulence +
2004  +
F
Free energy transduction in a chemical motor model +
2004  +
C
Current, maximum power and optimized efficiency of a Brownian heat engine +
2004  +
F
Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap +
2004  +
E
Exactly solvable model for driven dissipative systems +
2004  +
O
On universality in ageing ferromagnets +
2004  +
E
Effective temperatures in driven systems: Static versus time-dependent relations +
2004  +
F
Feedback control in a collective flashing ratchet +
2004  +
E
Extended heat-fluctuation theorems for a system with deterministic and stochastic forces +
2004  +
C
Classical and quantum fluctuation theorems for heat exchange +
2004  +
A
A Map of the Interactome Network of the Metazoan C. elegans +
2004  +
M
Modelling the development of cortical systems networks +
2004  +
S
Superfamilies of Evolved and Designed Networks +
2004  +
O
Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell +
2004  +
I
Integration of quanta in cerebellar granule cells during sensory processing +
2004  +
B
Brain growth, life history, and cognition in primate and human evolution +
2004  +
M
Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice +
2004  +
S
Synaptic connectivity and neuronal morphology: Two sides of the same coin +
2004  +
N
Networks, dynamics, and modularity +
2004  +
O
Organization, development and function of complex brain networks +
2004  +
F
Flaked stones and old bones: Biological and cultural evolution at the dawn of technology +
2004  +
O
Olfactory Bulb +
2004  +
S
Small modulation of ongoing cortical dynamics by sensory input during natural vision +
2004  +
B
Bayesian integration in sensorimotor learning +
2004  +
E
Energetic basis of brain activity: Implications for neuroimaging +
2004  +
R
Retina +
2004  +
S
Summing up the noise in gene networks +
2004  +
T
Transitions from Nonliving to Living Matter +
2004  +
C
Cellular stoichiometry of the components of the chemotaxis signaling complex +
2004  +
T
Thermodynamic constraints for biochemical networks +
2004  +
R
Resurrecting ancient genes: Experimental analysis of extinct molecules +
2004  +
D
Defect and error tolerance in the presence of massive numbers of defects +
2004  +
S
Speeding up processing with approximation circuits +
2004  +
D
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 +
2004  +
A
An information integration theory of consciousness +
2004  +
S
Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9 +
2004  +
I
Information theory in molecular biology +
2004  +
Image quality assessment: From error visibility to structural similarity +
2004  +
B
Building programmable jigsaw puzzles with RNA +
2004  +
G
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation +
2004  +
T
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice +
2004  +
A
A (sub)graph isomorphism algorithm for matching large graphs +
2004  +
D
Derandomizing polynomial identity tests means proving circuit lower bounds +
2004  +
T
Tight estimates for eigenvalues of regular graphs +
2004  +
The mesoscopic dynamics of thermodynamic systems +
2005  +
E
Entropy production along a stochastic trajectory and an integral fluctuation theorem +
2005  +
B
Brownian motion: A paradigm of soft matter and biological physics +
2005  +
E
Energy Aware Computing Through Probabilistic Switching: A Study of Limits +
2005  +
Elements of Information Theory +
2005  +
F
Fluctuations of internal energy flow in a vibrated granular gas +
2005  +
Fluctuation theorem for a single enzym or molecular motor +
2005  +
E
Experimental study of the fluctuation theorem in a nonequilibrium steady state +
2005  +
V
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies +
2005  +
D
Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers +
2005  +
I
Integral fluctuation theorem for the housekeeping heat +
2005  +
C
Closed-loop control strategy with improved current for a flashing ratchet +
2005  +
A
A fluctuation theorem for non-equilibrium relaxational systems driven by external forces +
2005  +
N
Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces +
2005  +
T
Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection +
2005  +
A
An experimental test of the Jarzynski equality in a mechanical experiment +
2005  +
O
Off-equilibrium generalization of the fluctuation dissipation theorem for Ising spins and measurement of the linear response function +
2005  +
I
Injected power and entropy flow in a heated granular gas +
2005  +
C
Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms +
2005  +
E
Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates +
2005  +
R
Reversible thermoelectric nanomaterials +
2005  +
F
Fluctuation-dissipation relations for Markov processes +
2005  +
N
Nonequilibrium fluctuations in a resistor +
2005  +
W
Work distribution functions for hysteresis loops in a single-spin system +
2005  +
E
Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models +
2005  +
L
Lag inequality for birth-death processes with time-dependent rates +
2005  +
E
Enstrophy dissipation in two-dimensional turbulence +
2005  +
B
Bona fide stochastic resonance: A view point from stochastic energetics +
2005  +
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? +
2005  +
P
Probabilities from entanglement, Born's rule pk=ψk2 from envariance +
2005  +
U
Unified treatment of the quantum fluctuation theorem and the Jarzynski equality in terms of microscopic reversibility +
2005  +
M
Microstructure of a spatial map in the entorhinal cortex +
2005  +
N
Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations +
2005  +
O
Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neurons +
2005  +
T
The effects of spatial constraints on the evolution of weighted complex networks +
2005  +
I
Interpreting hippocampal function as recoding and forecasting +
2005  +
Intraglomerular inhibition: Signaling mechanisms of an olfactory microcircuit +
2005  +
Invariant visual representation by single neurons in the human brain +
2005  +
T
The human connectome: A structural description of the human brain +
2005  +
E
Evolution of the brain and intelligence +
2005  +
N
Neuroenergetics and the kinetic design of excitatory synapses +
2005  +
Neurophysiological architecture of functional magnetic resonance images of human brain +
2005  +
I
Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks +
2005  +
O
Optimality and evolutionary tuning of the expression level of a protein +
2005  +
N
Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch +
2005  +
S
Self-regulating gene: An exact solution +
2005  +
O
One-component systems dominate signal transduction in prokaryotes +
2005  +
T
The (absence of a) relationship between thermodynamic and logical reversibility +
2005  +
D
Design principles of a bacterial signalling network +
2005  +
T
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium +
2005  +
H
Heterochromatin formation involves changes in histone modifications over multiple cell generations +
2005  +
E
Energy aware computing through probabilistic switching: A study of limits +
2005  +
S
Split decision: What happens to nucleosomes during DNA replication? +
2005  +
J
Jarzynski equality for the Jepsen gas +
2005  +
M
Methods for quantifying the informational structure of sensory and motor data +
2005  +
S
Stretching the limits of clock-gating efficiency in server-class processors +
2005  +
F
Fuzzy Memoization for Floating-Point Multimedia Applications +
2005  +
P
Programmable ligand-controlled riboregulators of eukaryotic gene expression +
2005  +
U
Using information theory to search for co-evolving residues in proteins +
2005  +
C
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes +
2005  +
T
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1 +
2005  +
C
Correcting errors beyond the Guruswami-Sudan radius in polynomial time +
2005  +
O
Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations +
2006  +
S
Steady state thermodynamics +
2006  +
F
Fluctuation relations for a driven Brownian particle +
2006  +
R
Rare events and the convergence of exponentially averaged work values +
2006  +
W
Work fluctuations for a Brownian particle between two thermostats +
2006  +
P
Path-integral analysis of fluctuation theorems for general Langevin processes +
2006  +
R
Relevance of initial and final conditions for the fluctuation relation in Markov processes +
2006  +
D
Dynamics of a tracer granular particle as a nonequilibrium Markov process +
2006  +
F
Fluctuation symmetries for work and heat +
2006  +
E
Efficiency and fluctuation in tight-coupling model of molecular motor +
2006  +
F
Fluctuation-dissipation relations in driven dissipative systems +
2006  +
E
Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems +
2006  +
O
Optimal estimates of free energies from multistate nonequilibrium work data +
2006  +
F
Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality +
2006  +
Fluctuation theorem for transport in mesoscopic systems +
2006  +
A
A possible classification of nonequilibrium steady states +
2006  +
C
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality +
2006  +
W
Work fluctuation theorems for harmonic oscillators +
2006  +
M
Making molecular machines work +
2006  +
F
Free-energy reconstruction from experiments performed under different biasing programs +
2006  +
T
Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state +
2006  +
Thermophoretic depletion follows boltzmann distribution +
2006  +
M
Measurement of stochastic entropy production +
2006  +
T
Tight coupling in thermal Brownian motors +
2006  +
F
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors +
2006  +
T
Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential +
2006  +
G
Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes +
2006  +
F
Fluctuation theorems for quantum master equations +
2006  +
C
Combined analog and action potential coding in hippocampal mossy fibers +
2006  +
M
Molecular taxonomy of major neuronal classes in the adult mouse forebrain +
2006  +
W
Wiring cost in the organization of a biological neuronal network +
2006  +
S
Small-world brain networks +
2006  +
G
Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity +
2006  +
T
The sniff as a unit of olfactory processing +
2006  +
C
Complex parameter landscape for a complex neuron model +
2006  +
S
Sensory-Evoked Intrinsic Optical Signals in the Olfactory Bulb Are Coupled to Glutamate Release and Uptake +
2006  +
N
Near-optimal signal recovery from random projections: Universal encoding strategies? +
2006  +
C
Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury +
2006  +
S
Size at birth, postnatal growth and risk of obesity +
2006  +
Sniffing and spatiotemporal coding in olfaction +
2006  +
N
Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systems +
2006  +
C
Costs of encephalization: the energy trade-off hypothesis tested on birds +
2006  +
L
Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans +
2006  +
V
Variable channel expression in identified single and electrically coupled neurons in different animals +
2006  +
H
How Much the Eye Tells the Brain +
2006  +
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