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Thermodynamics of Computation

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I
Inhibition of cerebral oxygen and glucose consumption in the dog by hypothermia, pentobarbital, and lidocaine +
11049288  +
S
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis +
121056679  +
D
Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex +
124002275  +
T
The physical nature of information +
126372168  +
C
Criticism of Feynman’s analysis of the ratchet as an engine +
126411809  +
T
Towards the parallel repetition conjecture +
126412742  +
H
Helical logic +
126568685  +
L
Lower bounds for resolution and cutting plane proofs and monotone computations +
127354844  +
A
A general framework for non-equilibrium phenomena: The master equation and its formal consequences +
127393743  +
N
Natural Proofs +
127433391  +
L
Large Deviation Bounds for Markov Chains +
127479639  +
S
Single-photon detection by rod cells of the retina +
128367441  +
A
Adipose tissue in human infancy and childhood: An evolutionary perspective +
128457206  +
C
Collective dynamics of 'small-world' networks +
128728263  +
E
Exorcist XIV: The wrath of Maxwell's Demon. Part II. From Szilard to Landauer and beyond +
129311901  +
I
Improved decoding of reed-solomon and algebraic-geometry codes +
129773954  +
A
A test of metabolically efficient coding in the retina +
135701311  +
T
The human connectome: A structural description of the human brain +
135774926  +
I
Incremental growth tables: Supplementary to previously published charts +
16088966  +
F
Facilitated target location in biological systems +
19038039  +
A
A master equation description of local fluctuations +
205004981  +
L
Local sites of activity-related glucose metabolism in rat olfactory bulb during olfactory stimulation +
205106851  +
K
Kinetic amplification of enzyme discrimination +
205176117  +
T
Topology of cosmic domains and strings +
206081187  +
N
Network theory of microscopic and macroscopic behavior of master equation systems +
206097027  +
A
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions +
206107587  +
P
Path integral formulation of general diffusion processes +
207008168  +
C
Convergence in the olfactory system: quantitative aspects of odour sensitivity +
208129961  +
T
The quantum open system as a model of the heat engine +
209084183  +
L
Laser cooling of atoms +
209086317  +
D
Dissipation-error tradeoff in proofreading +
209148958  +
F
Factoring numbers in O(logn) arithmetic steps +
209158014  +
T
The computer as a physical system: A microscopic quantum mechanical Hamiltonian model of computers as represented by Turing machines +
210005356  +
P
Probabilistic algorithm for testing primality +
210127966  +
N
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem +
211193191  +
Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes +
211193192  +
C
Conservative logic +
212023569  +
Classical and quantum limitations on energy consumption in computation +
212023575  +
T
The thermodynamics of computation-a review +
212023586  +
S
Sparse complete sets for NP: Solution of a conjecture of Berman and Hartmanis +
212190133  +
B
BPP and the polynomial hierarchy +
213206602  +
A
A new polynomial-time algorithm for linear programming +
214124241  +
T
The complexity of facets (and some facets of complexity) +
214181935  +
The topology of energy hypersurfaces III. The fundamental group of reaction mechanisms on potential energy hypersurfaces +
215031257  +
C
Cosmological experiments in superfluid helium? +
215121732  +
G
Games against nature +
215157532  +
T
The intractability of resolution +
215207536  +
L
Lower bounds on probabilistic linear decision trees +
215225567  +
Q
Quantum mechanical computers +
216027687  +
L
Lower bounds on the size of bounded depth circuits over a complete basis with logical addition +
217017522  +
T
Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injection +
217181012  +
M
Matching is as easy as matrix inversion +
217251288  +
O
One way functions and pseudorandom generators +
217251307  +
A
A quantitative analysis of sniffing strategies in rats performing odor detection tasks +
217272284  +
M
Motion out of noisy states +
218009012  +
R
Ramanujan graphs +
218043384  +
D
Dissipation and noise immunity in computation and communication +
218145916  +
A
A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation +
219004939  +
U
Use of mutual information to decrease entropy: Implications for the second law of thermodynamics +
219135706  +
A
Algorithmic randomness and physical entropy +
219139328  +
Approximate counting, uniform generation and rapidly mixing Markov chains +
219192994  +
T
The structure and function of the homeodomain +
219275192  +
Theory of reversible diffusion-influenced reactions +
220154003  +
I
Invertible cellular automata: A review +
220192605  +
A
An informational process based on reversible universal cellular automata +
220192606  +
C
Comparison between molecular dynamics simulations and the Smoluchowski theory of reactions in a hard-sphere liquid +
221151137  +
O
Of dreaming and wakefulness +
221295606  +
Optimization, approximation, and complexity classes +
221320372  +
T
Theoretical predictions of spatiotemporal receptive fields of fly LMCs, and experimental validation +
222013887  +
P
Pseudorandom generators for space-bounded computation +
222048007  +
A
A rigorous derivation of the chemical master equation +
222217055  +
O
On the degree of boolean functions as real polynomials +
224000275  +
G
Genetic programming as a means for programming computers by natural selection +
224001370  +
M
Molecular combustion motors +
224139516  +
E
Equilibrium microstates which generate second law violating steady states +
224150828  +
O
On the complexity of the parity argument and other inefficient proofs of existence +
224183781  +
M
Matching coding, circuits, cells, and molecules to signals: General principles of retinal design in the fly's eye +
224260184  +
H
Hardness vs randomness +
224267058  +
N
Nitric oxide and adenosine mediate vasodilation during functional activation in cerebellar cortex +
224269795  +
O
On rank vs. communication complexity +
225049560  +
D
Dynamical ensembles in nonequilibrium statistical mechanics +
225145398  +
H
Heat generation required by information erasure +
225157443  +
P
Path integrals with generalized Grassmann variables +
225265667  +
E
Evaluating sums over the Matsubara frequencies +
225338017  +
T
The superfamily of heme-copper respiratory oxidases +
24280490  +
C
Curie's principle +
250646022  +
R
Rethinking mammalian brain evolution +
250701717  +
RNA sequence analysis using covariance models +
250742868  +
O
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information +
250746471  +
C
Compendium of the Foundations of Classical Statistical Physics +
255072733  +
P
Physics of Self-Organization and Evolution +
255103766  +
I
Information Thermodynamics: Maxwell's Demon in Nonequilibrium Dynamics +
255108836  +
R
Reducibility among combinatorial problems +
255116830  +
E
Elements of Information Theory +
255176582  +
A
An introduction to population protocols +
255249399  +
T
The Phi-Bot: A robot controlled by a slime mould +
255310250  +
M
Minimal energy requirements in communication +
26234496  +
C
Component-placement optimization in the brain +
26302070  +
T
Targeting olfaction +
26315682  +
Y
Yeast HOG1 MAP kinase cascade is regulated by a multistep phosphorelay mechanism in the SLN1-YPD1-SSK1 'two-component' osmosensor +
26336791  +
R
Response and habituation of the human amygdala during visual processing of facial expression +
26424015  +
A
A tension-based theory of morphogenesis and compact wiring in the central nervous system +
27053095  +
D
Determining cortical landscapes +
27164064  +
R
Robustness in simple biochemical networks +
27289593  +
F
Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells +
27454430  +
D
Distribution of astroglia in glomeruli of the rat main olfactory bulb: Exclusion from the sensory subcompartment of neuropil +
27471496  +
S
Sparse coding with an overcomplete basis set: A strategy employed by V1? +
27493805  +
T
The 'independent components' of natural scenes are edge filters +
27493806  +
U
Uber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen +
280092254  +
P
Postnatal development of olfactory receptor cell axonal arbors +
28027554  +
H
Histone acetylation as an epigenetic determinant of long-term transcriptional competence +
28048247  +
N
Neurochemical organization of the macaque striate cortex: Correlation of cytochrome oxidase with Na+K+ATPase, NADPH-diaphorase, nitric oxide synthase, and N-methyl-D-aspartate receptor subunit 1 +
28114197  +
F
Fluctuations and irreversible processes +
281642405  +
H
High-energy behavior in quantum field theory +
281652804  +
B
Broken symmetries and the masses of gauge bosons +
281660352  +
Y
Yeast heterochromatin: Regulation of its assembly and inheritance by histones +
28232076  +
N
Neurochemical organization of the macaque retina: Effect of TTX on levels and gene expression of cytochrome oxidase and nitric oxide synthase and on the immunoreactivity of Na+ K+ ATPase and NMDA receptor subunit I +
28239266  +
S
Some informational aspects of visual perception +
282618972  +
M
Modification of activity-dependent increases of cerebral blood flow by excitatory synaptic activity and spikes in rat cerebellar cortex +
28486899  +
Q
Quantum equivalent of the Carnot cycle +
287145401  +
A
An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions +
287167797  +
R
Robustness in bacterial chemotaxis +
29050922  +
E
Energetics of functional activation in neural tissues +
29067977  +
S
Selforganization of matter and the evolution of biological macromolecules +
291017975  +
D
Distribution of oxygen tension on the surface of arterioles, capillaries and venules of brain cortex and in tissue in normoxia: An experimental study on rats +
29110915  +
P
Physiological evidence for dendrodendritic synaptic interactions in the rabbit's olfactory glomerulus +
291164161  +
T
The neural code of the retina +
29159844  +
C
Compartmental organization of the olfactory bulb glomerulus +
29162775  +
G
General mass action kinetics +
292020589  +
T
The relationship between stochastic and deterministic models for chemical reactions +
292165069  +
C
Chemotaxis in Escherichia coli analysed by three-dimensional tracking +
292167962  +
T
The connectional organization of the cortico-thalamic system of the cat +
29231233  +
N
Necessary and sufficient conditions for complex balancing in chemical kinetics +
293024046  +
C
Cerebellar Golgi cells in the rat: Receptive fields and timing of responses to facial stimulation +
29364182  +
A
A general model for the structure and allometry of plant vascular systems +
29382569  +
C
Calcium signalling and regulation in olfactory neurons +
29389448  +
F
Fast and slow photoreceptors - a comparative study of the functional diversity of coding and conductances in the Diptera +
294014071  +
P
Probability of second law violations in shearing steady states +
294071144  +
R
Reversible electronic logic using switches +
294095197  +
T
The olfactory bulb: Coding and processing of odor molecule information +
29505874  +
A
A systems perspective on early olfactory coding +
29505877  +
Article for analog vector algebra computation +
29518361  +
P
Photoreceptor performance and the co-ordination of achromatic and chromatic inputs in the fly visual system +
29544262  +
Phosphorylation and regulation of Raf by Akt (protein kinase B) +
29559304  +
A
A simple theory of motor protein kinetics and energetics. II +
29586423  +
A synthetic oscillatory network of transcriptional regulators +
30062393  +
C
Channel noise in neurons +
30110629  +
S
Sparse coding and decorrelation in primary visual cortex during natural vision +
30112150  +
B
Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1) +
30256106  +
S
Structure and function of a human TAF(II)250 double bromodomain module +
30366328  +
Stochastic energetics of non-uniform temperature systems +
30536717  +
R
Reversible space equals deterministic space +
30586913  +
A
A DNA-fuelled molecular machine made of DNA +
30641042  +
P
Pushing the limits of lithography +
30690473  +
U
Ultimate physical limits to computation +
30690476  +
C
CNS energy metabolism as related to function +
30845573  +
E
Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina +
31000721  +
T
Towards a cognitive neuroscience of consciousness: Basic evidence and a workspace framework +
32054795  +
U
Universal aspects of the chemomechanical coupling for molecular motors +
32067782  +
F
Finite time thermodynamic optimization or entropy generation minimization of energy systems +
32132785  +
E
Earth mover's distance as a metric for image retrieval +
32136368  +
M
Macromolecular crowding: An important but neglected aspect of the intracellular environment +
32155560  +
Mammalian MAP kinase signalling cascades +
32225829  +
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins +
32225847  +
S
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain +
32225848  +
P
Parallel simulation of compressible flow using automatic differentiation and PETSc +
32272147  +
Principles of control thermodynamics +
32292287  +
F
Feynman's ratchet optimization: Maximum power and maximum efficiency regimes +
32296997  +
S
Steady-state thermodynamics of Langevin systems +
32416153  +
F
Fast-growth thermodynamic integration: Error and efficiency analysis +
32508743  +
G
Giant acceleration of free diffusion by use of tilted periodic potentials +
32636731  +
N
Neurophysiological investigation of the basis of the fMRI signal +
32674704  +
S
Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction +
32732627  +
E
Energy as a constraint on the coding and processing of sensory information +
32739175  +
T
Translating the histone code +
32758077  +
The fundamental plan of the retina +
32801590  +
The physics of molecular motors +
32822163  +
A
A general model for ontogenetic growth +
32964061  +
S
Study of stochastic resonance by method of stochastic energetics +
32997804  +
C
Conformational spread in a ring of proteins: A stochastic approach to allostery +
33027618  +
T
Three-dimensional simulations of reversible bimolecular reactions: The simple target problem +
33099593  +
R
Representation of odorants by receptor neuron input to the mouse olfactory bulb +
33145204  +
G
Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins +
33151256  +
T
The physics of forgetting: Landauer's erasure principle and information theory +
33386807  +
The Szilard engine revisited: Entropy, macroscopic randomness, and symmetry breaking phase transitions +
33398104  +
R
Relationship between subsistence and age at weaning in "preindustrial" societies +
33573111  +
T
Time and space bounds for reversible simulation +
33577107  +
E
Easiness Assumptions and Hardness Tests: Trading Time for Zero Error +
33587677  +
P
Principles underlying mammalian neocortical scaling +
33605174  +
E
Experimental demonstration of a latch in clocked quantum-dot cellular automata +
33616974  +
R
Response correlation maps of neurons in the mammalian olfactory bulb +
34075404  +
T
The conscious access hypothesis: Origins and recent evidence +
34081846  +
B
Brownian motors: Noisy transport far from equilibrium +
34170044  +
P
Probabilistic mapping and volume measurement of human primary auditory cortex +
34184990  +
A
A mathematical theorem as the basis for the second law: Thomson's formulation applied to equilibrium +
34232286  +
S
Solution of a 20-variable 3-SAT problem on a DNA computer +
34408664  +
A
A fast and elitist multiobjective genetic algorithm: NSGA-II +
34555372  +
E
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality +
34596263  +
T
The Stokes efficiency for molecular motors and its applications +
34860381  +
K
Kinetics of reversible diffusion influenced reactions: The self-consistent relaxation time approximation +
34935262  +
F
Fluctuation theorems for non-linear generalized Langevin systems +
350070330  +
W
Work and heat probability distribution of an optically driven Brownian particle: Theory and experiments +
350096759  +
T
The Jarzynski relation, fluctuation theorems, and stochastic thermodynamics for non-Markovian processes +
350104874  +
F
Fluctuation relations and coarse-graining +
350104886  +
E
Equation of state in a small system: Violation of an assumption of Maxwell's demon +
350115830  +
I
Inhibition and Brain Work +
350181358  +
Inertial effects in nonequilibrium work fluctuations by a path integral approach +
350207591  +
C
Chemomechanical coupling of molecular motors: Thermodynamics, network representations, and balance conditions +
350207593  +
L
Local potential connectivity in cat primary visual cortex +
350233048  +
M
Microscopic heat from the energetics of stochastic phenomena +
350276694  +
T
The magnificent compromise: cortical field evolution in mammals. +
350363011  +
O
On the origin of modular variation +
35073708  +
E
Efficiency at maximum power: An analytically solvable model for stochastic heat engines +
351022158  +
C
Comparison of work fluctuation relations +
351064844  +
V
Vertex cover might be hard to approximate to within 2 - ε +
351105796  +
P
Programming biomolecular self-assembly pathways +
351124755  +
F
Failure of the work-hamiltonian connection for free-energy calculations +
351125094  +
S
Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulation +
351161297  +
C
Counting translocations of strongly repelling particles through single channels: Fluctuation theorem for membrane transport +
351161815  +
H
How the nature of an observation affects single-trajectory entropies +
351304938  +
A
A stochastic-based FPGA controller for an induction motor drive with integrated neural network algorithms +
351344228  +
T
The stochastic pump current and the non-adiabatic geometrical phase +
351365614  +
N
Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field +
351366264  +
R
Reversibility, heat dissipation, and the importance of the thermal environment in stochastic models of nonequilibrium steady states +
351388359  +
D
Distinguishing functional amino acid covariation from background linkage disequilibrium in HIV protease and reverse transcriptase +
351419513  +
Disrupted small-world networks in schizophrenia +
351499423  +
T
The neural correlates of consciousness: An update +
351506781  +
The brain's default network: Anatomy, function, and relevance to disease +
351506788  +
C
Computing the optimal protocol for finite-time processes in stochastic thermodynamics +
351514236  +
I
Identification and classification of hubs in brain networks +
351560119  +
W
Work and dissipation fluctuations near the stochastic resonance of a colloidal particle +
351595321  +
R
Role of external flow and frame invariance in stochastic thermodynamics +
351623285  +
F
Fluctuations of the total entropy production in stochastic systems +
351624247  +
O
Optimized free energies from bidirectional single-molecule force spectroscopy +
351656449  +
T
The statistical neuroanatomy of frontal networks in the macaque +
351656724  +
N
Nonequilibrium fluctuation theorems in the presence of local heating +
351668270  +
F
Fifty years of the VSEPR model +
351671707  +
E
Effective temperature of active matter +
351691616  +
N
Nucleosome organization in the Drosophila genome +
351693129  +
E
Escorted free energy simulations: Improving convergence by reducing dissipation +
351705647  +
R
Receptor noise and directional sensing in eukaryotic chemotaxis +
351782967  +
I
Inertial effects in Büttiker-Landauer motor and refrigerator at the overdamped limit +
351793012  +
S
Silent synapses, LTP, and the indirect parallel-fibre pathway: Computational consequences of optimal cerebellar noise-processing +
351811547  +
D
Dynamical consequences of lesions in cortical networks +
351813081  +
O
On the work - Hamiltonian connection in manipulated systems +
351813781  +
W
What we can do and what we cannot do with fMRI +
351832564  +
C
Cooperativity, sensitivity, and noise in biochemical signaling +
351875995  +
I
Integrated information in discrete dynamical systems: Motivation and theoretical framework +
351914790  +
L
Lower bounds on dissipation upon coarse graining +
351987663  +
B
Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise +
351992396  +
O
Optimal protocols for minimal work processes in underdamped stochastic thermodynamics +
351992406  +
On the solution to numerical problems using stochastic arithmetic +
352038824  +
M
Mapping the structural core of human cerebral cortex +
352085975  +
E
Efficiency at maximum power of Feynman's ratchet as a heat engine +
352119653  +
L
Large deviation function for entropy production in driven one-dimensional systems +
352120408  +
P
Programming DNA tube circumferences +
352158666  +
L
Length of time's arrow +
352266597  +
T
The synthesis of robust polynomial arithmetic with stochastic logic +
352330302  +
E
Entropy production and fluctuation theorem along a stochastic limit cycle +
352405425  +
Efficiency of molecular motors at maximum power +
352459520  +
M
Molecular kinetic analysis of a finite-time Carnot cycle +
352459631  +
A
A quantitative comparison of sRNA-based and protein-based gene regulation +
352517047  +
Q
Quantum criticality as a resource for quantum estimation +
352517235  +
N
Nonlinear response and fluctuation-dissipation relations +
352591166  +
A
Analyzing friction forces with the Jarzynski equality +
352697476  +
E
Efficiency of Brownian motors in terms of entropy production rate +
352701232  +
P
Probability density functions of work and heat near the stochastic resonance of a colloidal particle +
352701276  +
A
A small world of neuronal synchrony +
352713040  +
R
Realization of a feedback controlled flashing ratchet +
352753027  +
E
Engineering complex riboswitch regulation by dual genetic selection +
352775166  +
A
A quantitative estimation of the global translational activity in logarithmically growing yeast cells +
352778348  +
I
Invariant quantities in shear flow +
352830355  +
S
Statistics of power injection in a plate set into chaotic vibration +
352857990  +
T
The neural basis of functional brain imaging signals +
35356509  +
A
A method for measuring cerebral glucose metabolism in vivo by 13C-NMR spectroscopy +
35398538  +
C
Consciousness as integrated information: A provisional manifesto +
354018257  +
T
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes +
354030241  +
C
Colloquium: The physics of Maxwell's demon and information +
354070991  +
A
An examination of the role of autocatalytic cycles in the chemistry of proposed primordial reactions +
354073563  +
E
End of Moore's law: Thermal (noise) death of integration in micro and nano electronics +
35408133  +
U
Using bijective maps to improve free-energy estimates +
354136448  +
S
Small-world properties of nonlinear brain activity in schizophrenia +
354168097  +
O
Operation modes of the molecular motor kinesin +
354191629  +
R
Representation of nonequilibrium steady states in large mechanical systems +
354193553  +
F
Far-from-equilibrium measurements of thermodynamic length +
354229159  +
A
A 32-bit powerPC system-on-a-chip with support for dynamic voltage scaling and dynamic frequency scaling +
35432164  +
T
The anatomy of memory: An interactive overview of the parahippocampal- hippocampal network +
354355470  +
G
Generalizing Landauer's principle +
354411474  +
C
Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: A paradigm for DNA sensors and aptasensors +
354420001  +
F
Fluctuation ratios in the absence of microscopic time reversibility +
354438015  +
A
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic Memory +
354451687  +
M
Mapping out-of-equilibrium into equilibrium in one-dimensional transport models +
354470388  +
F
Fundamental aspects of protein - Protein association kinetics +
354498287  +
T
The mechanics and fluctuation spectrum of active gels +
354498944  +
R
Rapid Neocortical Dynamics: Cellular and Network Mechanisms +
354505580  +
S
Stochasticity of gene products from transcriptional pulsing +
354508555  +
M
Macroscopic expression connecting the rate of energy dissipation with the violation of the fluctuation response relation +
354508943  +
U
Uncovering intrinsic modular organization of spontaneous brain activity in humans +
354520372  +
O
Optimal potentials for temperature ratchets +
354528366  +
S
Statistical physics of a model binary genetic switch with linear feedback +
354528479  +
T
Tracking uncertainty with probabilistic logic circuit testing +
354528736  +
W
Work fluctuations in a nematic liquid crystal +
354544490  +
O
Optimal operation of feedback flashing ratchets +
354544492  +
D
Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation +
354544580  +
Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes +
354547277  +
F
Fluctuations of energy flux in a simple dissipative out-of-equilibrium system +
354568478  +
T
The work-Hamiltonian connection and the usefulness of the Jarzynski equality for free energy calculations +
354576707  +
O
Optimizing the switching function for nonequilibrium free-energy calculations: An on-the-fly approach +
354576740  +
T
Thermodynamics of feedback controlled systems +
354578624  +
N
Nonequilibrium thermodynamic analysis of squeezing +
354601258  +
E
Extended fluctuation-dissipation theorem for soft matter in stationary flow +
354612986  +
F
Fluctuation theorem for arbitrary open quantum systems +
354626993  +
Functional nucleic acid sensors +
354661589  +
T
The second wave of synthetic biology: From modules to systems +
354662355  +
M
Mutual information between input and output trajectories of biochemical networks +
354667722  +
Memory erasure in small systems +
354667888  +
B
Brain anatomical network and intelligence +
354725641  +
F
Functional brain networks develop from a "local to distributed" organization +
354725655  +
M
Measurement of work in single-molecule pulling experiments +
354770068  +
E
Erratum: Differences in auditory and physiological properties of HVc neurons between reproductively active male and female canaries (Serinus canaria) (European Journal of Neuroscience (2001) 14 (1377-1389)) +
35478043  +
M
Minimal energy cost for thermodynamic information processing: Measurement and information erasure +
354800341  +
S
Symbiotic relationship between brain structure and dynamics +
354811634  +
R
Receptive fields and functional architecture in the retina +
354828318  +
S
Stochastic thermodynamics in mesoscopic chemical oscillation systems +
354871553  +
G
Generalized integral fluctuation theorem for diffusion processes +
354881277  +
E
Efficient extraction of free energy profiles from nonequilibrium experiments +
354914340  +
T
The large deviation approach to statistical mechanics +
354947526  +
The stochastic pump effect and geometric phases in dissipative and stochastic systems +
354953397  +
O
One-dimensional shift of a brownian particle under the feedback control +
354957875  +
M
Modeling the impact of lesions in the human brain +
354959121  +
D
Development of large-scale functional brain networks in children +
355032872  +
H
Human brain networks in health and disease +
355078539  +
L
Logic gates and antisense DNA devices operating on a translator nucleic acid scaffold +
355091862  +
E
Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State +
355094500  +
D
Defining Network Topologies that Can Achieve Biochemical Adaptation +
355096453  +
N
Nonequilibrium steady-state fluctuations in actively cooled resonators +
355100110  +
S
Steady-state work fluctuations of a dragged particle under external and thermal noise +
355119749  +
E
Entropy production theorems and some consequences +
355120140  +
F
Fluctuation relation and heterogeneous superdiffusion in glassy transport +
355122434  +
T
Thermoelectric efficiency at maximum power in a quantum dot +
355127066  +
G
General peroxidase activity of G-quadruplex-hemin complexes and its application in ligand screening +
355138156  +
Generalized fluctuation-dissipation theorem for steady-state systems +
355155857  +
S
Second law of thermodynamics and quantum feedback control: Maxwell’s demon with weak measurements +
355178909  +
P
Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease +
355181014  +
C
Chromatin organization marks exon-intron structure +
355230355  +
D
Dynamical reconnection and stability constraints on cortical network architecture +
355231685  +
F
Fluctuation theorem for the flashing ratchet model of molecular motors +
355232316  +
Q
Qualia: The geometry of integrated information +
355237329  +
A
Asymptotics of work distributions in nonequilibrium systems +
355256747  +
R
Representations of Odor in the Piriform Cortex +
355262091  +
N
Novel algorithms for fast statistical analysis of scaled circuits +
355334761  +
T
The microvascular system of the striate and extrastriate visual cortex of the macaque +
355344889  +
R
Revealing modular architecture of human brain structural networks by using cortical thickness from MRI +
355344894  +
N
Nucleosomes are well positioned in exons and carry characteristic histone modifications +
355369630  +
C
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain +
355377069  +
M
Maximum likelihood and the single receptor +
355406369  +
W
Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity +
355450956  +
D
Dissipation and lag in irreversible processes +
355464977  +
I
Improving fast-switching free energy estimates by dynamical freezing +
355603037  +
A
A generalized integral fluctuation theorem for general jump processes +
355642944  +
D
Dental and skeletal growth in early fossil hominins +
355648097  +
C
Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surprise +
355655531  +
Covalent modifications of histones during mitosis and meiosis +
355675219  +
D
DNA as a universal substrate for chemical kinetics (Extended Abstract) +
355685979  +
S
Second law of thermodynamics with discrete quantum feedback control +
355686417  +
A
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions +
355704030  +
S
Sodium Entry during Action Potentials of Mammalian Neurons: Incomplete Inactivation and Reduced Metabolic Efficiency in Fast-Spiking Neurons +
355796617  +
A
An analytical solution to the kinetics of breakable filament assembly +
355799920  +
C
Control of DNA strand displacement kinetics using toehold exchange +
355808152  +
T
The entropy and efficiency of a molecular motor model +
355814706  +
H
Heat distribution function for motion in a general potential at low temperature +
355825286  +
T
Thermodynamic efficiency of information and heat flow +
355825304  +
R
Role of spatial averaging in the precision of gene expression patterns +
355827137  +
F
Forward flux sampling for rare event simulations +
355844686  +
D
Dependence of the fluctuation-Dissipation temperature on the choice of observable +
358008074  +
P
Posterior probability and fluctuation theorem in stochastic processes +
358088036  +
B
Biomolecules under mechanical force +
358115420  +
E
Entropy production as correlation between system and reservoir +
358224061  +
C
Communications: Can one identify nonequilibrium in a three-state system by analyzing two-state trajectories? +
358225956  +
H
Heat conduction in a three dimensional anharmonic crystal +
358237337  +
F
Finite-time thermodynamics for a single-level quantum dot +
358277716  +
T
The emergence of human uniqueness: Characters underlying behavioral modernity +
358319961  +
N
Nonexistence of classical diamagnetism and nonequilibrium fluctuation theorems for charged particles on a curved surface +
358332035  +
O
Optimum protocol for fast-switching free-energy calculations +
358350523  +
R
Reversible Computation and Reversible Programming Languages +
358351053  +
D
Design of a trichromatic cone array +
358387537  +
G
Generalized Jarzynski equality under nonequilibrium feedback control +
358414063  +
H
High nucleosome occupancy is encoded at human regulatory sequences +
358448284  +
S
Structural sources of robustness in biochemical reaction networks +
358450317  +
C
Chromatin structure and the inheritance of epigenetic information +
358493136  +
G
Generalized einstein or green-kubo relations for active biomolecular transport +
358543528  +
A
An efficient 10GBASE-T ethernet LDPC decoder design with low error floors +
358546613  +
N
Nonequilibrium statistical mechanics of shear flow: Invariant quantities and current relations +
358549527  +
D
Dynamical fluctuations for periodically driven diffusions +
358549549  +
E
Energetics and performance of a microscopic heat engine based on exact calculations of work and heat distributions +
358549554  +
G
Generalized Green-Kubo relation and integral fluctuation theorem for driven dissipative systems without microscopic time reversibility +
358719758  +
N
Nonequilibrium energetics of a single F1-ATPase molecule +
358835008  +
Noise stability of functions with low influences: Invariance and optimality +
358882072  +
E
Entropy production of cyclic population dynamics +
358945585  +
F
Fluctuation theorem applied to F1-ATPase +
358952460  +
E
Exciton-polariton Bose-Einstein condensation +
358972030  +
P
Physical origins of entropy production, free energy dissipation, and their mathematical representations +
358981984  +
C
Computer simulation of Feynman's ratchet and pawl system +
358991285  +
E
Entropy-based characterizations of the observable dependence of the fluctuation-dissipation temperature +
358991288  +
L
Limits of sensing temporal concentration changes by single cells +
358999001  +
C
Cooling classical particles with a microcanonical szilard engine +
359028485  +
A
A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli +
359073452  +
S
Synthetic mechanochemical molecular swimmer +
359094009  +
O
Optical realization of relativistic non-Hermitian quantum mechanics +
359094013  +
C
Characterization of the RNA content of chromatin +
359110816  +
N
New device for high-throughput viability screening of flow biofilms +
359119448  +
R
Reaching optimal efficiencies using nanosized photoelectric devices +
359200820  +
T
Three faces of the second law. I. Master equation formulation +
359275160  +
Three faces of the second law. I. Master equation formulation2 +
359275160  +
B
Bidirectional single-electron counting and the fluctuation theorem +
359276499  +
S
Stochastic thermodynamics and sustainable efficiency in work production +
359305897  +
E
Efficient physical embedding of topologically complex information processing networks in brains and computer circuits +
359319061  +
G
Good practices in free-energy calculations +
359344264  +
H
Higher coordination with less control-a result of information maximization in the sensorimotor loop +
359374625  +
M
Minimal model for Brownian vortexes +
359442081  +
I
Invisibility in non-Hermitian tight-binding lattices +
359663403  +
E
Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations +
359669719  +
Experimental accessibility of generalized fluctuation-dissipation relations for nonequilibrium steady states +
359681744  +
Emergent complex neural dynamics +
359708686  +
N
Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases +
359710721  +
T
Transient fluctuation relations for time-dependent particle transport +
359710824  +
J
Jarzynski equality modified in the linear feedback system +
359788656  +
F
Fluctuation relations and rare realizations of transport observables +
359805786  +
O
One rule to grow them all: A general theory of neuronal branching and its practical application +
359882443  +
I
Irreversible effects of memory +
360016066  +
Irreversible dynamics of a massive intruder in dense granular fluids +
360020398  +
N
Noncyclic and nonadiabatic geometric phase for counting statistics +
360074799  +
T
Thermodynamic performance characteristics of a Brownian microscopic heat engine driven by discrete and periodic temperature field +
360093530  +
A
An architecture for fault-tolerant computation with stochastic logic +
360123324  +
T
The selfish brain: Competition for energy resources +
360159727  +
E
Entropy production and fluctuation relations for a KPZ interface +
360185181  +
S
Symmetries of generating functionals of Langevin processes with colored multiplicative noise +
360185211  +
Statistical properties of entropy production derived from fluctuation theorems +
360185238  +
I
Information integration: Its relevance to brain function and consciousness +
360204979  +
A
Analysis of precision for scaling the intermediate variables in fixed-point arithmetic circuits +
361038338  +
E
Epigenetics in alternative pre-mRNA splicing +
361053904  +
Effect of feedback on the fidelity of information transmission of time-varying signals +
361075584  +
G
Generalized detailed fluctuation theorem under nonequilibrium feedback control +
361075605  +
E
Efficiency of autonomous soft nanomachines at maximum power +
361091078  +
Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator +
361091900  +
C
Constrained maximal power in small engines +
361091929  +
I
Increased accuracy of ligand sensing by receptor diffusion on cell surface +
361092415  +
D
Derivation of quantum master equation with counting fields by monitoring a probe +
361097165  +
N
Nonequilibrium detailed fluctuation theorem for repeated discrete feedback +
361110795  +
E
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic length in single-molecule pulling experiments +
361134801  +
W
Work probability distribution and tossing a biased coin +
361138865  +
T
Transformation properties of entropy production +
361138910  +
M
Measurement of damping and temperature: Precision bounds in Gaussian dissipative channels +
361172431  +
E
Efficient turing-universal computation with DNA polymers +
361179557  +
D
Dynamic DNA nanotechnology using strand-displacement reactions +
361188109  +
R
Relationships between gene expression and brain wiring in the adult rodent brain +
361204736  +
S
Synthetic in vitro transcriptional oscillators +
361208275  +
D
Density-dependent analysis of nonequilibrium paths improves free energy estimates II. A Feynman-Kac formalism +
361216166  +
O
On anomalous diffusion and the out of equilibrium response function in one-dimensional models +
361236154  +
F
Fluctuations and response in a non-equilibrium micron-sized system +
361236181  +
Q
Quantum szilard engine +
361277347  +
M
Measure of the violation of the detailed balance criterion: A possible definition of a "distance" from equilibrium +
361282095  +
A
A field-theoretic approach to non-equilibrium work identities +
361303914  +
P
Prevalence of epistasis in the evolution of influenza A surface proteins +
361373995  +
C
Correlated evolution of nearby residues in drosophilid proteins +
361374009  +
S
Structural properties of the Caenorhabditis elegans neuronal network +
361411246  +
C
Current trends in finite-time thermodynamics +
361417305  +
S
Supersymmetry and fluctuation relations for currents in closed networks +
361417912  +
Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particle +
361432507  +
N
Neuron-glia metabolic coupling and plasticity +
361434974  +
A
Adapt locally and act globally: Strategy to maintain high chemoreceptor sensitivity in complex environments +
361450355  +
S
Second-order selection for evolvability in a large Escherichia coli population +
361465411  +
A
Application of importance sampling to the computation of large deviations in nonequilibrium processes +
361517173  +
F
Flight of the FINCH through the java wilderness +
361536652  +
M
Microrheology and the fluctuation theorem in dense colloids +
361547451  +
S
Single-molecule thermodynamics: The heat distribution function of a charged particle in a static magnetic field +
361554653  +
N
Non-equilibrium steady states: Maximization of the Shannon entropy associated with the distribution of dynamical trajectories in the presence of constraints +
361554655  +
L
Large deviations of heat flow in harmonic chains +
361554656  +
D
Dietary constraints on encephalization in primates +
36159509  +
E
Experimental and Theoretical Approaches to Conscious Processing +
361650346  +
Q
Quantum fluctuation theorems in the strong damping limit +
361722651  +
E
Extracting work from a single heat bath through feedback +
361730853  +
S
Stochastic thermodynamics of single enzymes and molecular motors +
361736990  +
Stoichiometric network theory for nonequilibrium biochemical systems +
36177308  +
C
Combinatorial readout of dual histone modifications by paired chromatin-associated modules +
361801371  +
W
Weight consistency specifies regularities of macaque cortical networks +
361816509  +
E
Extracting work from a single heat bath via vanishing quantum coherence +
36182438  +
T
The thermodynamic meaning of negative entropy +
361874737  +
A
A bound particle coupled to two thermostats +
361892691  +
G
Genetic networks: Small numbers of big molecules +
36193334  +
E
Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics +
361948863  +
Effective temperatures of a heated Brownian particle +
361961877  +
I
Irreversibility-to-reversibility crossover in transient response of an optically trapped particle +
361977865  +
P
Patterns and mechanisms of Ancestral Histone protein inheritance in Budding yeast +
362049908  +
N
Neurobiologically realistic determinants of Self-Organized criticality in networks of spiking neurons +
362058322  +
T
Thermodynamic reversibility in feedback processes +
362115971  +
O
Optimum performance analysis of Feynman's engine as cold and hot ratchets +
362125189  +
M
Measures of trajectory ensemble disparity in nonequilibrium statistical dynamics +
362125739  +
W
Work distribution for the driven harmonic oscillator with time-dependent strength: Exact solution and slow driving +
362181312  +
N
Neural network computation with DNA strand displacement cascades +
362189130  +
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