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Thermodynamics of Computation

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U
Untangling Complex Systems: A Grand Challenge for Science +
Book  +
P
Physics of Self-Organization and Evolution +
book  +
I
Information, Physics, and Computation +
book  +
A
An Introduction to Kolmogorov Complexity and Its Applications +
book  +
I
Information theory: a tutorial introduction (book) +
book  +
E
Elements of Information Theory +
book  +
T
The Datacenter as a Computer +
book  +
C
Compendium of the Foundations of Classical Statistical Physics +
book_section  +
B
Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome +
book_section  +
O
Olfactory Bulb +
book_section  +
T
The Phi-Bot: A robot controlled by a slime mould +
book_section  +
A
Amorphous computing +
book_section  +
An introduction to population protocols +
book_section  +
R
Reducibility among combinatorial problems +
book_section  +
I
Information Thermodynamics: Maxwell's Demon in Nonequilibrium Dynamics +
book_section  +
R
Retina +
book_section  +
T
The Taxonomy Project +
book_section  +
Q
Quantum entropy production as a measure of irreversibility +
conference_proceedings  +
R
Recent Development in Efficient Adiabatic Logic Circuits and Power Analysis with CMOS Logic +
conference_proceedings  +
E
Entropy production for mechanically or chemically driven biomolecules +
conference_proceedings  +
Experimental test of the Gallavotti-Cohen fluctuation theorem in turbulent flows +
conference_proceedings  +
F
Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer +
conference_proceedings  +
H
Hamiltonian derivations of the generalized Jarzynski equalities under feedback control +
conference_proceedings  +
A
Application-level correctness and its impact on fault tolerance +
conference_proceedings  +
S
Seflab: A lab for measuring software energy footprints +
conference_proceedings  +
A
A spectral transform approach to stochastic circuits +
conference_proceedings  +
T
Transmission gate-based approximate adders for inexact computing +
conference_proceedings  +
Tomographic testing and validation of probabilistic circuits +
conference_proceedings  +
A
Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits +
conference_proceedings  +
S
Stochastic arithmetic implementations of neural networks with in situ learning +
conference_proceedings  +
Stochastic functions using sequential logic +
conference_proceedings  +
O
Optimizing Google's warehouse scale computers: The NUMA experience +
conference_proceedings  +
C
Cube v4: From performance report explorer to performance analysis tool +
conference_proceedings  +
A
A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic +
conference_proceedings  +
M
Modelling, simulating and verifying Turing-powerful strand displacement systems +
conference_proceedings  +
D
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome +
conference_proceedings  +
F
Faster algorithms for subgraph isomorphism of k-Connected partial k-Trees +
conference_proceedings  +
C
Computation in networks of passively mobile finite-state sensors +
conference_proceedings  +
A
Asynchronous computation with molecular reactions +
conference_proceedings  +
Analyzing molecular reaction networks: From pathways to chemical organizations +
conference_proceedings  +
T
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1 +
conference_proceedings  +
E
Efficient checking of computations +
conference_proceedings  +
R
Randomness-efficient sampling within NC1 +
conference_proceedings  +
O
On the generation of cryptographically strong pseudo-random sequences +
conference_proceedings  +
C
Correcting errors beyond the Guruswami-Sudan radius in polynomial time +
conference_proceedings  +
S
Size at birth, postnatal growth and risk of obesity +
conference_proceedings  +
N
Neuron-glia metabolic coupling and plasticity +
conference_proceedings  +
S
Second law of thermodynamics with discrete quantum feedback control +
conference_proceedings  +
D
DNA as a universal substrate for chemical kinetics (Extended Abstract) +
conference_proceedings  +
T
The computationally complete ant colony: Global coordination in a system with no hierarchy +
conference_proceedings  +
P
Probabilistic algorithms for verification of polynomial identities +
conference_proceedings  +
N
Novel algorithms for fast statistical analysis of scaled circuits +
conference_proceedings  +
T
The synthesis of robust polynomial arithmetic with stochastic logic +
conference_proceedings  +
C
Compiler optimization on instruction scheduling for low power +
conference_proceedings  +
A
Approximate computing: An emerging paradigm for energy-efficient design +
conference_proceedings  +
M
Methods for quantifying the informational structure of sensory and motor data +
conference_proceedings  +
E
Exploiting correlation in stochastic circuit design +
conference_proceedings  +
S
Stretching the limits of clock-gating efficiency in server-class processors +
conference_proceedings  +
R
Run-time exploitation of application dynamism for energy-efficient exascale computing (READEX) +
conference_proceedings  +
E
Efficient turing-universal computation with DNA polymers +
conference_proceedings  +
T
Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice +
conference_proceedings  +
L
Leveraging program equivalence for adaptive program repair: Models and first results +
conference_proceedings  +
S
Strand algebras for DNA computing +
conference_proceedings  +
D
Disjointness is hard in the multiparty number-on-the-forehead model +
conference_proceedings  +
U
Unbalanced expanders and randomness extractors from parvaresh-vardy codes +
conference_proceedings  +
O
On the solution to numerical problems using stochastic arithmetic +
conference_proceedings  +
A
A cost/speed/reliability tradeoff to erasing +
conference_proceedings  +
E
Exploiting Soft Computing for Increased Fault Tolerance +
conference_proceedings  +
A
Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic +
conference_proceedings  +
L
Less haste, less waste: On recycling and its limits in strand displacement systems +
conference_proceedings  +
E
Expanders, randomness, or time versus space: Extended abstract +
conference_proceedings  +
R
Resolution lower bounds for the weak functional pigeonhole principle +
conference_proceedings  +
N
Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport +
generic  +
W
Work and heat probability distributions in out-of-equilibrium systems +
generic  +
T
Thermodynamics of information +
generic  +
E
Energy as a constraint on the coding and processing of sensory information +
generic  +
T
Thermodynamics of Computational Copying in Biochemical Systems +
generic  +
E
Energy use constrains brain information processing +
generic  +
C
Comparison of far-from-equilibrium work relations +
generic  +
B
Brownian motors: Noisy transport far from equilibrium +
generic  +
C
Closed-loop control strategy with improved current for a flashing ratchet +
generic  +
S
Synthetic molecular motors and mechanical machines +
generic  +
B
Biomolecules under mechanical force +
generic  +
O
Optimal Process Paths for Endoreversible Systems +
generic  +
V
Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence +
generic  +
Q
Quantum speed limits-primer, perspectives, and potential future directions +
generic  +
R
Role of Astrocytes in Matching Blood Flow to Neuronal Activity +
generic  +
T
The magnificent compromise: cortical field evolution in mammals. +
generic  +
The neural basis of functional brain imaging signals +
generic  +
A
Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance +
generic  +
T
The effects of spatial constraints on the evolution of weighted complex networks +
generic  +
The sniff as a unit of olfactory processing +
generic  +
M
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye +
generic  +
T
The brain's default network: Anatomy, function, and relevance to disease +
generic  +
A
Alternative splicing in the nervous system: An emerging source of diversity and regulation +
generic  +
E
Experimental and Theoretical Approaches to Conscious Processing +
generic  +
T
The human connectome: A structural description of the human brain +
generic  +
A
A simple coding procedure enhances a neuron’s information capacity +
generic  +
O
Organization, development and function of complex brain networks +
generic  +
C
CNS energy metabolism as related to function +
generic  +
R
Receptive fields and functional architecture in the retina +
generic  +
C
Could information theory provide an ecological theory of sensory processing? +
generic  +
N
Neuroenergetics and the kinetic design of excitatory synapses +
generic  +
R
Rapid Neocortical Dynamics: Cellular and Network Mechanisms +
generic  +
D
Determining cortical landscapes +
generic  +
T
The thermodynamics of computation-a review +
generic  +
R
RAS oncogenes: Weaving a tumorigenic web +
generic  +
T
Transitions from Nonliving to Living Matter +
generic  +
M
Mammalian MAP kinase signalling cascades +
generic  +
O
One-component systems dominate signal transduction in prokaryotes +
generic  +
T
The large deviation approach to statistical mechanics +
generic  +
C
Consciousness as integrated information: A provisional manifesto +
generic  +
P
Propagation of histone marks and epigenetic memory during normal and interrupted DNA replication +
generic  +
C
Chromatin structure and the inheritance of epigenetic information +
generic  +
T
The superfamily of heme-copper respiratory oxidases +
generic  +
I
Information theory in molecular biology +
generic  +
T
The hidden simplicity of biology +
generic  +
The neural correlates of consciousness: An update +
generic  +
P
Parallel mechanisms of epigenetic reprogramming in the germline +
generic  +
E
Epigenetics in alternative pre-mRNA splicing +
generic  +
R
Regulation of chromatin structure by long noncoding RNAs: Focus on natural antisense transcripts +
generic  +
G
Genome-wide patterns of histone modifications in yeast +
generic  +
C
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host +
generic  +
Y
Yeast heterochromatin: Regulation of its assembly and inheritance by histones +
generic  +
M
Mechanisms for the inheritance of chromatin states +
generic  +
D
Digital and analog gene circuits for biotechnology +
generic  +
S
Synthetic biology: It's an analog world +
generic  +
D
Derandomizing polynomial identity tests means proving circuit lower bounds +
generic  +
B
Brownian motion: A paradigm of soft matter and biological physics +
generic  +
T
The stochastic pump effect and geometric phases in dissipative and stochastic systems +
generic  +
E
Erratum: Quantum fluctuation relations: Foundations and applications (Reviews of Modern Physics) +
generic  +
C
Communication in neuronal networks +
generic  +
D
Dental and skeletal growth in early fossil hominins +
generic  +
W
What we can do and what we cannot do with fMRI +
generic  +
A
A tension-based theory of morphogenesis and compact wiring in the central nervous system +
generic  +
M
Modular and hierarchically modular organization of brain networks +
generic  +
C
Channel noise in neurons +
generic  +
S
Schizophrenia, neuroimaging and connectomics +
generic  +
T
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network +
generic  +
A
A systems perspective on early olfactory coding +
generic  +
M
Metabolic correlates of hominid brain evolution +
generic  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
generic  +
W
What can spontaneous fluctuations of the blood oxygenationlevel-dependent signal tell us about psychiatric disorders? +
generic  +
T
The conscious access hypothesis: Origins and recent evidence +
generic  +
The entorhinal grid map is discretized +
generic  +
The selfish brain: Competition for energy resources +
generic  +
I
Inhibition and Brain Work +
generic  +
V
Variability, compensation and homeostasis in neuron and network function +
generic  +
T
The role of glial glutamate transporters in maintaining the independent operation of juvenile mouse cerebellar parallel fibre synapses +
generic  +
E
Energetic basis of brain activity: Implications for neuroimaging +
generic  +
R
RELATION BETWEEN PHYSIOLOGICAL FUNCTION AND ENERGY METABOLISM IN THE CENTRAL NERVOUS SYSTEM +
generic  +
H
Humans are not cooperative breeders but practice biocultural reproduction +
generic  +
Human neoteny revisited: The case of synaptic plasticity +
generic  +
C
Consensus paper: The cerebellum's role in movement and cognition +
generic  +
Component-placement optimization in the brain +
generic  +
S
Summing up the noise in gene networks +
generic  +
B
Bacterial chemoreceptors: high-performance signaling in networked arrays +
generic  +
W
Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity +
generic  +
E
Energy flows in low-entropy complex systems +
generic  +
T
The energy expansions of evolution +
generic  +
L
Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations +
generic  +
U
Ultimate physical limits to computation +
generic  +
S
Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics +
generic  +
F
Facilitated target location in biological systems +
generic  +
M
Microbial life under extreme energy limitation +
generic  +
C
Calcium, the two-faced messenger of olfactory transduction and adaptation +
generic  +
R
Readers of histone modifications +
generic  +
T
Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium +
generic  +
N
Nucleosome positioning and gene regulation: Advances through genomics +
generic  +
T
The second wave of synthetic biology: From modules to systems +
generic  +
O
Operating on chromatin, a colorful language where context matters +
generic  +
T
Thermodynamics of computational copying in biochemical systems +
generic  +
The WUS homeobox-containing (WOX) protein family +
generic  +
R
Resurrecting ancient genes: Experimental analysis of extinct molecules +
generic  +
H
Histone acetylation as an epigenetic determinant of long-term transcriptional competence +
generic  +
C
Combinatorial readout of dual histone modifications by paired chromatin-associated modules +
generic  +
Combinatorial complexity in chromatin structure and function: Revisiting the histone code +
generic  +
M
Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information +
generic  +
P
Performance assessment of multiobjective optimizers: An analysis and review +
generic  +
F
Fast signals and slow marks: the dynamics of histone modifications +
generic  +
P
Pushing the limits of lithography +
generic  +
Perceiving the epigenetic landscape through histone readers +
generic  +
D
Directing reprogramming to pluripotency by transcription factors +
generic  +
C
Covalent modifications of histones during mitosis and meiosis +
generic  +
T
The adjustable nucleosome: An epigenetic signaling module +
generic  +
The chromatin code of fungal secondary metabolite gene clusters +
generic  +
The quiet revolution of numerical weather prediction +
generic  +
S
Statistical mechanics of Monod-Wyman-Changeux (MWC) models +
generic  +
D
Digital genetics: Unravelling the genetic basis of evolution +
generic  +
T
Translating the histone code +
generic  +
N
Network and thermodynamic conditions for a single macroscopic current fluctuation theorem +
generic  +
G
Genetic networks: Small numbers of big molecules +
generic  +
E
Evolution of the brain and intelligence +
generic  +
H
Human brain networks in health and disease +
generic  +
S
Small-world brain networks +
generic  +
T
The structure and function of the homeodomain +
generic  +
F
Fifty years of the VSEPR model +
generic  +
T
The neural code of the retina +
generic  +
The olfactory bulb: Coding and processing of odor molecule information +
generic  +
The fundamental plan of the retina +
generic  +
Q
Quantum mechanics: No more fields +
generic  +
D
Dissipation and noise immunity in computation and communication +
generic  +
M
Macromolecular crowding: An important but neglected aspect of the intracellular environment +
generic  +
F
Fundamental aspects of protein - Protein association kinetics +
generic  +
M
Maxwell's demon and quantum-dot cellular automata +
generic  +
S
Split decision: What happens to nucleosomes during DNA replication? +
generic  +
L
Laser cooling of atoms +
journal  +
R
Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru +
journal  +
S
Stochastic thermodynamics, fluctuation theorems and molecular machines +
journal  +
E
Equilibrium microstates which generate second law violating steady states +
journal  +
T
The mesoscopic dynamics of thermodynamic systems +
journal  +
N
Non-equilibrium work relations +
journal  +
P
Probability of second law violations in shearing steady states +
journal  +
M
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation +
journal  +
P
Path-ensemble averages in systems driven far from equilibrium +
journal  +
I
Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence +
journal  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
journal  +
E
Entropy production along a stochastic trajectory and an integral fluctuation theorem +
journal  +
D
Dynamical ensembles in nonequilibrium statistical mechanics +
journal  +
E
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach +
journal  +
P
Path integrals with generalized Grassmann variables +
journal  +
S
Steady-state thermodynamics of Langevin systems +
journal  +
E
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences +
journal  +
N
Nonequilibrium equality for free energy differences +
journal  +
S
STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis +
journal  +
E
Energy Aware Computing Through Probabilistic Switching: A Study of Limits +
journal  +
T
The Use of Information Theory in Evolutionary Biology +
journal  +
Thermodynamics of natural selection III: Landauer’s principle in computation and chemistry +
journal  +
Thermodynamics of natural selection I: Energy flow and the limits on organization +
journal  +
The energy–speed–accuracy trade-off in sensory adaptation +
journal  +
H
Heterogeneity and Efficiency in the Brain +
journal  +
D
Deterministic Function Computation with Chemical Reaction Network +
journal  +
C
Chemical Reaction Networks for Computing Polynomials +
journal  +
A
Analog Computation by DNA Strand Displacement Circuits +
journal  +
S
Statistical properties of entropy production derived from fluctuation theorems +
journal  +
M
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models +
journal  +
F
Failure of the work-hamiltonian connection for free-energy calculations +
journal  +
S
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis +
journal  +
W
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving +
journal  +
S
Steady state thermodynamics +
journal  +
G
Generalised Einstein relation for hot Brownian motion +
journal  +
N
Nonequilibrium work theorem for a system strongly coupled to a thermal environment +
journal  +
E
Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states +
journal  +
T
Thermodynamic cost of measurements +
journal  +
I
Irreversibility-to-reversibility crossover in transient response of an optically trapped particle +
journal  +
F
Fluctuation relations for a driven Brownian particle +
journal  +
R
Resonances arising from hydrodynamic memory in Brownian motion +
journal  +
B
Bidirectional single-electron counting and the fluctuation theorem +
journal  +
F
Fluctuations of internal energy flow in a vibrated granular gas +
journal  +
W
Work fluctuations in a nematic liquid crystal +
journal  +
S
Stochastic thermodynamics and sustainable efficiency in work production +
journal  +
R
Representation of nonequilibrium steady states in large mechanical systems +
journal  +
F
Fluctuations and response in a non-equilibrium micron-sized system +
journal  +
E
Efficiency of autonomous soft nanomachines at maximum power +
journal  +
Energy conversion by molecular motors coupled to nucleotide hydrolysis +
journal  +
S
Study of stochastic resonance by method of stochastic energetics +
journal  +
G
Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility +
journal  +
E
Efficiency at maximum power: An analytically solvable model for stochastic heat engines +
journal  +
T
Two Refreshing Views of Fluctuation Theorems Through Kinematics Elements and Exponential Martingale +
journal  +
P
Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states +
journal  +
E
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality +
journal  +
F
Fluctuation theorem for a single enzym or molecular motor +
journal  +
N
Nonequilibrium thermodynamics of stochastic systems with odd and even variables +
journal  +
A
Asymptotics of work distributions in nonequilibrium systems +
journal  +
C
Constrained maximal power in small engines +
journal  +
A
A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension +
journal  +
E
Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics +
journal  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem +
journal  +
S
Second law and Landauer principle far from equilibrium +
journal  +
N
Nonexistence of classical diamagnetism and nonequilibrium fluctuation theorems for charged particles on a curved surface +
journal  +
O
Observable dependence of fluctuation-dissipation relations and effective temperatures +
journal  +
R
Rare events and the convergence of exponentially averaged work values +
journal  +
T
The Berry phase and the pump flux in stochastic chemical kinetics +
journal  +
F
Fluctuation-dissipation theorems and entropy production in relaxational systems +
journal  +
P
Power fluctuations in stochastic models of dissipative systems +
journal  +
L
Lower bounds on dissipation upon coarse graining +
journal  +
W
Work fluctuations for a Brownian particle between two thermostats +
journal  +
I
Information and maximum power in a feedback controlled Brownian ratchet +
journal  +
Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit +
journal  +
O
Optimal operation of feedback flashing ratchets +
journal  +
T
Thermopower with broken time-reversal symmetry +
journal  +
I
Inertial effects in nonequilibrium work fluctuations by a path integral approach +
journal  +
G
Good practices in free-energy calculations +
journal  +
R
Role of external flow and frame invariance in stochastic thermodynamics +
journal  +
P
Path integral formulation of general diffusion processes +
journal  +
Path-integral analysis of fluctuation theorems for general Langevin processes +
journal  +
D
Dissipated work in driven harmonic diffusive systems: General solution and application to stretching Rouse polymers +
journal  +
W
Work probability distribution and tossing a biased coin +
journal  +
D
Distribution of work in isothermal nonequilibrium processes +
journal  +
I
Integral fluctuation theorem for the housekeeping heat +
journal  +
C
Comparison of work fluctuation relations +
journal  +
O
On the work - Hamiltonian connection in manipulated systems +
journal  +
E
Entropy production and fluctuation theorems under feedback control: The molecular refrigerator model revisited +
journal  +
F
Fluctuation and dissipation in liquid-crystal electroconvection +
journal  +
Far-from-equilibrium measurements of thermodynamic length +
journal  +
C
Characterizing plastic depinning dynamics with the fluctuation theorem +
journal  +
H
Heat Release by Controlled Continuous-Time Markov Jump Processes +
journal  +
R
Relevance of initial and final conditions for the fluctuation relation in Markov processes +
journal  +
I
Incomplete current fluctuation theorems for a four-terminal model +
journal  +
T
Thermodynamic reversibility in feedback processes +
journal  +
O
Optimal protocols and optimal transport in stochastic thermodynamics +
journal  +
S
Stochastic thermodynamics under coarse graining +
journal  +
E
Equation of state in a small system: Violation of an assumption of Maxwell's demon +
journal  +
A
A field-theoretic approach to non-equilibrium work identities +
journal  +
U
Universal aspects of the chemomechanical coupling for molecular motors +
journal  +
O
Optimized free energies from bidirectional single-molecule force spectroscopy +
journal  +
N
Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces +
journal  +
T
Thermoelectric efficiency at maximum power in a quantum dot +
journal  +
M
Minimal model for Brownian vortexes +
journal  +
I
Invariant quantities in shear flow +
journal  +
F
Fluctuations of the total entropy production in stochastic systems +
journal  +
E
Entropy production theorems and some consequences +
journal  +
R
Recovery of state-specific potential of molecular motor from single-molecule trajectory +
journal  +
E
Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States +
journal  +
D
Dynamics of a tracer granular particle as a nonequilibrium Markov process +
journal  +
R
Realm of validity of the Crooks relation +
journal  +
A
Analyzing friction forces with the Jarzynski equality +
journal  +
R
Reversible Quantum Brownian Heat Engines for Electrons +
journal  +
N
Nonequilibrium energetics of a single F1-ATPase molecule +
journal  +
M
Macroscopic constraints for the minimum entropy production principle +
journal  +
N
Nonequilibrium mechanics of active cytoskeletal networks +
journal  +
F
Fluctuations of energy flux in a simple dissipative out-of-equilibrium system +
journal  +
N
Nonequilibrium statistical mechanics of shear flow: Invariant quantities and current relations +
journal  +
T
The distribution function of entropy flow in stochastic systems +
journal  +
O
Optimum performance analysis of Feynman's engine as cold and hot ratchets +
journal  +
T
The Stokes efficiency for molecular motors and its applications +
journal  +
E
Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension +
journal  +
O
Optimal potentials for temperature ratchets +
journal  +
E
Entropy production of cyclic population dynamics +
journal  +
C
Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions +
journal  +
J
Jarzynski equality modified in the linear feedback system +
journal  +
T
Test of steady-state fluctuation theorem in turbulent Rayleigh- Bénard convection +
journal  +
Transformation properties of entropy production +
journal  +
O
On the symmetry of current probability distributions in jump processes +
journal  +
F
Fluctuation theorem for birth-death or chemical master equations with time-dependent rates +
journal  +
M
Multidimensional potentials of mean force from biased experiments along a single coordinate +
journal  +
E
Efficiency of free energy transduction in autonomous systems +
journal  +
F
Fluctuation theorem for currents and Schnakenberg network theory +
journal  +
Fluctuation symmetries for work and heat +
journal  +
N
Nonequilibrium steady-state fluctuations in actively cooled resonators +
journal  +
E
Extracting work from a single heat bath through feedback +
journal  +
Extended fluctuation-dissipation theorem for soft matter in stationary flow +
journal  +
S
Stochastic thermodynamics for Maxwell demon feedbacks +
journal  +
N
Non-equilibrium steady states: Maximization of the Shannon entropy associated with the distribution of dynamical trajectories in the presence of constraints +
journal  +
E
Experimental verification of Landauer's principle linking information and thermodynamics +
journal  +
B
Boundary layers in stochastic thermodynamics +
journal  +
F
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes +
journal  +
D
Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism +
journal  +
F
Fluctuation theorems for an asymmetric rotor in a granular gas +
journal  +
A
A Nonequilibrium Extension of the Clausius Heat Theorem +
journal  +
E
Effective temperatures of a driven, strongly anisotropic Brownian system +
journal  +
M
Molecular kinetic analysis of a finite-time Carnot cycle +
journal  +
E
Efficiency and fluctuation in tight-coupling model of molecular motor +
journal  +
C
Classical open systems with nonlinear nonlocal dissipation and state-dependent diffusion: Dynamical responses and the Jarzynski equality +
journal  +
G
Gallavotti-Cohen-Type Symmetry Related to Cycle Decompositions for Markov Chains and Biochemical Applications +
journal  +
F
Fluctuation-dissipation relations in driven dissipative systems +
journal  +
I
Information and flux in a feedback controlled Brownian ratchet +
journal  +
R
Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states +
journal  +
I
Information-theoretic approach to the study of control systems +
journal  +
D
Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes +
journal  +
C
Computer simulation of Feynman's ratchet and pawl system +
journal  +
I
Improving free-energy estimates from unidirectional work measurements: Theory and experiment +
journal  +
N
Nonlinear response and fluctuation-dissipation relations +
journal  +
F
Fluctuation theorem for nonequilibrium reactions +
journal  +
Finite-time thermodynamics for a single-level quantum dot +
journal  +
C
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport +
journal  +
N
Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field +
journal  +
H
Heat distribution function for motion in a general potential at low temperature +
journal  +
O
One-dimensional shift of a brownian particle under the feedback control +
journal  +
E
Entropy production in full phase space for continuous stochastic dynamics +
journal  +
S
Single-molecule thermodynamics: The heat distribution function of a charged particle in a static magnetic field +
journal  +
E
Extension of the fluctuation theorem +
journal  +
I
Irreversibilities and efficiency at maximum power of heat engines: The illustrative case of a thermoelectric generator +
journal  +
O
Optimal estimates of free energies from multistate nonequilibrium work data +
journal  +
B
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise +
journal  +
O
Open problems on information and feedback controlled systems +
journal  +
G
Giant acceleration of free diffusion by use of tilted periodic potentials +
journal  +
O
Optimizing the switching function for nonequilibrium free-energy calculations: An on-the-fly approach +
journal  +
I
Inequalities generalizing the second law of thermodynamics for transitions between nonstationary states +
journal  +
E
Einstein relation generalized to nonequilibrium +
journal  +
S
Stochastic energetics for non-Gaussian processes +
journal  +
E
Efficiency of a Carnot engine at maximum power output +
journal  +
Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics +
journal  +
T
The mechanics and fluctuation spectrum of active gels +
journal  +
F
Fluctuation theorems in the presence of information gain and feedback +
journal  +
T
Thermodynamics of feedback controlled systems +
journal  +
M
Multivariable fluctuation theorems in the steady-state cycle kinetics of single enzyme with competing substrates +
journal  +
T
The Jarzynski relation, fluctuation theorems, and stochastic thermodynamics for non-Markovian processes +
journal  +
E
Entropy production and fluctuation relations for a KPZ interface +
journal  +
U
Using bijective maps to improve free-energy estimates +
journal  +
O
Operation modes of the molecular motor kinesin +
journal  +
On anomalous diffusion and the out of equilibrium response function in one-dimensional models +
journal  +
On the efficiency of path sampling methods for the calculation of free energies from non-equilibrium simulations +
journal  +
M
Measure of the violation of the detailed balance criterion: A possible definition of a "distance" from equilibrium +
journal  +
S
Stochastic equations in black hole backgrounds and non-equilibrium fluctuation theorems +
journal  +
Steady-state work fluctuations of a dragged particle under external and thermal noise +
journal  +
F
Fluctuation theorem applied to F1-ATPase +
journal  +
T
Thermodynamics: A stirling effort +
journal  +
F
Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality +
journal  +
O
Off-equilibrium generalization of the fluctuation dissipation theorem for Ising spins and measurement of the linear response function +
journal  +
N
Nonequilibrium work fluctuations for oscillators in non-Markovian baths +
journal  +
F
Fluctuation theorem for transport in mesoscopic systems +
journal  +
A
Application of importance sampling to the computation of large deviations in nonequilibrium processes +
journal  +
N
Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor +
journal  +
P
Probability density functions of work and heat near the stochastic resonance of a colloidal particle +
journal  +
T
The stochastic chemomechanics of the F1-ATPase molecular motor +
journal  +
N
Non-equilibrium thermodynamics and topology of currents +
journal  +
F
Fluctuation theorems for a molecular refrigerator +
journal  +
W
Work and dissipation fluctuations near the stochastic resonance of a colloidal particle +
journal  +
T
Theory of a Systematic Computational Error in Free Energy Differences +
journal  +
M
Memory erasure in small systems +
journal  +
E
Entropy fluctuations in shell models of turbulence +
journal  +
F
Fluctuation ratios in the absence of microscopic time reversibility +
journal  +
A
A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes +
journal  +
C
Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise +
journal  +
M
Macroscopic expression connecting the rate of energy dissipation with the violation of the fluctuation response relation +
journal  +
A
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium +
journal  +
E
Efficiency at maximum power output of linear irreversible Carnot-like heat engines +
journal  +
S
Stochastic energetics of non-uniform temperature systems +
journal  +
C
Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms +
journal  +
T
Transient fluctuation relations for time-dependent particle transport +
journal  +
Three faces of the second law. I. Master equation formulation +
journal  +
F
Free energy transduction in a chemical motor model +
journal  +
E
Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality +
journal  +
Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates +
journal  +
F
Fluctuation-dissipation relations for Markov processes +
journal  +
E
Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State +
journal  +
P
Pumped biochemical reactions, nonequilibrium circulation, and stochastic resonance +
journal  +
F
Fluctuation-preserving coarse graining for biochemical systems +
journal  +
T
The folding cooperativity of a protein is controlled by its chain topology +
journal  +
A
A possible classification of nonequilibrium steady states +
journal  +
R
Refined Second Law of Thermodynamics for Fast Random Processes +
journal  +
O
Optimal protocols for minimal work processes in underdamped stochastic thermodynamics +
journal  +
R
Role of hidden slow degrees of freedom in the fluctuation theorem +
journal  +
M
Microscopic heat from the energetics of stochastic phenomena +
journal  +
P
Principles of control thermodynamics +
journal  +
Posterior probability and fluctuation theorem in stochastic processes +
journal  +
E
Escorted free energy simulations: Improving convergence by reducing dissipation +
journal  +
M
Measuring the fluctuation-dissipation ratio in glassy systems with no perturbing field +
journal  +
N
Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases +
journal  +
C
Current, maximum power and optimized efficiency of a Brownian heat engine +
journal  +
Current trends in finite-time thermodynamics +
journal  +
A
An update on the nonequilibrium linear response +
journal  +
H
Hydrodynamics and the fluctuation theorem +
journal  +
N
Nonequilibrium fluctuations in a resistor +
journal  +
S
Space-time phase transitions in driven kinetically constrained lattice models +
journal  +
G
Generating function formula of heat transfer in harmonic networks +
journal  +
H
Heat and work fluctuations for a harmonic oscillator +
journal  +
N
Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths +
journal  +
F
Fluctuation theorems for non-linear generalized Langevin systems +
journal  +
L
Length of time's arrow +
journal  +
I
Inequalities for Non-equilibrium Fluctuations of Work +
journal  +
S
Statistics of power injection in a plate set into chaotic vibration +
journal  +
N
Nonequilibrium work on spin glasses in longitudinal and transverse fields +
journal  +
S
Statistics of entropy production in linearized stochastic Systems +
journal  +
N
Nonequilibrium fluctuation theorems in the presence of local heating +
journal  +
W
Work distribution functions for hysteresis loops in a single-spin system +
journal  +
F
Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap +
journal  +
M
Making molecular machines work +
journal  +
T
The physics of molecular motors +
journal  +
S
Symmetries of generating functionals of Langevin processes with colored multiplicative noise +
journal  +
T
The energy-speed-accuracy trade-off in sensory adaptation +
journal  +
G
Geometrical expression of excess entropy production +
journal  +
F
Fluctuation relation and heterogeneous superdiffusion in glassy transport +
journal  +
H
Heat flow in chains driven by thermal noise +
journal  +
F
Fast-growth thermodynamic integration: Error and efficiency analysis +
journal  +
H
Heat fluctuations in a nonequilibrium bath +
journal  +
E
Entropy production and fluctuation theorem along a stochastic limit cycle +
journal  +
Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models +
journal  +
T
Thermophoretic depletion follows boltzmann distribution +
journal  +
G
Generalized detailed fluctuation theorem under nonequilibrium feedback control +
journal  +
I
Irreversible dynamics of a massive intruder in dense granular fluids +
journal  +
E
Effective temperatures of a heated Brownian particle +
journal  +
G
Generalized einstein or green-kubo relations for active biomolecular transport +
journal  +
O
Optimum protocol for fast-switching free-energy calculations +
journal  +
I
Improving fast-switching free energy estimates by dynamical freezing +
journal  +
N
Network theory of microscopic and macroscopic behavior of master equation systems +
journal  +
L
Lag inequality for birth-death processes with time-dependent rates +
journal  +
E
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments +
journal  +
U
Unattainability of Carnot efficiency in the Brownian heat engine +
journal  +
A
A generalized integral fluctuation theorem for general jump processes +
journal  +
M
Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics +
journal  +
F
Fluctuation theorems and the nonequilibrium thermodynamics of molecular motors +
journal  +
B
Bona fide stochastic resonance: A view point from stochastic energetics +
journal  +
T
Thermodynamics of a colloidal particle in a time-dependent nonharmonic potential +
journal  +
E
Efficiency at maximum power of Feynman's ratchet as a heat engine +
journal  +
M
Measurement of work in single-molecule pulling experiments +
journal  +
C
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? +
journal  +
E
Efficiency of molecular motors at maximum power +
journal  +
M
Modeling an efficient Brownian heat engine +
journal  +
E
Effective temperature of red-blood-cell membrane fluctuations +
journal  +
G
Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes +
journal  +
N
Nonequilibrium steady-state circulation and heat dissipation functional +
journal  +
O
On universality in ageing ferromagnets +
journal  +
B
Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods? +
journal  +
F
Fluctuation theorem for the flashing ratchet model of molecular motors +
journal  +
S
Supersymmetry and fluctuation relations for currents in closed networks +
journal  +
R
Reconstructing the free-energy landscape of a mechanically unfolded model protein +
journal  +
N
Nonequilibrium steady state thermodynamics and fluctuations for stochastic systems +
journal  +
Noncyclic and nonadiabatic geometric phase for counting statistics +
journal  +
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