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From Thermodynamics of Computation
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List of results
- Dynamics of market correlations: Taxonomy and portfolio analysis + (A. Chakraborti)
- Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence + (A. Crisanti)
- A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium + (A. E. Allahverdyan)
- Electromagnetic gauge-freedom and work + (A. E. Allahverdyan)
- Asymptotics of work distributions in nonequilibrium systems + (A. Engel)
- Jarzynski equation for a simple quantum system: Comparing two definitions of work + (A. Engel)
- On the energetics of information exchange + (J. Hoppenau)
- Curie's principle + (A. F. Chalmers)
- Progressive methylation of ageing histones by Dot1 functions as a timer + (Dirk De Vos)
- Incremental growth tables: Supplementary to previously published charts + (R. N. Baumgartner)
- Weight consistency specifies regularities of macaque cortical networks + (N. T. Markov)
- Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements + (L. Fusco)
- Optimal Process Paths for Endoreversible Systems + (K. H. Hoffmann)
- Principles of Population Genetics. + (R. M. Cormack)
- Observation of non-Hermitian degeneracies in a chaotic exciton-polariton billiard + (T. Gao)
- Lower bounds on dissipation upon coarse graining + (A. Gomez-Marin)
- Tight coupling in thermal Brownian motors + (A. Gomez-Marin)
- Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state + (A. Gomez-Marin)
- Fluctuation relations for a driven Brownian particle + (A. Imparato)
- The distribution function of entropy flow in stochastic systems + (A. Imparato)
- Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments + (A. Imparato)
- Irreversibility-to-reversibility crossover in transient response of an optically trapped particle + (Manas Khan)
- Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle + (Nitin Kumar)
- Dynamics of market correlations: Taxonomy and portfolio analysis + (J. P. Onnela)
- Principles of control thermodynamics + (P. Salamon)
- Ramanujan graphs + (A. Lubotzky)
- Using bijective maps to improve free-energy estimates + (A. M. Hahn)
- Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field + (Arnab Saha)
- Fluctuation theorems in the presence of information gain and feedback + (Sourabh Lahiri)
- Bona fide stochastic resonance: A view point from stochastic energetics + (Debasis Dan)
- Entropy production theorems and some consequences + (Arnab Saha)
- Total entropy production fluctuation theorems in a nonequilibrium time-periodic steady state + (S. Lahiri)
- Microrheology and the fluctuation theorem in dense colloids + (L. G. Wilson)
- Experimental implementation of a nonthermalizing quantum thermometer + (C. Raitz)
- Self-regulating gene: An exact solution + (J. E.M. Hornos)
- The emergence of human uniqueness: Characters underlying behavioral modernity + (Kim Hill)
- Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans + (Robert Walker)
- New device for high-throughput viability screening of flow biofilms + (Michael R. Benoit)
- Feynman's ratchet optimization: Maximum power and maximum efficiency regimes + (S. Velasco)
- On the Relation between Gradient Flows and the Large-Deviation Principle, with Applications to Markov Chains and Diffusion + (A. Mielke)
- Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes + (A. Mossa)
- Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation + (M. Manosas)
- Tight estimates for eigenvalues of regular graphs + (A. Nilli)
- What Does the Retina Know about Natural Scenes? + (Joseph J. Atick)
- Neurophysiological investigation of the basis of the fMRI signal + (N. K. Logothetis)
- Nonequilibrium steady-state fluctuations in actively cooled resonators + (M. Bonaldi)
- Path integrals with generalized Grassmann variables + (M. Chaichian)
- Work fluctuations in a nematic liquid crystal + (S. Joubaud)
- Work and dissipation fluctuations near the stochastic resonance of a colloidal particle + (P. Jop)
- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State + (J. R. Gomez-Solano)
- Heat fluctuations in a nonequilibrium bath + (J. R. Gomez-Solano)
- Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models + (F. Douarche)
- An experimental test of the Jarzynski equality in a mechanical experiment + (F. Douarche)
- Steady-state fluctuation relations for systems driven by an external random force + (J. R. Gomez-Solano)
- Work fluctuation theorems for harmonic oscillators + (F. Douarche)
- Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice + (M. Antoniotti)
- Relevance of initial and final conditions for the fluctuation relation in Markov processes + (A. Puglisi)
- On anomalous diffusion and the out of equilibrium response function in one-dimensional models + (D. Villamaina)
- Irreversible dynamics of a massive intruder in dense granular fluids + (A. Sarracino)
- Irreversible effects of memory + (A. Puglisi)
- Injected power and entropy flow in a heated granular gas + (P. Visco)
- Statistics of entropy production in linearized stochastic Systems + (K. Turitsyn)
- Giant acceleration of free diffusion by use of tilted periodic potentials + (P. Reimann)
- Observation of the Kibble-Zurek scaling law for defect formation in ion crystals + (S. Ulm)
- Optimum walking techniques for idealized animals + (A. S. Jayes)
- Probabilistic mapping and volume measurement of human primary auditory cortex + (J. Rademacher)
- Three-dimensional simulations of reversible bimolecular reactions: The simple target problem + (A. V. Popov)
- Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor + (A. W.C. Lau)
- The anatomical distance of functional connections predicts brain network topology in health and schizophrenia + (Aaron F. Alexander-Bloch)
- Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis + (Aaron Fluitt)
- How the nature of an observation affects single-trajectory entropies + (Ying Li)
- Computed tomography-estimated specific gravity of noncontused brain areas as a marker of severity in human traumatic brain injury + (Vincent Degos)
- Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements + (Amar Nath Gupta)
- Nonequilibrium work fluctuations for oscillators in non-Markovian baths + (Trieu Mai)
- Application of importance sampling to the computation of large deviations in nonequilibrium processes + (Anupam Kundu)
- Generating function formula of heat transfer in harmonic networks + (Keiji Saito)
- Work distribution functions for hysteresis loops in a single-spin system + (Rahul Marathe)
- Heat conduction in a three dimensional anharmonic crystal + (Keiji Saito)
- Large deviations of heat flow in harmonic chains + (Anupam Kundu)
- Aerobic glycolysis in the human brain is associated with development and neotenous gene expression + (Manu S. Goyal)
- Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior + (Michael D. Fox)
- Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion + (Jonathan D. Power)
- Energy allocation between brain and body during ontogenetic development + (Britta Kubera)
- The selfish brain: Competition for energy resources + (Achim Peters)
- The sniff as a unit of olfactory processing + (Adam Kepecs)
- Odorant representations are modulated by intra- but not interglomerular presynaptic inhibition of olfactory sensory neurons + (John P. McGann)
- CNS energy metabolism as related to function + (Adelbert Ames)
- On the generation of cryptographically strong pseudo-random sequences + (Adi Shamir)
- Factoring numbers in O(logn) arithmetic steps + (Adi Shamir)
- Disjointness is hard in the multiparty number-on-the-forehead model + (Troy Lee)
- A model for transmission of the H3K27me3 epigenetic mark + (Klaus H. Hansen)
- An analytical solution to the kinetics of breakable filament assembly + (Christopher A. Waudby)
- Physical Responses of Bacterial Chemoreceptors + (Ady Vaknin)
- The chromatin code of fungal secondary metabolite gene clusters + (Agnieszka Gacek)
- Evaluating sums over the Matsubara frequencies + (Agustin Nieto)
- Neurometabolic coupling in cerebral cortex reflects synaptic more than spiking activity + (Ahalya Viswanathan)
- A Map of the Interactome Network of the Metazoan C. elegans + (Siming Li)
- Defining Network Topologies that Can Achieve Biochemical Adaptation + (Wenzhe Ma)
- Fluctuations of internal energy flow in a vibrated granular gas + (Andrea Puglisi)
- The effects of spatial constraints on the evolution of weighted complex networks + (Alain Barrat)
- Reversible space equals deterministic space + (Klaus Jörn Lange)
- Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI + (Zhang J. Chen)
- Revealing modular architecture of human brain structural networks by using cortical thickness from MRI + (Zhang J. Chen)
- Uncovering intrinsic modular organization of spontaneous brain activity in humans + (Yong He)
- Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice + (Nixon M. Abraham)
- Image quality assessment: From error visibility to structural similarity + (Zhou Wang)
- Less haste, less waste: On recycling and its limits in strand displacement systems + (Anne Condon)
- Channel noise in neurons + (John A. White)
- The quiet revolution of numerical weather prediction + (Peter Bauer)
- Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins + (Christopher Dean)
- ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light + (Haruhisa Okawa)
- Neuroenergetics and the kinetic design of excitatory synapses + (David Attwell)
- On a hypothetical generational relationship between HCN and constituents of the reductive citric acid cycle + (Albert Eschenmoser)
- Work and heat probability distributions in out-of-equilibrium systems + (Alberto Imparato)
- Heat distribution function for motion in a general potential at low temperature + (Hans C. Fogedby)
- Probability density functions of work and heat near the stochastic resonance of a colloidal particle + (Alberto Imparato)
- Heat flow in chains driven by thermal noise + (Hans C. Fogedby)
- Reconstructing the free-energy landscape of a mechanically unfolded model protein + (Alberto Imparato)
- A bound particle coupled to two thermostats + (Hans C. Fogedby)
- Epigenetics in alternative pre-mRNA splicing + (Reini F. Luco)
- Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications + (Alessandra Faggionato)
- Transient fluctuation relations for time-dependent particle transport + (Alexander Altland)
- Fluctuation relations and rare realizations of transport observables + (Alexander Altland)
- Measurement of work in single-molecule pulling experiments + (Alessandro Mossa)
- Nonlinear response and fluctuation-dissipation relations + (Eugenio Lippiello)
- Modelling dynamical processes in complex socio-technical systems + (Alessandro Vespignani)
- Disrupted axonal fiber connectivity in schizophrenia + (Andrew Zalesky)
- Schizophrenia, neuroimaging and connectomics + (Alex Fornito)
- What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? + (Alex Fornito)
- Optimal protocols for minimal work processes in underdamped stochastic thermodynamics + (Alex Gomez-Marin)
- Thermodynamics of statistical inference by cells + (Alex H. Lang)
- The mechanics and fluctuation spectrum of active gels + (Alex J. Levine)
- Measurement of damping and temperature: Precision bounds in Gaussian dissipative channels + (Alex Monras)
- Local potential connectivity in cat primary visual cortex + (Armen Stepanyants)
- Age-related changes in modular organization of human brain functional networks + (David Meunier)
- Pseudorandom generators hard for k-DNF resolution and polynomial calculus resolution + (Alexander A. Razborov)
- Lower bounds for polynomial calculus: Non-binomial case + (Mic hael Alekhnovich)
- Natural Proofs + (Alexander A. Razborov)
- Resolution lower bounds for the weak functional pigeonhole principle + (Alexander A. Razborov)
- One rule to grow them all: A general theory of neuronal branching and its practical application + (Hermann Cuntz)
- Randomness-efficient sampling within NC1 + (Alexander D. Healy)
- Inequalities for Non-equilibrium Fluctuations of Work + (Alexander Davydov)
- Extinction in neutrally stable stochastic Lotka-Volterra models + (Alexander Dobrinevski)
- Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions + (Alexander J. Ruthenburg)
- Functional brain networks develop from a "local to distributed" organization + (Damien A. Fair)
- Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport + (Alexander M. Berezhkovskii)
- Effect of ligand diffusion on occupancy fluctuations of cell-surface receptors + (Alexander M. Berezhkovskii)
- Resolution of nested neuronal representations can be exponential in the number of neurons + (Alexander Mathis)
- TrxG and PcG proteins but not methylated histones remain associated with DNA through replication + (Svetlana Petruk)
- Histone modifications at human enhancers reflect global cell-type-specific gene expression + (Nathaniel D. Heintzman)
- Correcting errors beyond the Guruswami-Sudan radius in polynomial time + (Farzad Parvaresh)
- Minimal model for Brownian vortexes + (Bo Sun)
- Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease + (Omar Haq)
- Tomographic testing and validation of probabilistic circuits + (Alexandru Paler)
- Supersymmetry and fluctuation relations for currents in closed networks + (Nikolai A. Sinitsyn)
- Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations + (Bohdan I. Lev)
- Experimental demonstration of a latch in clocked quantum-dot cellular automata + (Alexei O. Orlov)
- Non-equilibrium equalities with unital quantum channels + (Alexey E. Rastegin)
- Jarzynski equality for quantum stochastic maps + (Alexey E. Rastegin)
- Building programmable jigsaw puzzles with RNA + (Arkadiusz Chworos)
- Molecular taxonomy of major neuronal classes in the adult mouse forebrain + (Ken Sugino)
- A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb + (Ana Raquel Pengelly)
- Argonaute proteins couple chromatin silencing to alternative splicing + (Maya Ameyar-Zazoua)
- Time-dependent pseudo-Hermitian Hamiltonians defining a unitary quantum system and uniqueness of the metric operator + (Ali Mostafazadeh)
- Delayed stochastic decoding of LDPC codes + (Ali Naderi)
- Tracking forecast memories for stochastic decoding + (Saeed Sharifi Tehrani)
- Holographic Second Laws of Black Hole Thermodynamics + (Alice Bernamonti)
- How Far is Complex Balancing from Detailed Balancing? + (Alicia Dickenstein)
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity + (Matthew D. Young)
- Quantum work distribution for a driven diatomic molecule + (Alison Leonard)
- Approximate counting, uniform generation and rapidly mixing Markov chains + (Alistair Sinclair)
- Signal focusing through active transport + (Aljaž Godec)
- The TAU parallel performance system + (Sameer S. Shende)
- A DNA-fuelled molecular machine made of DNA + (Bernard Yurke)
- Article for analog vector algebra computation + (Allen P. Mills)
- Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity + (Alon Kaufman)
- Stretching the limits of clock-gating efficiency in server-class processors + (Hans Jacobson)
- Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks + (Andrea Hasenstaub)
- Nucleosomes are well positioned in exons and carry characteristic histone modifications + (Robin Andersson)
- Spontaneously emerging cortical representations of visual attributes + (Tal Kenet)
- Novel algorithms for fast statistical analysis of scaled circuits + (Amith Singhee)
- A fast and elitist multiobjective genetic algorithm: NSGA-II + (Kalyanmoy Deb)
- Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance + (Amy L. Bauernfeind)
- Energetics and the evolution of human brain size + (Ana Navarrete)
- Low-power digital signal processing using approximate adders + (Vaibhav Gupta)
- Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights + (Anatole S. Dekaban)
- Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees + (Anders Dessmark)
- Characterization of the RNA content of chromatin + (Tanmoy Mondal)
- Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMENTHYLASE3 + (Anders M. Lindroth)
- Stochastic thermodynamics with information reservoirs + (Andre C. Barato)
- Efficiency of cellular information processing + (Andre C. Barato)
- Rate of Mutual Information Between Coarse-Grained Non-Markovian Variables + (Andre C. Barato)
- Thermodynamic Uncertainty Relation for Biomolecular Processes + (Andre C. Barato)
- A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes + (Andre Cardoso Barato)
- Convergence in the olfactory system: quantitative aspects of odour sensitivity + (Wim van Drongelen)
- A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering + (Andrea Arcuri)
- High nucleosome occupancy is encoded at human regulatory sequences + (Desiree Tillo)
- Effective temperatures in driven systems: Static versus time-dependent relations + (Corey S. O'Hern)
- Information, Physics, and Computation + (Marc Mézard)
- Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium + (Andrea Parmeggiani)
- Dynamics of a tracer granular particle as a nonequilibrium Markov process + (Andrea Puglisi)
- Computing the optimal protocol for finite-time processes in stochastic thermodynamics + (Holger Then)
- Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing + (Gunnar Schotta)
- Structure and function of a human TAF(II)250 double bromodomain module + (Raymond H. Jacobson)
- Probing molecular free energy landscapes by periodic loading + (Oliver Braun)
- Efficient physical embedding of topologically complex information processing networks in brains and computer circuits + (Danielle S. Bassett)
- Functional brain network efficiency predicts intelligence + (Nicolas Langer)
- How much non-coding DNA do eukaryotes require? + (Sebastian E. Ahnert)
- Computational selection of nucleic acid biosensors via a slip structure model + (Bradley Hall)
- Deoxyribozymes that recode sequence information + (Jeffrey J. Tabor)
- Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain + (Andrew J. Bannister)
- Programmable energy landscapes for kinetic control of DNA strand displacement + (Thomas E. Ouldridge)
- Combinatorial displacement of DNA strands: Application to matrix multiplication and weighted sums + (Anthony J. Genot)
- Proactive Control of Approximate Programs + (Xin Sui)
- Optimal Prediction by Cellular Signaling Networks + (Nils B. Becker)
- Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host + (Winston Timp)
- Programmable chemical controllers made from DNA + (Yuan Jyue Chen)
- Modular verification of chemical reaction network encodings via serializability analysis + (Matthew R. Lakin)
- Visual DSD: A design and analysis tool for DNA strand displacement systems + (Matthew R. Lakin)
- Modelling, simulating and verifying Turing-powerful strand displacement systems + (Matthew R. Lakin)
- Computational design of nucleic acid feedback control circuits + (Boyan Yordanov)
- Good practices in free-energy calculations + (Andrew Pohorille)
- Thermodynamics of trajectories and local fluctuation theorems for harmonic quantum networks + (Simon Pigeon)
- The lac repressor displays facilitated diffusion in living cells + (Petter Hammar)
- Energy conversion by molecular motors coupled to nucleotide hydrolysis + (Reinhard Lipowsky)
- Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints + (Anirikh Chakrabarti)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina + (Peter B. Detwiler)
- Cube v4: From performance report explorer to performance analysis tool + (Pavel Saviankou)
- The microvascular system of the striate and extrastriate visual cortex of the macaque + (Bruno Weber)
- Calcium signalling and regulation in olfactory neurons + (Anna Menini)
- Reachability bounds for chemical reaction networks and strand displacement systems + (Anne Condon)
- Revision of Dietary Reference Intakes for energy in preschool-age children + (Nancy F. Butte)
- Cooperative binding of two acetylation marks on a histone tail by a single bromodomain + (Jeanne Morinière)
- Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels + (Sylvia C. Tippmann)
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements + (Anshul Kundaje)
- The 'independent components' of natural scenes are edge filters + (Anthony J. Bell)
- Thermodynamics of prediction + (Susanne Still)
- The connection between logical and thermodynamic irreversibility + (James Ladyman)
- Split decision: What happens to nucleosomes during DNA replication? + (Anthony T. Annunziato)
- Small-world properties of nonlinear brain activity in schizophrenia + (Mikail Rubinov)
- Experimental verification of Landauer's principle linking information and thermodynamics + (Antoine Bérut)
- Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation + (Bart P. Vos)
- Histone H3 tail clipping regulates gene expression + (Helena Santos-Rosa)
- Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation + (Ara Kocharyan)
- Integrated information increases with fitness in the evolution of animats + (Jeffrey A. Edlund)
- Complex and detailed balancing of chemical reaction networks revisited + (Arjan van der Schaft)
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks + (Shodhan Rao)
- A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions + (Marcus Kaiser)
- Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information + (Armelle Corpet)
- Thermodynamic efficiency of information and heat flow + (Armen E. Allahverdyan)
- STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis + (Armin Alaghi)
- Exploiting correlation in stochastic circuit design + (Armin Alaghi)
- A spectral transform approach to stochastic circuits + (Armin Alaghi)
- The intractability of resolution + (Armin Haken)
- Work probability distribution and tossing a biased coin + (Arnab Saha)
- Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions + (Petr Chvosta)
- Optimized free energies from bidirectional single-molecule force spectroscopy + (David D.L. Minh)
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models + (Bernhard Altaner)
- Fluctuations and response in a non-equilibrium micron-sized system + (Juan Ruben Gomez-Solano)
- Discriminatory proofreading regimes in nonequilibrium systems + (Arvind Murugan)
- Interpreting hippocampal function as recoding and forecasting + (William B. Levy)
- Patterns and mechanisms of Ancestral Histone protein inheritance in Budding yeast + (Marta Radman-Livaja)
- The cell cycle switch computes approximate majority + (Luca Cardelli)
- Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid + (Huan Xiang Zhou)
- Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation + (Irina V. Gopich)
- Theory of reversible diffusion-influenced reactions + (Noam Agmon)
- Quantum-to-classical transition in the work distribution for chaotic systems + (Ignacio García-Mata)
- Instrumentation applications of multibit random-data representation + (Emil M. Petriu)
- Hardness vs randomness + (Noam Nisan)
- On rank vs. communication complexity + (Noam Nisan)
- Monotone Circuits for Connectivity Require Super-Logarithmic Depth + (Mauricio Karchmer)
- Fast signals and slow marks: the dynamics of histone modifications + (Teresa K. Barth)
- Experimental verification of Landauer's principle in erasure of nanomagnetic memory bits + (J Hong)
- Efficiency of a Carnot engine at maximum power output + (F. L. Curzon)
- Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths + (B. Altaner)
- Neurochemical organization of the macaque striate cortex: Correlation of cytochrome oxidase with Na+K+ATPase, NADPH-diaphorase, nitric oxide synthase, and N-methyl-D-aspartate receptor subunit 1 + (M. Wong-Riley)
- The superfamily of heme-copper respiratory oxidases + (J. A. Garcia-Horsman)
- Reaching optimal efficiencies using nanosized photoelectric devices + (B. Rutten)
- Small-world networks and functional connectivity in Alzheimer's disease + (C. J. Stam)
- Nucleosome positioning and gene regulation: Advances through genomics + (Cizhong Jiang)
- Nucleosome organization in the Drosophila genome + (Travis N. Mavrich)
- Stochastic thermodynamics and sustainable efficiency in work production + (B. Gaveau)
- Constrained maximal power in small engines + (B. Gaveau)
- Stochastic dynamics, efficiency and sustainable power production + (M. Moreau)
- BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study + (R. J. Silverwood)
- Role of hidden slow degrees of freedom in the fluctuation theorem + (J. Mehl)
- Histone acetylation as an epigenetic determinant of long-term transcriptional competence + (B. M. Turner)
- Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow. + (B. R. Duling)
- Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states + (R. K.P. Zia)
- A possible classification of nonequilibrium steady states + (B. Schmittmann)
- Improved thermometry of low-temperature quantum systems by a ring-structure probe + (Li Sha Guo)
- Chromatin computation + (Barbara Bryant)
- Humans are not cooperative breeders but practice biocultural reproduction + (Barry Bogin)
- Asymmetrically modified nucleosomes + (Philipp Voigt)
- Thermodynamic universality of quantum Carnot engines + (Bartłomiej Gardas)
- Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors + (Johann Elbaz)
- Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold + (Bella Shlyahovsky)
- Making molecular machines work + (Wesley R. Browne)
- Entropy production of cyclic population dynamics + (Benjamin Andrae)
- Dissipation Bound for Thermodynamic Control + (Benjamin B. Machta)
- Correlated evolution of nearby residues in drosophilid proteins + (Benjamin Callahan)
- Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains + (Benjamin Hertz Shargel)
- Realization of a feedback controlled flashing ratchet + (Benjamin J. Lopez)
- Wiring cost in the organization of a biological neuronal network + (Yong Yeol Ahn)
- Non-equilibrium steady states: Fluctuations and large deviations of the density and of the current + (Bernard Derrida)
- A general framework for non-equilibrium phenomena: The master equation and its formal consequences + (Bernard Gaveau)
- The conscious access hypothesis: Origins and recent evidence + (Bernard J. Baars)
- Perfect and near-perfect adaptation in a model of bacterial chemotaxis + (Bernardo A. Mello)
- Fluctuation-preserving coarse graining for biochemical systems + (Bernhard Altaner)
- Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations + (Mark A. Lever)
- Structural properties of the Caenorhabditis elegans neuronal network + (Lav R. Varshney)
- Quantum-classical correspondence principle for work distributions in a chaotic system + (Long Zhu)
- Rapid Neocortical Dynamics: Cellular and Network Mechanisms + (Bilal Haider)
- Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics + (Pinar Korkmaz)
- Readers of histone modifications + (Miyong Yun)
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome + (Nathaniel D. Heintzman)
- Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification + (Minjia Tan)
- Single-molecule thermodynamics: The heat distribution function of a charged particle in a static magnetic field + (Debarati Chatterjee)
- Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator + (Debarati Chatterjee)
- A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling + (Kevin J. Nowka)
- Current trends in finite-time thermodynamics + (Bjarne Andresen)
- Microbial life under extreme energy limitation + (Tori M. Hoehler)
- The Effect of Phenobarbitone Anaesthesia on Blood Flow and Oxygen Consumption in the Rat Brain + (Lorentz Nilsson)
- Seflab: A lab for measuring software energy footprints + (Miguel A. Ferreira)
- Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality + (Ioan Kosztin)
- Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell + (Nicolas Brunel)
- Neuroscience: Hemodynamic signals correlate tightly with synchronized gamma oscillations + (Jörn Niessing)
- Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension + (Boris Lander)
- An efficient 10GBASE-T ethernet LDPC decoder design with low error floors + (Zhengya Zhang)
- Genetic Algorithms, Tournament Selection, and the Effects of Noise + (Brad L Miller)
- Stochastic neural computation I: Computational elements + (Bradley D. Brown)
- The entropy and efficiency of a molecular motor model + (Eliran Boksenbojm)
- Dynamical fluctuations for periodically driven diffusions + (Navinder Singh)
- The limits of chemosensation vary across dimensions + (Brendan A. Bicknell)
- Quantum techniques for studying equilibrium in reaction networks + (John C. Baez)
- Factor graphs and the sum-product algorithm + (Frank R. Kschischang)
- Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking Neurons + (Brett C. Carter)
- Influence of combinatorial histone modifications on antibody and effector protein recognition + (Stephen M. Fuchs)
- Operating on chromatin, a colorful language where context matters + (Kathryn E. Gardner)
- A general model for ontogenetic growth + (Geoffrey B. West)
- A general model for the structure and allometry of plant vascular systems + (Geoffrey B. West)
- Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit + (Brian Lambson)
- New evidence for hominin carcass processing strategies at 1.5 Ma, Koobi Fora, Kenya + (Briana L. Pobiner)
- Response and habituation of the human amygdala during visual processing of facial expression + (Hans C. Breiter)
- Sparse coding with an overcomplete basis set: A strategy employed by V1? + (Bruno A. Olshausen)
- The statistical neuroanatomy of frontal networks in the macaque + (Bruno B. Averbeck)
- The adjustable nucleosome: An epigenetic signaling module + (Bryan M. Turner)
- Einstein relation generalized to nonequilibrium + (V. Blickle)
- Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential + (V. Blickle)
- Thermodynamic constraints on kinetic proofreading in biosynthetic pathways + (M. Ehrenberg)
- The physics of molecular motors + (C. Bustamante)
- Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies + (D. Collin)
- The connectional organization of the cortico-thalamic system of the cat + (J. W. Scannell)
- A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension + (C. Chatelain)
- Component-placement optimization in the brain + (M. P. Young)
- Translating the histone code + (T. Jenuwein)
- Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) + (C. Del Negro)
- Parallel fibre receptive fields of purkinje cells and interneurons are climbing fibre-specific + (C. F. Ekerot)
- Nonequilibrium mechanics of active cytoskeletal networks + (Daisuke Mizuno)
- Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator + (Y. Apertet)
- The complexity of facets (and some facets of complexity) + (C. H. Papadimitriou)
- Nitric oxide and adenosine mediate vasodilation during functional activation in cerebellar cortex + (J. Li)
- Characterizing plastic depinning dynamics with the fluctuation theorem + (J. A. Drocco)
- Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach + (C. Jarzynski)
- Nonequilibrium equality for free energy differences + (C. Jarzynski)
- Dissipation and lag in irreversible processes + (S. Vaikuntanathan)
- Stochasticity of gene products from transcriptional pulsing + (Srividya Iyer-Biswas)
- Invariant visual representation by single neurons in the human brain + (R. Quian Quiroga)
- Housekeeping entropy in continuous stochastic dynamics with odd-parity variables + (J. Yeo)
- Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows + (S. Ciliberto)
- Quantum entropy production as a measure of irreversibility + (I. Callens)
- An update on the nonequilibrium linear response + (M. Baiesi)
- Maxwell's demon assisted thermodynamic cycle in superconducting quantum circuits + (H. T. Quan)
- Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates + (S. Schuler)
- Measurement of stochastic entropy production + (C. Tietz)
- Statistics of power injection in a plate set into chaotic vibration + (O. Cadot)
- Second law and Landauer principle far from equilibrium + (C. Van Den Broeck)
- Thermoelectric efficiency at maximum power in a quantum dot + (K. Lindenberg)
- Finite-time thermodynamics for a single-level quantum dot + (R. Kawai)
- Jarzynski equality for the Jepsen gas + (I. Bena)
- Stochastic thermodynamics for linear kinetic equations + (C. Van Den Broeck)
- Symmetries of generating functionals of Langevin processes with colored multiplicative noise + (Camille Aron)
- Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild + (Nancy L. Barrickman)
- Costs of encephalization: the energy trade-off hypothesis tested on birds + (Karin Isler)
- Complex Extension of Quantum Mechanics + (Carl M. Bender)
- Real spectra in non-hermitian hamiltonians having PT symmetry + (Carl M. Bender)
- A (sub)graph isomorphism algorithm for matching large graphs + (Luigi P. Cordella)
- Earth mover's distance as a metric for image retrieval + (Yossi Rubner)
- Fuzzy Memoization for Floating-Point Multimedia Applications + (Carlos Alvarez)
- Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality + (Jan Liphardt)
- Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise + (Paul Maragakis)
- The folding cooperativity of a protein is controlled by its chain topology + (Elizabeth A. Shank)
- Performance assessment of multiobjective optimizers: An analysis and review + (Eckart Zitzler)
- Heat Release by Controlled Continuous-Time Markov Jump Processes + (Paolo Muratore-Ginanneschi)
- Optimal protocols and optimal transport in stochastic thermodynamics + (Erik Aurell)
- Boundary layers in stochastic thermodynamics + (Erik Aurell)
- Refined Second Law of Thermodynamics for Fast Random Processes + (Erik Aurell)
- Experience-dependent rescaling of entorhinal grids + (Caswell Barry)
- Perceiving the epigenetic landscape through histone readers + (Catherine A. Musselman)
- Genome-wide patterns of histone modifications in yeast + (Catherine B. Millar)