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From Thermodynamics of Computation
- Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 60, 2721-2726 (1999)
- Entropy production for mechanically or chemically driven biomolecules Journal of Statistical Physics 128, 77-93 (2007)
- Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics Journal of Chemical Physics 134, (2011)
- Entropy production in full phase space for continuous stochastic dynamics Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 85, (2012)
- Entropy production in the nonequilibrium steady states of interacting many-body systems ,
- Entropy production of a bound nonequilibrium interface Journal of Physics A: Mathematical and Theoretical 45, (2012)
- Entropy production of cyclic population dynamics Physical Review Letters 104, (2010)
- Entropy production theorems and some consequences Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80, (2009)
- Entropy roduction and Coarse-Graining in Markov Processes ,
- Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 81, (2010)
- Environment-Assisted Invariance, Entanglement, and Probabilities in Quantum Physics Physical Review Letters 90, 4 (2003)
- Enzyme-free nucleic acid dynamical systems Science 358, (2017)
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- Eon: A Language and Runtime System for Perpetual Systems ,
- Epigenetic regulation by long noncoding RNAs. ,
- Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier ,
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- Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale Annual Review of Condensed Matter Physics 2, 329-351 (2011)
- Equality Connecting Energy Dissipation with a Violation of the Fluctuation-Response Relation ,
- Equation of state in a small system: Violation of an assumption of Maxwell's demon EPL 80, (2007)
- Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 56, 5018-5035 (1997)
- Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality Science 296, 1832-1835 (2002)
- Equilibrium microstates which generate second law violating steady states Physical Review E 50, 1645-1648 (1994)
- Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) European Journal of Neuroscience 14, 1752 (2001)
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- Evolving Coordinated Behavior by Maximizing Information Structure Complexity 2, 323-329 (2006)
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- Exactly solvable model for driven dissipative systems Physical Review Letters 93, (2004)
- Exciton-polariton Bose-Einstein condensation Reviews of Modern Physics 82, 1489-1537 (2010)
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- Experience and Activity-Dependent Maturation of Perisomatic GABAergic Innervation in Primary Visual Cortex during a Postnatal Critical Period ,
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- Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State Physical Review Letters 103, (2009)
- Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82, (2010)
- Experimental and Theoretical Approaches to Conscious Processing Neuron 70, 200-227 (2011)
- Experimental demonstration of a latch in clocked quantum-dot cellular automata Applied Physics Letters 78, 1625-1627 (2001)
- Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality Nature Physics 6, 988-992 (2010)
- Experimental demonstration of violations of the second law of thermodynamics for small systems and short time scales ,
- Experimental implementation of a nonthermalizing quantum thermometer Quantum Information Processing 14, 37-46 (2015)
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- Experimental study of the fluctuation theorem in a nonequilibrium steady state Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 71, (2005)
- Experimental test of Hatano and Sasa's nonequilibrium steady-state equality ,
- Experimental test of environment-assisted invariance Physical Review A - Atomic, Molecular, and Optical Physics 91, (2015)
- Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows Physica A: Statistical Mechanics and its Applications 340, 240-250 (2004)
- Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates Physical Review Letters 94, (2005)
- Experimental test of the quantum Jarzynski equality with a trapped-ion system Nature Physics 11, 193-199 (2015)
- Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements Nature Physics 7, 631-634 (2011)
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- Exponential growth by cross-catalytic cleavage of deoxyribozymogens. ,
- Extended fluctuation-dissipation theorem for soft matter in stationary flow Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79, (2009)
- Extended heat-fluctuation theorems for a system with deterministic and stochastic forces Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 69, 14 (2004)
- Extension of the fluctuation theorem Physical Review Letters 91, (2003)
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- Fast computation by population protocols with a leader Distributed Computing 21, 183-199 (2008)
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- Fast-growth thermodynamic integration: Error and efficiency analysis Journal of Chemical Physics 114, 7330-7337 (2001)
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- Fat synthesis in adipose tissue. An examination of stoichiometric constraints ,
- Fault Tolerant Quantum Computation ,
- Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 86, (2012)
- Feedback control in a collective flashing ratchet Physical Review Letters 93, (2004)
- Feedforward Inhibition of Projection Neurons by Fast-Spiking GABA Interneurons in the Rat Striatum In Vivo ,
- Feynman's ratchet and pawl: an exactly solvable model ,
- Feynman's ratchet optimization: Maximum power and maximum efficiency regimes Journal of Physics D: Applied Physics 34, 1000-1006 (2001)
- Fifty years of the VSEPR model Coordination Chemistry Reviews 252, 1315-1327 (2008)
- Finite Automata and Their Decision Problems ,
- Finite time thermodynamic optimization or entropy generation minimization of energy systems Journal of Non-Equilibrium Thermodynamics 24, 327-359 (1999)
- Finite-time erasing of information stored in fermionic bits Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 87, (2013)
- Finite-time thermodynamics for a single-level quantum dot EPL 89, (2010)
- Fitness Distance Correlation as a Measure of Problem Difficulty for Genetic Algorithms ,
- Fitness flux and ubiquity of adaptive evolution ,
- Flaked stones and old bones: Biological and cultural evolution at the dawn of technology Yearbook of Physical Anthropology 47, 118-164 (2004)
- Flight of the FINCH through the java wilderness IEEE Transactions on Evolutionary Computation 15, 166-182 (2011)
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 92, (2015)
- Fluctuation Theorems ,
- Fluctuation and dissipation in liquid-crystal electroconvection Physical Review Letters 87, 245502-1-245502-4 (2001)
- Fluctuation dissipation relations far from equilibrium Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Fluctuation ratios in the absence of microscopic time reversibility Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79, (2009)
- Fluctuation relation and heterogeneous superdiffusion in glassy transport Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80, (2009)
- Fluctuation relations and coarse-graining Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Fluctuation relations and rare realizations of transport observables Physical Review Letters 105, (2010)
- Fluctuation relations for a driven Brownian particle Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74, (2006)
- Fluctuation relations for current components in mesoscopic electric circuits Physical Review B - Condensed Matter and Materials Physics 84, (2011)
- Fluctuation relations for molecular motors ,
- Fluctuation symmetries for work and heat Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74, (2006)
- Fluctuation theorem and large deviation function for a solvable model of a molecular motor ,
- Fluctuation theorem applied to F1-ATPase Physical Review Letters 104, (2010)
- Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer AIP Conference Proceedings 1566, 261-262 (2013)
- Fluctuation theorem for a single enzym or molecular motor Europhysics Letters 70, 36-41 (2005)
- Fluctuation theorem for arbitrary open quantum systems Physical Review Letters 102, (2009)
- Fluctuation theorem for birth-death or chemical master equations with time-dependent rates Journal of Physics A: Mathematical and General 37, (2004)
- Fluctuation theorem for currents and Schnakenberg network theory Journal of Statistical Physics 127, 107-131 (2007)
- Fluctuation theorem for nonequilibrium reactions Journal of Chemical Physics 120, 8898-8905 (2004)
- Fluctuation theorem for partially masked nonequilibrium dynamics Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 91, (2015)
- Fluctuation theorem for stochastic dynamics ,
- Fluctuation theorem for stochastic systems. ,
- Fluctuation theorem for the flashing ratchet model of molecular motors Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 80, (2009)
- Fluctuation theorem for transport in mesoscopic systems Journal of Statistical Mechanics: Theory and Experiment , (2006)
- Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics Physical Review Letters 109, (2012)
- Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74, (2006)
- Fluctuation theorems for a molecular refrigerator Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 75, (2007)
- Fluctuation theorems for an asymmetric rotor in a granular gas Physical Review Letters 108, (2012)
- Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains Journal of Statistical Physics 137, 165-188 (2009)
- Fluctuation theorems for harmonic oscillators ,
- Fluctuation theorems for non-linear generalized Langevin systems Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Fluctuation theorems for quantum master equations Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73, (2006)
- Fluctuation theorems for quantum processes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 88, (2013)
- Fluctuation theorems for stochastic dynamics Journal of Statistical Mechanics: Theory and Experiment , (2007)
- Fluctuation theorems in the presence of information gain and feedback Journal of Physics A: Mathematical and Theoretical 45, (2012)
- Fluctuation theorems: Work is not an observable Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 75, (2007)
- Fluctuation-dissipation relations for Markov processes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 72, (2005)
- Fluctuation-dissipation relations in driven dissipative systems Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 73, (2006)
- Fluctuation-dissipation theorem in nonequilibrium steady states ,
- Fluctuation-dissipation theorems and entropy production in relaxational systems Physical Review Letters 79, 2168-2171 (1997)
- Fluctuation-preserving coarse graining for biochemical systems Physical Review Letters 108, (2012)
- Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap Physical Review Letters 92, (2004)
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- Fluctuations and response in a non-equilibrium micron-sized system Journal of Statistical Mechanics: Theory and Experiment 2011, (2011)
- Fluctuations of energy flux in a simple dissipative out-of-equilibrium system Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 79, (2009)
- Fluctuations of internal energy flow in a vibrated granular gas Physical Review Letters 95, (2005)
- Fluctuations of the total entropy production in stochastic systems EPL 82, (2008)
- Fluidized granular medium as an instance of the fluctuation theorem Physical Review Letters 92, (2004)
- Fly photoreceptors demonstrate energy-information trade-offs in neural coding PLoS Biology 5, 828-840 (2007)
- Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells Science 278, 463-467 (1997)
- Forward flux sampling for rare event simulations Journal of Physics Condensed Matter 21, (2009)
- Founding Cryptography on Oblivious Transfer ,
- Free Energy and Dendritic Self-Organization ,
- Free energy calculation from steered molecular dynamics simulations using Jarzynski’s equality ,
- Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality Journal of Chemical Physics 125, (2006)
- Free energy of membrane protein unfolding derived from single-molecule force measurements ,
- Free energy profiles from single-molecule pulling experiments ,
- Free energy reconstruction from nonequilibrium single-molecule pulling experiments. ,
- Free energy surfaces from single-molecule force spectroscopy ,
- Free energy transduction in a chemical motor model Journal of Theoretical Biology 228, 467-476 (2004)
- Free-energy reconstruction from experiments performed under different biasing programs Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74, (2006)
- From Grid Cells to Place Cells: A Mathematical Model ,
- From logarithmic advice to single-bit advice Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6650 LNCS, 109-113 (2011)
- Full distance-resolved folding energy landscape of one single protein molecule ,
- Fully parallelized multi prover protocols for NEXP-time ,
- Functional and molecular differences between voltage-gated K+ channels of fast-spiking interneurons and pyramidal neurons of rat hippocampus. ,
- Functional asymmetries in ON and OFF ganglion cells of primate retina ,
- Functional brain network efficiency predicts intelligence Human Brain Mapping 33, 1393-1406 (2012)
- Functional brain networks develop from a "local to distributed" organization PLoS Computational Biology 5, (2009)
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- Fundamental Costs in the Production and Destruction of Persistent Polymer Copies Physical Review Letters 118, (2017)
- Fundamental aspects of protein - Protein association kinetics Chemical Reviews 109, 839-860 (2009)
- Fundamental limits on sensing chemical concentrations with linear biochemical networks Physical Review Letters 109, (2012)
- Fuzzy Memoization for Floating-Point Multimedia Applications IEEE Transactions on Computers 54, 922-927 (2005)
- GABAergic Regulation of Cerebral Microvascular Tone in the Rat ,
- Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications Journal of Statistical Physics 143, 11-32 (2011)
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- Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity PLoS Computational Biology 2, 1561-1567 (2006)
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- Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 81, (2010)
- Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 74, (2006)
- Generalized Jarzynski equality under nonequilibrium feedback control Physical Review Letters 104, (2010)
- Generalized detailed fluctuation theorem under nonequilibrium feedback control Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 82, (2010)
- Generalized einstein or green-kubo relations for active biomolecular transport Physical Review Letters 104, (2010)
- Generalized fluctuation-dissipation theorem for steady-state systems Physical Review Letters 103, (2009)
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- Genetic Conflicts in Human Pregnancy ,
- Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection ,
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- Inexact Preconditioned Conjugate Gradient Method with Inner-Outer Iteration ,
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- Information Theory, Inference and Learning Algorithms ,
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