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Thermodynamics of Computation

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Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences, Entropy production for mechanically or chemically driven biomolecules, Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics, Entropy production in full phase space for continuous stochastic dynamics, Entropy production in the nonequilibrium steady states of interacting many-body systems, Entropy production of a bound nonequilibrium interface, Entropy production of cyclic population dynamics, Entropy production theorems and some consequences, Entropy roduction and Coarse-Graining in Markov Processes, Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature, Environment-Assisted Invariance, Entanglement, and Probabilities in Quantum Physics, Enzyme-free nucleic acid dynamical systems, Enzyme-free nucleic acid logic circuits, Eon: A Language and Runtime System for Perpetual Systems, Epigenetic regulation by long noncoding RNAs., Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier, Epigenetics in alternative pre-mRNA splicing, Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale, Equality Connecting Energy Dissipation with a Violation of the Fluctuation-Response Relation, Equation of state in a small system: Violation of an assumption of Maxwell's demon, Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach, Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality, Equilibrium microstates which generate second law violating steady states, Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)), Erratum: Nonequilibrium fluctuations, fluctuation theorems, and counting statistics in quantum systems, Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics), Escorted free energy simulations, Escorted free energy simulations: Improving convergence by reducing dissipation, Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models, Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments, Ethernet: distributed packet switching for local computer networks, Eukaryotic organisms in Proterozoic oceans, Eulerian and lagrangian pictures of non-equilibrium diffusions, Evaluating sums over the Matsubara frequencies, Every Prime Has a Succinct Certificate, Evidence based psychotherapy : special case or special pleading?, Evidence for early life in Earth's oldest hydrothermal vent precipitates, Evolution of Time Coding Systems, Evolution of human growth spurts., Evolution of the brain and intelligence, Evolutionary tradeoffs in cellular composition across diverse bacteria, Evolving Coordinated Behavior by Maximizing Information Structure, Evolving Patches for Software Repair, Exact Solution for the Optimal Neuronal Layout Problem, Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator, Exact stochastic simulation of coupled chemical reactions, Exactly solvable model for driven dissipative systems, Exciton-polariton Bose-Einstein condensation, Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond, Expanders, randomness, or time versus space: Extended abstract, Experience and Activity-Dependent Maturation of Perisomatic GABAergic Innervation in Primary Visual Cortex during a Postnatal Critical Period, Experience-dependent rescaling of entorhinal grids, Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State, Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states, Experimental and Theoretical Approaches to Conscious Processing, Experimental demonstration of a latch in clocked quantum-dot cellular automata, Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality, Experimental demonstration of violations of the second law of thermodynamics for small systems and short time scales, Experimental implementation of a nonthermalizing quantum thermometer, Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon, Experimental study of the fluctuation theorem in a nonequilibrium steady state, Experimental test of Hatano and Sasa's nonequilibrium steady-state equality, Experimental test of environment-assisted invariance, Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows, Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates, Experimental test of the quantum Jarzynski equality with a trapped-ion system, Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements, Experimental verification of Landauer's principle in erasure of nanomagnetic memory bits, Experimental verification of Landauer's principle linking information and thermodynamics, Experiments in Stochastic Thermodynamics: Short History and Perspectives, Explicit Constructions of Concentrators, Exploiting Soft Computing for Increased Fault Tolerance, Exploiting correlation in stochastic circuit design, Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limit, Exponential growth by cross-catalytic cleavage of deoxyribozymogens., Extended fluctuation-dissipation theorem for soft matter in stationary flow, Extended heat-fluctuation theorems for a system with deterministic and stochastic forces, Extension of the fluctuation theorem, Extinction in neutrally stable stochastic Lotka-Volterra models, Extracting work from a single heat bath through feedback, Extracting work from a single heat bath via vanishing quantum coherence, Extractors and pseudorandom generators, Extraordinary neoteny of synaptic spines in the human prefrontal cortex, Facilitated target location in biological systems, Factor graphs and the sum-product algorithm, Factoring numbers in O(logn) arithmetic steps, Failure of the work-hamiltonian connection for free-energy calculations, Far-from-equilibrium measurements of thermodynamic length, Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera, Fast computation by population protocols with a leader, Fast reconfiguration of high-frequency brain networks in response to surprising changes in auditory input, Fast signals and slow marks: the dynamics of histone modifications, Fast-growth thermodynamic integration: Error and efficiency analysis, Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees, Fat synthesis in adipose tissue. An examination of stoichiometric constraints, Fault Tolerant Quantum Computation, Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain, Feedback control in a collective flashing ratchet, Feedforward Inhibition of Projection Neurons by Fast-Spiking GABA Interneurons in the Rat Striatum In Vivo, Feynman's ratchet and pawl: an exactly solvable model, Feynman's ratchet optimization: Maximum power and maximum efficiency regimes, Fifty years of the VSEPR model, Finite Automata and Their Decision Problems, Finite time thermodynamic optimization or entropy generation minimization of energy systems, Finite-time erasing of information stored in fermionic bits, Finite-time thermodynamics for a single-level quantum dot, Fitness Distance Correlation as a Measure of Problem Difficulty for Genetic Algorithms, Fitness flux and ubiquity of adaptive evolution, Flaked stones and old bones: Biological and cultural evolution at the dawn of technology, Flight of the FINCH through the java wilderness, Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models, Fluctuation Theorems, Fluctuation and dissipation in liquid-crystal electroconvection, Fluctuation dissipation relations far from equilibrium, Fluctuation ratios in the absence of microscopic time reversibility, Fluctuation relation and heterogeneous superdiffusion in glassy transport, Fluctuation relations and coarse-graining, Fluctuation relations and rare realizations of transport observables, Fluctuation relations for a driven Brownian particle, Fluctuation relations for current components in mesoscopic electric circuits, Fluctuation relations for molecular motors, Fluctuation symmetries for work and heat, Fluctuation theorem and large deviation function for a solvable model of a molecular motor, Fluctuation theorem applied to F1-ATPase, Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer, Fluctuation theorem for a single enzym or molecular motor, Fluctuation theorem for arbitrary open quantum systems, Fluctuation theorem for birth-death or chemical master equations with time-dependent rates, Fluctuation theorem for currents and Schnakenberg network theory, Fluctuation theorem for nonequilibrium reactions, Fluctuation theorem for partially masked nonequilibrium dynamics, Fluctuation theorem for stochastic dynamics, Fluctuation theorem for stochastic systems., Fluctuation theorem for the flashing ratchet model of molecular motors, Fluctuation theorem for transport in mesoscopic systems, Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics, Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors, Fluctuation theorems for a molecular refrigerator, Fluctuation theorems for an asymmetric rotor in a granular gas, Fluctuation theorems for entropy production and heat dissipation in periodically driven Markov chains, Fluctuation theorems for harmonic oscillators, Fluctuation theorems for non-linear generalized Langevin systems, Fluctuation theorems for quantum master equations, Fluctuation theorems for quantum processes, Fluctuation theorems for stochastic dynamics, Fluctuation theorems in the presence of information gain and feedback, Fluctuation theorems: Work is not an observable, Fluctuation-dissipation relations for Markov processes, Fluctuation-dissipation relations in driven dissipative systems, Fluctuation-dissipation theorem in nonequilibrium steady states, Fluctuation-dissipation theorems and entropy production in relaxational systems, Fluctuation-preserving coarse graining for biochemical systems, Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap, Fluctuations and irreversible processes, Fluctuations and response in a non-equilibrium micron-sized system, Fluctuations of energy flux in a simple dissipative out-of-equilibrium system, Fluctuations of internal energy flow in a vibrated granular gas, Fluctuations of the total entropy production in stochastic systems, Fluidized granular medium as an instance of the fluctuation theorem, Fly photoreceptors demonstrate energy-information trade-offs in neural coding, Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells, Forward flux sampling for rare event simulations, Founding Cryptography on Oblivious Transfer, Free Energy and Dendritic Self-Organization, Free energy calculation from steered molecular dynamics simulations using Jarzynski’s equality, Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality, Free energy of membrane protein unfolding derived from single-molecule force measurements, Free energy profiles from single-molecule pulling experiments, Free energy reconstruction from nonequilibrium single-molecule pulling experiments., Free energy surfaces from single-molecule force spectroscopy, Free energy transduction in a chemical motor model, Free-energy reconstruction from experiments performed under different biasing programs, From Grid Cells to Place Cells: A Mathematical Model, From logarithmic advice to single-bit advice, Full distance-resolved folding energy landscape of one single protein molecule, Fully parallelized multi prover protocols for NEXP-time, Functional and molecular differences between voltage-gated K+ channels of fast-spiking interneurons and pyramidal neurons of rat hippocampus., Functional asymmetries in ON and OFF ganglion cells of primate retina, Functional brain network efficiency predicts intelligence, Functional brain networks develop from a "local to distributed" organization, Functional connectivity and brain networks in schizophrenia, Functional connectivity between anatomically unconnected areas is shaped by collective network-level effects in the macaque cortex, Functional nucleic acid sensors, Functional organization of rat olfactory bulb analysed by the 2‐deoxyglucose method, Fundamental Costs in the Production and Destruction of Persistent Polymer Copies, Fundamental aspects of protein - Protein association kinetics, Fundamental limits on sensing chemical concentrations with linear biochemical networks, Fuzzy Memoization for Floating-Point Multimedia Applications, GABAergic Regulation of Cerebral Microvascular Tone in the Rat, Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications, Games against nature, Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivity, General mass action kinetics, General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening, General theory of thermal fluctuations in nonlinear systems, Generalised Einstein relation for hot Brownian motion, Generalization of the second law for a nonequilibrium initial state, Generalization of the second law for a transition between nonequilibrium states, Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility, Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes, Generalized Jarzynski equality under nonequilibrium feedback control, Generalized detailed fluctuation theorem under nonequilibrium feedback control, Generalized einstein or green-kubo relations for active biomolecular transport, Generalized fluctuation-dissipation theorem for steady-state systems, Generalized integral fluctuation theorem for diffusion processes, Generalizing Landauer's principle, Generating Binary Sequences for Stochastic Computing, Generating function formula of heat transfer in harmonic networks, Genetic Algorithms, Tournament Selection, and the Effects of Noise, Genetic Conflicts in Human Pregnancy, Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection, Genetic influences on cost-efficient organization of human cortical functional networks, Genetic networks: Small numbers of big molecules, Genetic programming as a means for programming computers by natural selection, Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation, Genome evolution and adaptation in a long-term experiment with Escherichia coli, Genome sizes and the benford distribution, Genome-wide patterns of histone modifications in yeast, Geometric effects on complex network structure in the cortex, Geometrical expression of excess entropy production, Giant acceleration of free diffusion by use of tilted periodic potentials, Global and local thermometry schemes in coupled quantum systems, Global and regional brain metabolic scaling and its functional consequences, Global integration of self-similar modules in functional brain networks, Global optimization of cerebral cortex layout, Glucans monomer-exchange dynamics as an open chemical network, Good practices in free-energy calculations, Grandmothering, menopause, and the evolution of human life histories, Grid cells generate an analog error-correcting code for singularly precise neural computation, Growth in Data Center Electricity use 2005 to 2010, Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins, Growth, metabolic partitioning, and the size of microorganisms, Hamiltonian derivations of the generalized Jarzynski equalities under feedback control, Handbook of stochastic methods for physics, chemistry and the natural sciences, Hard examples for resolution, Hardness vs randomness, Heat Release by Controlled Continuous-Time Markov Jump Processes, Heat and work fluctuations for a harmonic oscillator, Heat conduction in a three dimensional anharmonic crystal, Heat distribution function for motion in a general potential at low temperature, Heat engine driven by purely quantum information, Heat flow in chains driven by thermal noise, Heat fluctuations in a nonequilibrium bath, Heat generation required by information erasure, Heat transport in low-dimensional systems, Helical logic, Heterochromatin formation involves changes in histone modifications over multiple cell generations, Heterogeneity and Efficiency in the Brain, Hierarchical modularity in human brain functional networks., Hierarchical organization of human cortical networks in health and schizophrenia., Hierarchies of memory limited computations, Hierarchy and dynamics of neural networks., High nucleosome occupancy is encoded at human regulatory sequences, High-energy behavior in quantum field theory, High-precision test of Landauer's principle in a feedback trap, Higher coordination with less control-a result of information maximization in the sensorimotor loop, Histone H3 tail clipping regulates gene expression, Histone Segregation on Replicating Chromatinâ€, Histone Segregation on Replicating Chromatin†, Histone acetylation as an epigenetic determinant of long-term transcriptional competence, Histone marks: repairing DNA breaks within the context of chromatin, Histone modifications at human enhancers reflect global cell-type-specific gene expression, Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli, Holevo's bound from a general quantum fluctuation theorem, Holographic Second Laws of Black Hole Thermodynamics, Housekeeping entropy in continuous stochastic dynamics with odd-parity variables, How Close Are We to Understanding V1?, How Far is Complex Balancing from Detailed Balancing?, How Much the Eye Tells the Brain, How much non-coding DNA do eukaryotes require?, How the Optic Nerve Allocates Space, Energy Capacity, and Information, How the nature of an observation affects single-trajectory entropies, How to recycle random bits, Human brain networks in health and disease, Human cytochrome c oxidase: structure, function, and deficiency, Human cytochrome oxidase deficiency., Human neoteny revisited: The case of synaptic plasticity, Humans are not cooperative breeders but practice biocultural reproduction, Hydrodynamics and the fluctuation theorem, Identification and classification of hubs in brain networks, Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification, Identification of basolateral amygdala projection cells and interneurons using extracellular recordings., Image quality assessment: From error visibility to structural similarity, Imitating chemical motors with optimal information motors, Impact of synaptic unreliability on the information transmitted by spiking neurons., Impaired small-world ef ciency in structural cortical networks in multiple sclerosis associated with white matter lesion load, Imprecise Computations, Improved decoding of reed-solomon and algebraic-geometry codes, Improved thermometry of low-temperature quantum systems by a ring-structure probe, Improving fast-switching free energy estimates by dynamical freezing, Improving free-energy estimates from unidirectional work measurements: Theory and experiment, In silico evolution of diauxic growth, In vivo nuclear magnetic resonance spectroscopy studies of the relationship between the glutamate--glutamine neurotransmitter cycle and functional neuroenergetics, In vivo whole-cell recording of odor-evoked synaptic transmission in the rat olfactory bulb., Inapproximability of Combinatorial Optimization Problems, Incomplete current fluctuation theorems for a four-terminal model, Increased accuracy of ligand sensing by receptor diffusion on cell surface, Increasing utilization in modern warehouse-scale computers using Bubble-Up, Incremental growth tables: Supplementary to previously published charts, Inequalities for Non-equilibrium Fluctuations of Work, Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states, Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit, Inertial effects in nonequilibrium work fluctuations by a path integral approach, Inexact Preconditioned Conjugate Gradient Method with Inner-Outer Iteration, Influence of combinatorial histone modifications on antibody and effector protein recognition, Information Processing and the Second Law of Thermodynamics: An Inclusive, Hamiltonian Approach, Information Theory, Inference and Learning Algorithms, Information Theory: A Tutorial Introduction, Information Thermodynamics: Maxwell's Demon in Nonequilibrium Dynamics, Information and flux in a feedback controlled Brownian ratchet, Information and maximum power in a feedback controlled Brownian ratchet, Information integration: Its relevance to brain function and consciousness, Information measures for conscious experience, Information processing and the second law of thermodynamics: An inclusive, Hamiltonian approach, Information processing and thermodynamic entropy, Information theory in molecular biology, Information theory, evolution, and the origin of life, Information theory: a tutorial introduction (book), Information thermodynamics of near-equilibrium computation, Information thermodynamics on causal networks, Information, Physics, and Computation, Information-theoretic approach to the study of control systems, Information-theoretic lower bound on energy cost of stochastic computation, Information-theoretic versus thermodynamic entropy production in autonomous sensory networks, Inhibition and Brain Work, Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine, Inhibition of the olfactory cyclic nucleotide gated ion channel by intracellular calcium., Inhibitory postsynaptic potentials carry synchronized frequency information in active cortical networks, Injected power and entropy flow in a heated granular gas, Injected power fluctuations in Langevin equation, Innovation in gene regulation: The case of chromatin computation, Insect olfactory receptors., Instrumentation applications of multibit random-data representation, Insulin Resistance in Children: Consensus, Perspective, and Future Directions, Integral fluctuation theorem for the housekeeping heat, Integral quantum fluctuation theorems under measurement and feedback control, Integrated information in discrete dynamical systems: Motivation and theoretical framework, Integrated information increases with fitness in the evolution of animats, Integration of quanta in cerebellar granule cells during sensory processing, Intensive thermodynamic parameters in nonequilibrium systems, Interactome Networks and Human Disease, Interglomerular Center-Surround Inhibition Shapes Odorant-Evoked Input to the Mouse Olfactory Bulb In Vivo, Intermittent Transcription Dynamics for the Rapid Production of Long Transcripts of High Fidelity, Interpreting hippocampal function as recoding and forecasting, Interpreting the BOLD Signal, Intraglomerular inhibition: Signaling mechanisms of an olfactory microcircuit, Intrinsic Fluctuations within Cortical Systems Account for Intertrial Variability in Human Behavior, Introduction to Automata Theory, Languages, and Computation, Introduction to Nonequilibrium Quantum Field Theory, Introduction to the Theory of Computation, Invariant quantities in shear flow, Invariant visual representation by single neurons in the human brain, Invertible cellular automata: A review, Invisibility in non-Hermitian tight-binding lattices, Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator, Irreversibility and Heat Generation in the Computing Process, Irreversibility and the second law of thermodynamics at the nanoscale, Irreversibility-to-reversibility crossover in transient response of an optically trapped particle, Irreversible dynamics of a massive intruder in dense granular fluids, Irreversible effects of memory, Is adult stem cell aging driven by conflicting modes of chromatin remodeling?, Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence, Iterative decoding using stochastic computation, Jarzynski equality for quantum stochastic maps, Jarzynski equality for the Jepsen gas, Jarzynski equality modified in the linear feedback system, Jarzynski equation for a simple quantum system: Comparing two definitions of work, Ketamine and Xylazine Depress Sensory-Evoked Parallel Fiber and Climbing Fiber Responses, Kinetic Characterization of Heat Bath and the Energetics of Thermal Ratchet Models, Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity, Kinetic amplification of enzyme discrimination, Kinetic versus energetic discrimination in biological copying, Kinetics and thermodynamics of amyloid formation from direct measurements of fluctuations in fibril mass, Kinetics of protein-protein association explained by Brownian dynamics computer simulation., Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation, Lag inequality for birth-death processes with time-dependent rates, Langevin Equation and Thermodynamics, Large Deviation Bounds for Markov Chains, Large deviation function for entropy production in driven one-dimensional systems, Large deviations of heat flow in harmonic chains, Las Vegas is better than determinism in VLSI and distributed computing, Laser cooling of atoms, Lattice Based Cryptography, Leaderless deterministic chemical reaction networks, Learning decision trees using the Fourier spectrum, Learning to learn by gradient descent by gradient descent, Length of time's arrow, Less haste, less waste: On recycling and its limits in strand displacement systems, Leveraging program equivalence for adaptive program repair: Models and first results, Life history costs and benefits of encephalization: a comparative test using data from long-term studies of primates in the wild, Life in the slow lane revisited: Ontogenetic separation between chimpanzees and humans, Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations, Light adaptation in retinal rods of the rabbit and two other nonprimate mammals., Light-powered molecular-scale-machines, Limited by sensing - A minimal stochastic model of the lag-phase during diauxic growth, Limits of sensing temporal concentration changes by single cells, Local Dendritic Activity Sets Release Probability at Hippocampal Synapses, Local potential connectivity in cat primary visual cortex, Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulation, Localization transitions in non-hermitian quantum mechanics, Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold, Logical Reversibility of Computation, Logical computation on stochastic bit streams with linear finite-state machines, Logical reversibility, Longitudinal gradients in periarteriolar oxygen tension. A possible mechanism for the participation of oxygen in local regulation of blood flow., Low Power Microelectronics: Retrospect and Prospect, Low-Power Digital Systems Based on Adiabatic-Switching Principles, Low-density parity-check codes, Low-power digital signal processing using approximate adders, Lower bound on the precision of transcriptional regulation and why facilitated diffusion can reduce noise in gene expression, Lower bounds for polynomial calculus: Non-binomial case, Lower bounds for resolution and cutting plane proofs and monotone computations, Lower bounds on dissipation upon coarse graining, Lower bounds on probabilistic linear decision trees, Lower bounds on the size of bounded depth circuits over a complete basis with logical addition, MAPS IN THE BRAIN: What Can We Learn from Them?, Macromolecular crowding: An important but neglected aspect of the intracellular environment, Macroscopic constraints for the minimum entropy production principle, Macroscopic expression connecting the rate of energy dissipation with the violation of the fluctuation response relation, Maintaining accuracy at the expense of speed: Stimulus similarity defines odor discrimination time in mice, Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information, Making molecular machines work, Mammalian MAP kinase signalling cascades, Managing performance vs. accuracy trade-offs with loop perforation, Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression, Mapping information flow in sensorimotor networks, Mapping out-of-equilibrium into equilibrium in one-dimensional transport models, Mapping the structural core of human cerebral cortex, Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye, Matching is as easy as matrix inversion, Mathematical and Computational Methods for Studying Energy Transduction in Protein Motors, Maturational changes in cerebral function in infants determined by 18FDG positron emission tomography., Max Horn SAT and the minimum cut problem in directed hypergraphs, Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete, Maximum likelihood and the single receptor, Maximum work extraction and implementation costs for nonequilibrium Maxwell's demons, Maxwell's demon and quantum-dot cellular automata, Maxwell's demon and the entropy cost of information, Maxwell's demon assisted thermodynamic cycle in superconducting quantum circuits, Maxwell's demon in biochemical signal transduction with feedback loop, Maxwell's refrigerator: An exactly solvable model, Measure of the violation of the detailed balance criterion: A possible definition of a "distance" from equilibrium, Measurement of 'true' glucose production rates in infancy and childhood with 6,6-dideuteroglucose, Measurement of cerebral glucose metabolic rates in the anesthetized rat by dynamic scanning with 18F-FDG, the ATLAS small animal PET scanner, and arterial blood sampling., Measurement of damping and temperature: Precision bounds in Gaussian dissipative channels, Measurement of stochastic entropy production, Measurement of work in single-molecule pulling experiments, Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics, Measuring energy, estimating Hamiltonians, and the time-energy uncertainty relation, Measuring information integration, Measuring the fluctuation-dissipation ratio in glassy systems with no perturbing field, Mechanical Processes in Biochemistry, Mechanics of Nonequilibrium Liquids 2nd edn, Mechanisms for the inheritance of chromatin states, Mechanisms of voltage-gated ion channel regulation: from gene expression to localization., Mej´ıa-Monasterio C 2007 Fluctuations in nonequilibrium statistical mechanics: models, Memory erasure in small systems, Memory improves precision of cell sensing in fluctuating environments, Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation, Metabolic Rate and Organ Size During Growth From Infancy To Maturity and During Late Gestation and Early Infancy, Metabolic constraint imposes tradeoff between body size and number of brain neurons in human evolution, Metabolic correlates of hominid brain evolution, Metabolically efficient information processing., Methods for quantifying the informational structure of sensory and motor data, Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins, Microbial life under extreme energy limitation, Microcircuitry of the dark-adapted cat retina: functional architecture of the rod-cone network., Microrheology and the fluctuation theorem in dense colloids, Microscopic analysis of Clausius-Duhem processes, Microscopic heat from the energetics of stochastic phenomena, Microstructure of a spatial map in the entorhinal cortex, Minimal energy cost for thermodynamic information processing: Measurement and information erasure, Minimal energy requirements in communication, Minimal model for Brownian vortexes, Minimization of functions having Lipschitz-continuous first partial derivatives, Minimum Description Length Induction , Bayesianism , and Kolmogorov Complexity 1 Introduction, Mobility and diffusion of a tagged particle in a driven colloidal suspension, Modeling Maxwell's demon with a microcanonical Szilard engine, Modeling an efficient Brownian heat engine, Modeling molecular motors, Modeling readability to improve unit tests, Modeling the Internet's large-scale topology, Modeling the chemotactic response of Escherichia coli to time-varying stimuli, Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin, Modeling the impact of lesions in the human brain, Modelling amorphous computations with transcription networks, Modelling dynamical processes in complex socio-technical systems, Modelling the development of cortical systems networks, Modelling, simulating and verifying Turing-powerful strand displacement systems, Models of Computation: Exploring the Power of Computing, Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex, Modified Fluctuation-dissipation theorem for non-equilibrium steady-states and applications to molecular motors, Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain, Modular and hierarchically modular organization of brain networks, Modular verification of chemical reaction network encodings via serializability analysis, Modularity and community structure in networks, Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate, Molecular Structure and Physiological Function of Chloride Channels, Molecular combustion motors, Molecular computation of solutions to combinatorial problems