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Thermodynamics of Computation

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  1. 119th Statistical Mechanics Conference
  2. APS March Meeting 2019
  3. ARTICLE A Theory of Human Life History Evolution : Diet , Intelligence , and Longevity
  4. ATP-dependent mechanics of red blood cells
  5. ATP Consumption by Mammalian Rod Photoreceptors in Darkness and in Light
  6. A "fast growth" method of computing free energy differences
  7. A (sub)graph isomorphism algorithm for matching large graphs
  8. A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling
  9. A 96 × 64 intelligent digital pixel array with extended binary stochastic arithmetic
  10. A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory
  11. A Cost / Speed / Reliability Trade-off in Erasing a Bit
  12. A DNA-fuelled molecular machine made of DNA
  13. A Gallavotti-Cohen-Evans-Morriss Like Symmetry for a Class of Markov Jump Processes
  14. A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics
  15. A Hitchhiker's guide to statistical tests for assessing randomized algorithms in software engineering
  16. A Kilobit Special Number Field Sieve Factorization
  17. A Map of the Interactome Network of the Metazoan C. elegans
  18. A Nonequilibrium Extension of the Clausius Heat Theorem
  19. A Note on Bennett’s Time-Space Tradeoff for Reversible Computation
  20. A Parallel Repetition Theorem
  21. A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes
  22. A Resilient, Low-Frequency, Small-World Human Brain Functional Network with Highly Connected Association Cortical Hubs
  23. A Sampling of the Yeast Proteome
  24. A Simple Histone Code Opens Many Paths to Epigenetics
  25. A Simple Model of Optimal Population Coding for Sensory Systems
  26. A Survey of Techniques for Approximate Computing
  27. A bound particle coupled to two thermostats
  28. A complete problem for statistical zero knowledge
  29. A complexity measure for selective matching of signals by the brain
  30. A complexity theoretic approach to randomness
  31. A cost/speed/reliability tradeoff to erasing
  32. A fast and elitist multiobjective genetic algorithm: NSGA-II
  33. A fast quantum mechanical algorithm for database search
  34. A field-theoretic approach to non-equilibrium work identities
  35. A fluctuation theorem for currents and non-linear response coefficients
  36. A fluctuation theorem for non-equilibrium relaxational systems driven by external forces
  37. A general framework for non-equilibrium phenomena: The master equation and its formal consequences
  38. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
  39. A general model for ontogenetic growth
  40. A general model for the origin of allometric scaling laws in biology
  41. A general model for the structure and allometry of plant vascular systems
  42. A general purpose RNA-cleaving DNA enzyme
  43. A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation
  44. A generalized integral fluctuation theorem for general jump processes
  45. A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
  46. A histone mutant reproduces the phenotype caused by loss of histone-modifying factor polycomb
  47. A master equation description of local fluctuations
  48. A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium
  49. A mathematical theory of communication
  50. A measure for brain complexity: relating functional segregation and integration in the nervous system.
  51. A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy
  52. A model for transmission of the H3K27me3 epigenetic mark
  53. A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli
  54. A molecular information ratchet
  55. A multidimensional filter algorithm for nonlinear equations and nonlinear least-squares
  56. A new notation for quantum mechanics
  57. A new polynomial-time algorithm for linear programming
  58. A note on monte carlo primality tests and algorithmic information theory
  59. A note on the Jarzynski equality
  60. A polynomial-time approximation algorithm for the permanent of a matrix with nonnegative entries
  61. A possible classification of nonequilibrium steady states
  62. A quantitative analysis of sniffing strategies in rats performing odor detection tasks
  63. A quantitative comparison of sRNA-based and protein-based gene regulation
  64. A quantitative estimation of the global translational activity in logarithmically growing yeast cells
  65. A reconfigurable stochastic architecture for highly reliable computing
  66. A rigorous derivation of the chemical master equation
  67. A selective control of olfactory bulb electrical activity in relation to food deprivation and satiety in rats.
  68. A simple coding procedure enhances a neuron’s information capacity
  69. A simple population protocol for fast robust approximate majority
  70. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions
  71. A simple theory of motor protein kinetics and energetics. II
  72. A small world of neuronal synchrony
  73. A spectral transform approach to stochastic circuits
  74. A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms
  75. A stochastic reconfigurable architecture for fault-tolerant computation with sequential logic
  76. A synthetic oscillatory network of transcriptional regulators
  77. A systems perspective on early olfactory coding
  78. A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension
  79. A tension-based theory of morphogenesis and compact wiring in the central nervous system
  80. A test of metabolically efficient coding in the retina
  81. A theory of the learnable
  82. A universal scaling law between gray matter and white matter of cerebral cortex.
  83. A yeast protein similar to bacterial two-component regulators.
  84. Aberrant frontal and temporal complex network structure in schizophrenia: a graph theoretical analysis
  85. Abnormal cortical networks in mild cognitive impairment and Alzheimer's disease
  86. Accuracy of direct gradient sensing by cell-surface receptors
  87. Active membrane fluctuations studied by micropipet aspiration
  88. Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments
  89. Addressing the wicked problem of quality in higher education: theoretical approaches and implications
  90. Adipose tissue in human infancy and childhood: An evolutionary perspective
  91. Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristics
  92. Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation
  93. Aerobic glycolysis in the human brain is associated with development and neotenous gene expression
  94. Aerobic glycolysis in the primate brain: Reconsidering the implications for growth and maintenance
  95. Age-related alterations in the modular organization of structural cortical network by using cortical thickness from MRI
  96. Age-related changes in modular organization of human brain functional networks
  97. Alec Boyd
  98. Algebraic methods in the theory of lower bounds for Boolean circuit complexity
  99. Algorithmic Self-Assembly of DNA Sierpinski Triangles
  100. Algorithmic randomness and physical entropy
  101. Alternative splicing in the nervous system: An emerging source of diversity and regulation
  102. Amorphous computing
  103. Amplification and adaptation in regulatory and sensory systems
  104. An Energy Budget for Signaling in the Grey Matter of the Brain
  105. An Energy Budget for the Olfactory Glomerulus
  106. An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation
  107. An Introduction to Kolmogorov Complexity and Its Applications
  108. An O(log n log log n) Space Algorithm for Undirected st-connectivity
  109. An amplified sensitivity arising from covalent modification in biological systems.
  110. An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions
  111. An analysis of selected computer interchange color spaces
  112. An analytical solution to the kinetics of breakable filament assembly
  113. An architecture for fault-tolerant computation with stochastic logic
  114. An autonomous and reversible Maxwell's demon
  115. An effect of DNA sequence on nucleosome occupancy and removal
  116. An efficient 10GBASE-T ethernet LDPC decoder design with low error floors
  117. An efficient graph theory based method to identify every minimal reaction set in a metabolic network
  118. An estimate of the total DNA in the biosphere
  119. An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions
  120. An experimental test of the Jarzynski equality in a mechanical experiment
  121. An information-theoretic equality implying the Jarzynski relation
  122. An information integration theory of consciousness
  123. An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle
  124. An informational process based on reversible universal cellular automata
  125. An intermediate level of abstraction for computational systems chemistry
  126. An introduction to population protocols
  127. An introduction to thermodynamics and statistical mechanics
  128. An update on the nonequilibrium linear response
  129. Analog Computation by DNA Strand Displacement Circuits
  130. Analog Versus Digital: Extrapolating from Electronics to Neurobiology
  131. Analog synthetic biology
  132. Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits
  133. Analyzing friction forces with the Jarzynski equality
  134. Analyzing molecular reaction networks: From pathways to chemical organizations
  135. Andre Barato
  136. Andy Adamatzky
  137. Anne Condon
  138. Another proof of Gell-Mann and Low's theorem
  139. Application-level correctness and its impact on fault tolerance
  140. Application of Boolean Algebra to Switching Circuit Design and to Error Detection
  141. Application of importance sampling to the computation of large deviations in nonequilibrium processes
  142. ApproxMA: Approximate Memory Access for Dynamic Precision Scaling
  143. Approximate computing: An emerging paradigm for energy-efficient design
  144. Approximate counting, uniform generation and rapidly mixing Markov chains
  145. Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural Network
  146. Are Recursion Theoretic Arguments Useful in Complexity Theory?
  147. Argonaute proteins couple chromatin silencing to alternative splicing
  148. Artemy Kolchinsky
  149. Article for analog vector algebra computation
  150. Assessing the nonequilibrium thermodynamics in a quenched quantum many-body system via single projective measurements
  151. Astrocytes Couple Synaptic Activity to Glucose Utilization in the Brain.
  152. Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution
  153. Asymmetrically modified nucleosomes
  154. Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic
  155. Asymptotics of work distributions in nonequilibrium systems
  156. Asynchronous computation with molecular reactions
  157. Attractant- and Disulfide-Induced Conformational Changes in the Ligand Binding Domain of the Chemotaxis Aspartate Receptor: A 19F NMR Study
  158. Average Case Complete Problems
  159. Avinash Lingamneni
  160. Aviv Bergman
  161. Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation
  162. BMI peak in infancy as a predictor for later BMI in the Uppsala Family Study
  163. BPP and the polynomial hierarchy
  164. BRAIN WORK AND BRAIN IMAGING
  165. Bacterial chemoreceptors: high-performance signaling in networked arrays
  166. Bacterial computing with engineered populations
  167. Barriers and silencers: A theoretical toolkit for control and containment of nucleosome-based epigenetic states
  168. Basal Metabolic Rate in Man
  169. Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise
  170. Bayesian integration in sensorimotor learning
  171. Beilstein Bozen Symposium
  172. Benjamin Machta
  173. Best-effort computing: Re-thinking parallel software and hardware
  174. Beyond Feast-Famine: Brain evolution, human life history, and the metabolic syndrome
  175. Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
  176. Biased sampling of nonequilibrium trajectories: Can fast switching simulations outperform conventional free energy calculation methods?
  177. Bidirectional single-electron counting and the fluctuation theorem
  178. Binary Multiplication with PN Sequences
  179. Binding of the Escherichia coli response regulator CheY to its target measured in vivo by fluorescence resonance energy transfer.
  180. Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1)
  181. Biochemical and pharmacological control of the multiplicity of coupling at G-protein-coupled receptors
  182. Biological solutions to transport network design
  183. Biomolecules under mechanical force
  184. Biorthogonal quantum mechanics
  185. Blake Pollard
  186. Body Composition and Energy Needs during Growth
  187. Body size and metabolic rate.
  188. Bona fide stochastic resonance: A view point from stochastic energetics
  189. Boundary layers in stochastic thermodynamics
  190. Bounds of efficiency at maximum power for linear, superlinear and sublinear irreversible Carnot-like heat engines
  191. Brain Graphs: Graphical Models of the Human Brain Connectome
  192. Brain anatomical network and intelligence
  193. Brain and body oxygen requirements of Gnathonemus petersii, a fish with an exceptionally large brain
  194. Brain growth, life history, and cognition in primate and human evolution
  195. Breaking DES Using a Molecular Computer
  196. Broadband Criticality of Human Brain Network Synchronization
  197. Broken symmetries and the masses of gauge bosons
  198. Brownian motion: A paradigm of soft matter and biological physics
  199. Brownian motors: Noisy transport far from equilibrium
  200. Bruno Loff
  201. Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium
  202. Building programmable jigsaw puzzles with RNA
  203. CNS energy metabolism as related to function
  204. CREW PRAMs and Decision Trees
  205. CURRENT OPINION IN STRUCTURAL BIOLOGY
  206. Calcium, the two-faced messenger of olfactory transduction and adaptation
  207. Calcium signalling and regulation in olfactory neurons
  208. Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality
  209. Calculating potentials of mean force from steered molecular dynamics simulations.
  210. Calculating source line level energy information for Android applications
  211. Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host
  212. Carl T. Bergstrom
  213. Carlton M. Caves
  214. Cell Type-Specific Tuning of Hippocampal Interneuron Firing during Gamma Oscillations In Vivo
  215. Cellular energy utilization and molecular origin of standard metabolic rate in mammals
  216. Cellular stoichiometry of the components of the chemotaxis signaling complex
  217. Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing
  218. Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation
  219. Cerebellar LTD and Pattern Recognition by Purkinje Cells
  220. ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
  221. Challenges for complexity measures: A perspective from social dynamics and collective social computation
  222. Changes in brain weights during the span of human life: Relation of brain weights to body heights and body weights
  223. Channel noise in neurons
  224. Characterization of Minimum Error Linear Coding with Sensory and Neural Noise
  225. Characterization of the RNA content of chromatin
  226. Characterization of the anterior cingulate's role in the at-risk mental state using graph theory
  227. Characterizing plastic depinning dynamics with the fluctuation theorem
  228. Chemical Paleogenetics. Molecular "Restoration Studies" of Extinct Forms of Life.
  229. Chemical Reaction Networks for Computing Polynomials
  230. Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms
  231. Chemical implementation of finite-state machines
  232. Chemical implementation of neural networks and Turing machines
  233. Chemical kinetics is turing universal
  234. Chemical reaction network theory for in-silico biologists
  235. Chemical sensing by nonequilibrium cooperative receptors
  236. Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions
  237. Chemotaxis in Escherichia coli analysed by three-dimensional tracking
  238. Childhood and the evolution of the human life course: An Introduction
  239. Chris Kempes
  240. Christian van den Broeck
  241. Christoph Flamm
  242. Christopher Jarzynski
  243. Chromatin Remodeling around Nucleosome-Free Regions Leads to Repression of Noncoding RNA Transcription
  244. Chromatin and epigenetic regulation of pre-mrna processing
  245. Chromatin computation
  246. Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels
  247. Chromatin organization marks exon-intron structure
  248. Chromatin proteins: Key responders to stress
  249. Chromatin structure and the inheritance of epigenetic information
  250. Circulation and Energy Metabolism of the Brain.

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