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- David Doty
- David Krakauer
- David Sivak
- David Wolpert
- Decoherence, einselection, and the quantum origins of the classical
- Defect and error tolerance in the presence of massive numbers of defects
- Defining Network Topologies that Can Achieve Biochemical Adaptation
- Defining genes: A computational framework
- Delayed stochastic decoding of LDPC codes
- Demons, Engines and the Second Law
- Dendrosomatic voltage and charge transfer in rat neocortical pyramidal cells
- Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism
- Dental and skeletal growth in early fossil hominins
- Dental evidence for ontogenetic differences between modern humans and Neanderthals
- Deoxyribozymes that recode sequence information
- Dependence of the fluctuation-Dissipation temperature on the choice of observable
- Derandomizing polynomial identity tests means proving circuit lower bounds
- Derivation of quantum master equation with counting fields by monitoring a probe
- Design and analysis of synthetic carbon fixation pathways.
- Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements
- Design of a Neuronal Array
- Design of a trichromatic cone array
- Design principles of a bacterial signalling network
- Designing logic circuits for probabilistic computation in the presence of noise
- Designing optimal discrete-feedback thermodynamic engines
- Detecting Activity in Olfactory Bulb Glomeruli with Astrocyte Recording
- Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex
- Determining cortical landscapes
- Deterministic Function Computation with Chemical Reaction Network
- Deterministic function computation with chemical reaction networks
- Development of Gap Junctions in Hippocampal Astrocytes: Evidence That Whole Cell Electrophysiological Phenotype Is an Intrinsic Property of the Individual Cell
- Development of large-scale functional brain networks in children
- Dietary constraints on encephalization in primates
- Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis
- Differential Landauer's principle
- Diffusion Tensor Tractography Reveals Abnormal Topological Organization in Structural Cortical Networks in Alzheimer's Disease
- Diffusion of transcription factors can drastically enhance the noise in gene expression
- Digital and analog gene circuits for biotechnology
- Digital genetics: Unravelling the genetic basis of evolution
- Digitalized Signatures and Public-Key Functions as Intractable as Factorization
- Directing reprogramming to pluripotency by transcription factors
- Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome
- Discriminatory proofreading regimes in nonequilibrium systems
- Discussion Forum/Losses In Ventilation
- Disjointness is hard in the multiparty number-on-the-forehead model
- Disrupted Modularity and Local Connectivity of Brain Functional Networks in Childhood-Onset Schizophrenia
- Disrupted axonal fiber connectivity in schizophrenia
- Disrupted small-world networks in schizophrenia
- Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers
- Dissipation-error tradeoff in proofreading
- Dissipation Bound for Thermodynamic Control
- Dissipation and lag in irreversible processes
- Dissipation and noise immunity in computation and communication
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
- Distinctive features of dinoflagellate chromatin. Absence of nucleosomes in a primitive species Prorocentrum micans E.
- Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase
- Distributed hierarchical processing in the primate cerebral cortex
- Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil
- Distribution of entropy production for a colloidal particle in a nonequilibrium steady state
- Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats
- Distribution of work in isothermal nonequilibrium processes
- Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator
- Does replication‐induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?
- Dorit Aharonov
- Drivers of bacterial maintenance and minimal energy requirements
- Dropbox Quick Start
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3
- Dynamic DNA nanotechnology using strand-displacement reactions
- Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes
- Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation
- Dynamic mapping at the laminar level of odor-elicited responses in rat olfactory bulb by functional MRI.
- Dynamic reconfiguration of human brain networks during learning
- Dynamical consequences of lesions in cortical networks
- Dynamical ensembles in nonequilibrium statistical mechanics
- Dynamical fluctuations for periodically driven diffusions
- Dynamical reconnection and stability constraints on cortical network architecture
- Dynamics and memory of heterochromatin in living cells
- Dynamics of a tracer granular particle as a nonequilibrium Markov process
- Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations.
- Dynamics of cooperativity in chemical sensing among cell-surface receptors
- Dynamics of inherently bounded histone modification domains
- Dynamics of market correlations: Taxonomy and portfolio analysis
- Dynamo: Amazon’s Highly Available Key-value Store
- ERSA: Error resilient system architecture for probabilistic applications
- Earliest evidence of modern human life history in North African early Homo sapiens.
- Early metazoan life: divergence, environment and ecology
- Earth mover's distance as a metric for image retrieval
- Easiness Assumptions and Hardness Tests: Trading Time for Zero Error
- Ecology, the Ascendent Perspective
- Ecology and Energetics of Encephalization in Hominid Evolution
- Edith Cohen
- Effect of feedback on the fidelity of information transmission of time-varying signals
- Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors
- Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension
- Effective temperature of active matter
- Effective temperature of red-blood-cell membrane fluctuations
- Effective temperatures in driven systems: Static versus time-dependent relations
- Effective temperatures of a driven, strongly anisotropic Brownian system
- Effective temperatures of a heated Brownian particle
- Effects of reservoir squeezing on quantum systems and work extraction
- Efficiencies of a molecular motor: a generic hybrid model applied to the F1-ATPase
- Efficiency and cost of economical brain functional networks
- Efficiency and fluctuation in tight-coupling model of molecular motor
- Efficiency at Maximal Power of Minimal Nonlinear Irreversible Heat Engines
- Efficiency at maximum power: An analytically solvable model for stochastic heat engines
- Efficiency at maximum power of Feynman's ratchet as a heat engine
- Efficiency at maximum power of thermally coupled heat engines
- Efficiency at maximum power output of linear irreversible Carnot-like heat engines
- Efficiency of Brownian motors in terms of entropy production rate
- Efficiency of a Carnot engine at maximum power output
- Efficiency of autonomous soft nanomachines at maximum power
- Efficiency of cellular information processing
- Efficiency of free energy transduction in autonomous systems
- Efficiency of functional brain networks and intellectual performance.
- Efficiency of information transmission by retinal ganglion cells
- Efficiency of molecular machines with continuous phase space
- Efficiency of molecular motors at maximum power
- Efficient behavior of small-world networks
- Efficient checking of computations
- Efficient extraction of free energy profiles from nonequilibrium experiments
- Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits
- Efficient randomized pattern-matching algorithms
- Efficient turing-universal computation with DNA polymers
- Einstein relation generalized to nonequilibrium
- Electromagnetic gauge-freedom and work
- Electrophysiological and Morphological Amygdaloid Neurons in vitro Properties of Rat Basolateral
- Electrophysiological classes of cat primary visual cortical neurons in vivo as revealed by quantitative analyses.
- Electrophysiological properties of rat lateral parabrachial neurons in vitro
- Electrophysiology of interneurons in the glomerular layer of the rat olfactory bulb.
- Elements of Information Theory
- Elements of Information Theory 2nd Edition
- Emergent complex neural dynamics
- Encoding and Error-Correction Procedures for the Bose-Chaudhuri Codes
- End of Moore's law: Thermal (noise) death of integration in micro and nano electronics
- Energetic basis of brain activity: Implications for neuroimaging
- Energetic demand of multiple dependents and the evolution of slow human growth
- Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions
- Energetics and the Evolution of the Genus Homo
- Energetics and the evolution of human brain size
- Energetics of functional activation in neural tissues
- Energy-Efficient Information Transfer by Visual Pathway Synapses
- Energy-Efficient Sensing with the Low Power, Energy Aware Processing (LEAP) Architecture
- Energy-efficient action potentials in hippocampal mossy fibers.
- Energy-efficient neuronal computation via quantal synaptic failures.
- Energy Aware Computing Through Probabilistic Switching: A Study of Limits
- Energy Balance for Analysis of Complex Metabolic Networks
- Energy Cost of Proofreading to Increase Fidelity of Transfer Ribonucleic Acid Aminoacylation
- Energy Efficient Neural Codes
- Energy allocation between brain and body during ontogenetic development
- Energy as a constraint on the coding and processing of sensory information
- Energy aware computing through probabilistic switching: A study of limits
- Energy balance for analysis of complex metabolic networks.
- Energy conversion by molecular motors coupled to nucleotide hydrolysis
- Energy dissipation and noise correlations in biochemical sensing
- Energy dissipation and violation of the fluctuation-response relation in nonequilibrium Langevin systems
- Energy dissipation in an adaptive molecular circuit
- Energy efficient neural codes.
- Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics
- Energy flows in low-entropy complex systems
- Energy limitation as a selective pressure on the evolution of sensory systems
- Energy metabolism of rabbit retina as related to function: high cost of Na+ transport.
- Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations
- Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium
- Energy use constrains brain information processing
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina
- Engineering complex riboswitch regulation by dual genetic selection
- Engineering precision RNA molecular switches
- Enhancing server availability and security through failure-oblivious computing
- Enstrophy dissipation in two-dimensional turbulence
- Entropic tension in crowded membranes
- Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature
- Entropy 2018
- Entropy Production in Nonequilibrium Systems at Stationary States
- Entropy Production of Brownian Macromolecules with Inertia
- Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States
- Entropy fluctuations in shell models of turbulence
- Entropy involved in fidelity of DNA replication
- Entropy production along a stochastic trajectory and an integral fluctuation theorem
- Entropy production and fluctuation relations for a KPZ interface
- Entropy production and fluctuation theorem along a stochastic limit cycle
- Entropy production and fluctuation theorems under feedback control: The molecular refrigerator model revisited
- Entropy production and the arrow of time
- Entropy production as correlation between system and reservoir
- Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences
- Entropy production for mechanically or chemically driven biomolecules
- Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics
- Entropy production in full phase space for continuous stochastic dynamics
- Entropy production in the nonequilibrium steady states of interacting many-body systems
- Entropy production of a bound nonequilibrium interface
- Entropy production of cyclic population dynamics
- Entropy production theorems and some consequences
- Entropy roduction and Coarse-Graining in Markov Processes
- Environment-Assisted Invariance, Entanglement, and Probabilities in Quantum Physics
- Enzyme-free nucleic acid dynamical systems
- Enzyme-free nucleic acid logic circuits
- Eon: A Language and Runtime System for Perpetual Systems
- Epigenetic regulation by long noncoding RNAs.
- Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier
- Epigenetics in alternative pre-mRNA splicing
- Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale
- Equality Connecting Energy Dissipation with a Violation of the Fluctuation-Response Relation
- Equation of state in a small system: Violation of an assumption of Maxwell's demon
- Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach
- Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality
- Equilibrium microstates which generate second law violating steady states
- Eric Libby
- Erik Demaine
- Erik Winfree
- Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389))
- Erratum: Nonequilibrium fluctuations, fluctuation theorems, and counting statistics in quantum systems
- Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics)
- Escorted free energy simulations
- Escorted free energy simulations: Improving convergence by reducing dissipation
- Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models
- Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments
- Ethernet: distributed packet switching for local computer networks
- Eukaryotic organisms in Proterozoic oceans
- Eulerian and lagrangian pictures of non-equilibrium diffusions
- Evaluating sums over the Matsubara frequencies
- Every Prime Has a Succinct Certificate
- Evidence based psychotherapy : special case or special pleading?
- Evidence for early life in Earth's oldest hydrothermal vent precipitates
- Evolution of Time Coding Systems
- Evolution of human growth spurts.
- Evolution of the brain and intelligence
- Evolutionary tradeoffs in cellular composition across diverse bacteria
- Evolving Coordinated Behavior by Maximizing Information Structure
- Evolving Patches for Software Repair
- Exact Solution for the Optimal Neuronal Layout Problem
- Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator
- Exact stochastic simulation of coupled chemical reactions
- Exactly solvable model for driven dissipative systems
- Exciton-polariton Bose-Einstein condensation
- Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond
- Expanders, randomness, or time versus space: Extended abstract
- Experience-dependent rescaling of entorhinal grids
- Experience and Activity-Dependent Maturation of Perisomatic GABAergic Innervation in Primary Visual Cortex during a Postnatal Critical Period
- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State
- Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states
- Experimental and Theoretical Approaches to Conscious Processing
- Experimental demonstration of a latch in clocked quantum-dot cellular automata
- Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality
- Experimental demonstration of violations of the second law of thermodynamics for small systems and short time scales
- Experimental implementation of a nonthermalizing quantum thermometer
- Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon
- Experimental study of the fluctuation theorem in a nonequilibrium steady state
- Experimental test of Hatano and Sasa's nonequilibrium steady-state equality
- Experimental test of environment-assisted invariance
- Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows
- Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates
- Experimental test of the quantum Jarzynski equality with a trapped-ion system
- Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements
- Experimental verification of Landauer's principle in erasure of nanomagnetic memory bits
- Experimental verification of Landauer's principle linking information and thermodynamics
- Experiments in Stochastic Thermodynamics: Short History and Perspectives
- Explicit Constructions of Concentrators
- Exploiting Soft Computing for Increased Fault Tolerance
- Exploiting correlation in stochastic circuit design
- Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit
- Exponential growth by cross-catalytic cleavage of deoxyribozymogens.
- Extended fluctuation-dissipation theorem for soft matter in stationary flow
- Extended heat-fluctuation theorems for a system with deterministic and stochastic forces
- Extension of the fluctuation theorem
- Extinction in neutrally stable stochastic Lotka-Volterra models
- Extracting work from a single heat bath through feedback
- Extracting work from a single heat bath via vanishing quantum coherence
- Extractors and pseudorandom generators
- Extraordinary neoteny of synaptic spines in the human prefrontal cortex
- Facilitated target location in biological systems
- Factor graphs and the sum-product algorithm
- Factoring numbers in O(logn) arithmetic steps
- Failure of the work-hamiltonian connection for free-energy calculations
- Far-from-equilibrium measurements of thermodynamic length
- Fast-growth thermodynamic integration: Error and efficiency analysis
- Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera
- Fast computation by population protocols with a leader
- Fast reconfiguration of high-frequency brain networks in response to surprising changes in auditory input
- Fast signals and slow marks: the dynamics of histone modifications
- Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees
- Fat synthesis in adipose tissue. An examination of stoichiometric constraints
- Fault Tolerant Quantum Computation
- Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain
- Feedback control in a collective flashing ratchet
- Feedforward Inhibition of Projection Neurons by Fast-Spiking GABA Interneurons in the Rat Striatum In Vivo
- Feynman's ratchet and pawl: an exactly solvable model
- Feynman's ratchet optimization: Maximum power and maximum efficiency regimes
- Fifty years of the VSEPR model
- Finite-time erasing of information stored in fermionic bits
- Finite-time thermodynamics for a single-level quantum dot
- Finite Automata and Their Decision Problems
- Finite time thermodynamic optimization or entropy generation minimization of energy systems
- Fitness Distance Correlation as a Measure of Problem Difficulty for Genetic Algorithms
- Fitness flux and ubiquity of adaptive evolution
- Flaked stones and old bones: Biological and cultural evolution at the dawn of technology
- Flight of the FINCH through the java wilderness
- Florent Krzakala
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models
- Fluctuation-dissipation relations for Markov processes
- Fluctuation-dissipation relations in driven dissipative systems
- Fluctuation-dissipation theorem in nonequilibrium steady states
- Fluctuation-dissipation theorems and entropy production in relaxational systems
- Fluctuation-preserving coarse graining for biochemical systems
- Fluctuation Theorems
- Fluctuation and dissipation in liquid-crystal electroconvection
- Fluctuation dissipation relations far from equilibrium
- Fluctuation ratios in the absence of microscopic time reversibility
- Fluctuation relation and heterogeneous superdiffusion in glassy transport
- Fluctuation relations and coarse-graining
- Fluctuation relations and rare realizations of transport observables
- Fluctuation relations for a driven Brownian particle
- Fluctuation relations for current components in mesoscopic electric circuits
- Fluctuation relations for molecular motors
- Fluctuation symmetries for work and heat
- Fluctuation theorem and large deviation function for a solvable model of a molecular motor
- Fluctuation theorem applied to F1-ATPase
- Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer
- Fluctuation theorem for a single enzym or molecular motor
- Fluctuation theorem for arbitrary open quantum systems
- Fluctuation theorem for birth-death or chemical master equations with time-dependent rates
- Fluctuation theorem for currents and Schnakenberg network theory
- Fluctuation theorem for nonequilibrium reactions
- Fluctuation theorem for partially masked nonequilibrium dynamics
- Fluctuation theorem for stochastic dynamics
- Fluctuation theorem for stochastic systems.
- Fluctuation theorem for the flashing ratchet model of molecular motors
- Fluctuation theorem for transport in mesoscopic systems
- Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics
- Fluctuation theorems: Work is not an observable
- Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors
- Fluctuation theorems for a molecular refrigerator
- Fluctuation theorems for an asymmetric rotor in a granular gas
- Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains
- Fluctuation theorems for harmonic oscillators
- Fluctuation theorems for non-linear generalized Langevin systems
- Fluctuation theorems for quantum master equations
- Fluctuation theorems for quantum processes
- Fluctuation theorems for stochastic dynamics
- Fluctuation theorems in the presence of information gain and feedback
- Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap
- Fluctuations and irreversible processes
- Fluctuations and response in a non-equilibrium micron-sized system
- Fluctuations of energy flux in a simple dissipative out-of-equilibrium system
- Fluctuations of internal energy flow in a vibrated granular gas
- Fluctuations of the total entropy production in stochastic systems