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Thermodynamics of Computation

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From Thermodynamics of Computation
 Author nameSource nameVolumePagesYear
Necessary and sufficient conditions for complex balancing in chemical kineticsF. HornArchive for Rational Mechanics and Analysis49172-1861972
Self-regulating gene: An exact solutionJ. E.M. Hornos
D. Schultz
G. C.P. Innocentini
J. Wang
A. M. Walczak
J. N. Onuchic
P. G. Wolynes
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics722005
Comparison of work fluctuation relationsJordan Horowitz
Christopher Jarzynski
Journal of Statistical Mechanics: Theory and Experiment20072007
Thermodynamic reversibility in feedback processesJordan M. Horowitz
Juan M.R. Parrondo
EPL952011
Thermodynamics: A stirling effortJordan M. Horowitz
Juan M.R. Parrondo
Nature Physics8108-1092012
Optimizing non-ergodic feedback enginesJordan M. Horowitz
Juan M.R. Parrondo
Acta Physica Polonica B44803-8142013
Thermodynamics with continuous information flowJordan M. Horowitz
Massimiliano Esposito
Physical Review X42014
Nonequilibrium detailed fluctuation theorem for repeated discrete feedbackJordan M. Horowitz
Suriyanarayanan Vaikuntanathan
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics822010
Designing optimal discrete-feedback thermodynamic enginesJordan M. Horowitz
Juan M.R. Parrondo
New Journal of Physics132011
Second-law-like inequalities with information and their interpretationsJordan M. Horowitz
Henrik Sandberg
New Journal of Physics162014
Imitating chemical motors with optimal information motorsJordan M. Horowitz
Takahiro Sagawa
Juan M.R. Parrondo
Physical Review Letters1112013
Parallel simulation of compressible flow using automatic differentiation and PETScPaul D. Hovland
Lois C. McInnes
Parallel Computing27503-5192001
Effects of reservoir squeezing on quantum systems and work extractionX. L. Huang
Tao Wang
X. X. Yi
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics862012
Fast-growth thermodynamic integration: Error and efficiency analysisG. HummerJournal of Chemical Physics1147330-73372001
Reversible Quantum Brownian Heat Engines for ElectronsT. E. Humphrey
R. Newbury
R. P. Taylor
H. Linke
Physical Review Letters892002
Reversible thermoelectric nanomaterialsT. E. Humphrey
H. Linke
Physical Review Letters942005
Work and heat probability distributions in out-of-equilibrium systemsAlberto Imparato
Luca Peliti
Comptes Rendus Physique8556-5662007
Fluctuation relations for a driven Brownian particleA. Imparato
L. Peliti
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics742006
The distribution function of entropy flow in stochastic systemsA. Imparato
L. Peliti
Journal of Statistical Mechanics: Theory and Experiment2007
Probability density functions of work and heat near the stochastic resonance of a colloidal particleAlberto Imparato
Pierre Jop
Artyom Petrosyan
Sergio Ciliberto
Journal of Statistical Mechanics: Theory and Experiment20082008
Reconstructing the free-energy landscape of a mechanically unfolded model proteinAlberto Imparato
Stefano Luccioli
Alessandro Torcini
Physical Review Letters992007
Work and heat probability distribution of an optically driven Brownian particle: Theory and experimentsA. Imparato
L. Peliti
G. Pesce
G. Rusciano
A. Sasso
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics762007
Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneityKarl J. Indest
Wallace G. Buchholz
Jim R. Faeder
Peter Setlow
Journal of Food Science742009
Costs of encephalization: the energy trade-off hypothesis tested on birdsKarin Isler
Carel van Schaik
Journal of Human Evolution51228-2432006
Stochastic equations in black hole backgrounds and non-equilibrium fluctuation theoremsSatoshi Iso
Susumu Okazawa
Nuclear Physics B851380-4192011
Information thermodynamics on causal networksSosuke Ito
Takahiro Sagawa
Physical Review Letters1112013
Maxwell's demon in biochemical signal transduction with feedback loopSosuke Ito
Takahiro Sagawa
Nature Communications62015
Pushing the limits of lithographyTakashi Ito
Shinji Okazaki
Nature4061027-10312000
Study of stochastic resonance by method of stochastic energeticsToshiya IwaiPhysica A: Statistical Mechanics and its Applications300350-3582001
Stochasticity of gene products from transcriptional pulsingSrividya Iyer-Biswas
F. Hayot
C. Jayaprakash
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics792009
Molecular kinetic analysis of a finite-time Carnot cycleY. Izumida
K. Okuda
EPL832008
Onsager coefficients of a Brownian Carnot cycleY. Izumida
K. Okuda
European Physical Journal B77499-5042010
Histone Segregation on Replicating Chromatinâ€Vaughn Jackson
Roger Chalkley
Biochemistry246930-69381985
Histone Segregation on Replicating Chromatin†Vaughn Jackson
Roger Chalkley
Biochemistry246930-69381985
Second law of thermodynamics and quantum feedback control: Maxwell’s demon with weak measurementsKurt JacobsPhysical Review A - Atomic, Molecular, and Optical Physics802009
Structure and function of a human TAF(II)250 double bromodomain moduleRaymond H. Jacobson
Andreas G. Ladurner
David S. King
Robert Tjian
Science2881422-14252000
Stretching the limits of clock-gating efficiency in server-class processorsHans Jacobson
Pradip Bose
Zhigang Hu
Alper Buyuktosunoglu
Victor Zyuban
Rick Eickemeyer
Lee Eisen
John Griswell
Doug Logan
Balaram Sinharoy
Joel Tendier
Proceedings - International Symposium on High-Performance Computer Architecture238-2422005
Role of Astrocytes in Matching Blood Flow to Neuronal ActivityDanica Jakovcevic
David R. Harder
Current Topics in Developmental Biology7975-972007
Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approachC. JarzynskiPhysical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics565018-50351997
Nonequilibrium equality for free energy differencesC. JarzynskiPhysical Review Letters782690-26931997
Comparison of far-from-equilibrium work relationsChristopher JarzynskiComptes Rendus Physique8495-5062007
Nonequilibrium work theorem for a system strongly coupled to a thermal environmentChris JarzynskiJournal of Statistical Mechanics: Theory and Experiment2004
Rare events and the convergence of exponentially averaged work valuesChristopher JarzynskiPhysical Review E - Statistical, Nonlinear, and Soft Matter Physics732006
Lag inequality for birth-death processes with time-dependent ratesChristopher JarzynskiJournal of Physics A: Mathematical and General382005
Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the NanoscaleChristopher JarzynskiAnnual Review of Condensed Matter Physics2329-3512011
Classical and quantum fluctuation theorems for heat exchangeChristopher Jarzynski
Daniel K. Wójcik
Physical Review Letters922004
Generating Binary Sequences for Stochastic ComputingP. Jeavons
D. A. Cohen
J. Shawe-Taylor
IEEE Transactions on Information Theory40716-7201994
Translating the histone codeT. Jenuwein
C. D. Allis
Science2931074-10802001
Nucleosome positioning and gene regulation: Advances through genomicsCizhong Jiang
B. Franklin Pugh
Nature Reviews Genetics10161-1722009
Asynchronous computation with molecular reactionsHua Jiang
Marc D. Riedel
Keshab K. Parhi
Conference Record - Asilomar Conference on Signals, Systems and Computers493-4972011
Effective temperatures of a heated Brownian particleL. Joly
S. Merabia
J. L. Barrat
EPL942011
An efficient graph theory based method to identify every minimal reaction set in a metabolic networkSudhakar Jonnalagadda
Rajagopalan Srinivasan
BMC Systems Biology82014
Work and dissipation fluctuations near the stochastic resonance of a colloidal particleP. Jop
A. Petrosyan
S. Ciliberto
EPL812008
Work fluctuations in a nematic liquid crystalS. Joubaud
G. Huillard
A. Petrosyan
S. Ciliberto
Journal of Statistical Mechanics: Theory and Experiment20092009
Fluctuations of the total entropy production in stochastic systemsS. Joubaud
N. B. Garnier
S. Ciliberto
EPL822008
Fluctuation theorems for an asymmetric rotor in a granular gasSylvain Joubaud
Detlef Lohse
Devaraj Van Der Meer
Physical Review Letters1082012
The energy expansions of evolutionOlivia P. JudsonNature Ecology and Evolution12017
High-precision test of Landauer's principle in a feedback trapYonggun Jun
Momčilo Gavrilov
John Bechhoefer
Physical Review Letters1132014
TRNAdb 2009: Compilation of tRNA sequences and tRNA genesFrank Jühling
Mario Mörl
Roland K. Hartmann
Mathias Sprinzl
Joern Pütz
Peter Stadler
Nucleic Acids Research372009
Easiness Assumptions and Hardness Tests: Trading Time for Zero ErrorValentine KabanetsJournal of Computer and System Sciences63236-2522001
Derandomizing polynomial identity tests means proving circuit lower boundsValentine Kabanets
Russell Impagliazzo
Computational Complexity131-462004
On the shoulders of giants: Properties of the stellar halo and the milky way mass distributionPrajwal Raj Kafle
Sanjib Sharma
Geraint F. Lewis
Joss Bland-Hawthorn
Astrophysical Journal7942014
Holevo's bound from a general quantum fluctuation theoremDvir Kafri
Sebastian Deffner
Physical Review A - Atomic, Molecular, and Optical Physics862012
Large Deviation Bounds for Markov ChainsNabil KahaleCombinatorics Probability and Computing6465-4741997
Modelling the development of cortical systems networksMarcus Kaiser
Claus C. Hilgetag
Neurocomputing58-60297-3022004
Nonoptimal component placement, but short processing paths, due to long-distance projections in neural systemsMarcus Kaiser
Claus C. Hilgetag
PLoS Computational Biology20805-08152006
A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractionsMarcus Kaiser
Claus C. Hilgetag
Arjen Van Ooyen
Cerebral Cortex193001-30102009
The berg-purcell limit revisitedKazunari Kaizu
Wiet De Ronde
Joris Paijmans
Koichi Takahashi
Filipe Tostevin
Pieter Rein ten Wolde
Biophysical Journal106976-9852014
Analyzing molecular reaction networks: From pathways to chemical organizationsChristoph Kaleta
Florian Centler
Peter Dittrich
Molecular Biotechnology34117-1232006
Stochastic energetics for non-Gaussian processesKiyoshi Kanazawa
Takahiro Sagawa
Hisao Hayakawa
Physical Review Letters1082012
Profiling a Warehouse-Scale ComputerSvilen Kanev
Juan Pablo Darago
Kim Hazelwood
Parthasarathy Ranganathan
Tipp Moseley
Gu Yeon Wei
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IEEE Micro3654-592016
Global and regional brain metabolic scaling and its functional consequencesJan KarbowskiBMC Biology52007
Monotone Circuits for Connectivity Require Super-Logarithmic DepthMauricio Karchmer
Avi Wigderson
SIAM Journal on Discrete Mathematics3255-2651990
A new polynomial-time algorithm for linear programmingN. KarmarkarCombinatorica4373-3951984
Reducibility among combinatorial problemsRichard M. Karp50 Years of Integer Programming 1958-2008: From the Early Years to the State-of-the-Art219-2412010
Compartmental organization of the olfactory bulb glomerulusHahnah J. Kasowski
Hanna Kim
Charles A. Greer
Journal of Comparative Neurology407261-2741999
Heterochromatin formation involves changes in histone modifications over multiple cell generationsYael Katan-Khaykovich
Kevin Struhl
EMBO Journal242138-21492005
A C. elegans LSD1 Demethylase Contributes to Germline Immortality by Reprogramming Epigenetic MemoryDavid J. Katz
T. Matthew Edwards
Valerie Reinke
William G. Kelly
Cell137308-3202009
Gene expression of Caenorhabditis elegans neurons carries information on their synaptic connectivityAlon Kaufman
Gideon Dror
Isaac Meilijson
Eytan Ruppin
PLoS Computational Biology21561-15672006
Efficiency of free energy transduction in autonomous systemsKyogo Kawaguchi
Masaki Sano
Journal of the Physical Society of Japan802011
Two subtypes of non-pyramidal cells in rat hippocampal formation identified by intracellular recording and HRP injectionYasuo Kawaguchi
Kiyoshi Hama
Brain Research411190-1951987
Synthetic molecular motors and mechanical machinesEuan R. Kay
David A. Leigh
Francesco Zerbetto
Angewandte Chemie - International Edition4672-1912007
Drivers of bacterial maintenance and minimal energy requirementsPeter M. van Bodegom
David Wolpert
Eric Libby
Jan Amend
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Frontiers in Microbiology82017
Evolutionary tradeoffs in cellular composition across diverse bacteriaLawrence Wang
Jan P. Amend
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Tori Hoehler
Chris Kempes
ISME Journal102145-21572016
Spontaneously emerging cortical representations of visual attributesTal Kenet
Dmitri Bibitchkov
Misha Tsodyks
Amiram Grinvald
Amos Arieli
Nature425954-9562003
On boolean decision trees with faulty nodesClaire Kenyon
Valerie King
Random Structures & Algorithms5453-4641994
The sniff as a unit of olfactory processingAdam Kepecs
Naoshige Uchida
Zachary F. Mainen
Chemical Senses31167-1792006
Irreversibility-to-reversibility crossover in transient response of an optically trapped particleManas Khan
A. K. Sood
EPL942011
The unique games conjecture, integrality gap for cut problems and embeddability of negative type metrics into l 1Subhash A. Khot
Nisheeth K. Vishnoi
Proceedings - Annual IEEE Symposium on Foundations of Computer Science, FOCS200553-622005
Vertex cover might be hard to approximate to within 2 - εSubhash Khot
Oded Regev
Journal of Computer and System Sciences74335-3492008
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Fluctuation theorems for a molecular refrigeratorKyung Hyuk Kim
Hong Qian
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Architecture and Statistical Model of a Pulse-Mode Digital Multilayer Neural NetworkYoung Chul Kim
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IEEE Transactions on Neural Networks61109-11181995
Quantum szilard engineSang Wook Kim
Takahiro Sagawa
Simone De Liberato
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Physical Review Letters1062011
Construction of an in vitro bistable circuit from synthetic transcriptional switchesJongmin Kim
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Erik Winfree
Molecular Systems Biology22006
Synthetic in vitro transcriptional oscillatorsJongmin Kim
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Molecular Systems Biology72011
End of Moore's law: Thermal (noise) death of integration in micro and nano electronicsLaszlo B. KishPhysics Letters, Section A: General, Atomic and Solid State Physics305144-1492002
Postnatal development of olfactory receptor cell axonal arborsJason R. Klenoff
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An analytical solution to the kinetics of breakable filament assemblyChristopher A. Waudby
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How Much the Eye Tells the BrainKristin Koch
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Specific subtypes of cortical GABA interneurons contribute to the neurovascular coupling response to basal forebrain stimulationAra Kocharyan
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Xin Kang Tong
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Design principles of a bacterial signalling networkMarkus Kollmann
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Kilian Bartholomé
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Representation of nonequilibrium steady states in large mechanical systemsTeruhisa S. Komatsu
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Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady StatesTeruhisa S. Komatsu
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Advocating noise as an agent for ultra-low energy computing: Probabilistic complementary metal-oxide-semiconductor devices and their characteristicsPinar Korkmaz
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Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demonJ. V. Koski
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Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equalityIoan Kosztin
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Genetic programming as a means for programming computers by natural selectionJohn R. KozaStatistics and Computing487-1121994
Consensus paper: The cerebellum's role in movement and cognitionLeonard F. Koziol
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Darwinian demons, evolutionary complexity, and information maximizationDavid C. KrakauerChaos212011
Pooled energy budgets: Resituating human energy -allocation trade-offsKaren L. Kramer
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Incomplete current fluctuation theorems for a four-terminal modelThilo Krause
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Tracking uncertainty with probabilistic logic circuit testingSmita Krishnaswamy
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The magnificent compromise: cortical field evolution in mammals.Leah KrubitzerNeuron56201-2082007
Prevalence of epistasis in the evolution of influenza A surface proteinsSergey Kryazhimskiy
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Factor graphs and the sum-product algorithmFrank R. Kschischang
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IEEE Transactions on Information Theory47498-5192001
Energy allocation between brain and body during ontogenetic developmentBritta Kubera
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Biomolecules under mechanical forceSanjay Kumar
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Physics Reports4861-742010
Classical Langevin dynamics of a charged particle moving on a sphere and diamagnetism: A surpriseN. Kumar
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EPL862009
Symmetry properties of the large-deviation function of the velocity of a self-propelled polar particleNitin Kumar
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Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elementsAnshul Kundaje
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The connection between logical and thermodynamic irreversibilityJames Ladyman
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Fluctuation theorems in the presence of information gain and feedbackSourabh Lahiri
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Total entropy production fluctuation theorems in a nonequilibrium time-periodic steady stateS. Lahiri
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Exploring the thermodynamic limits of computation in integrated systems: Magnetic memory, nanomagnetic logic, and the landauer limitBrian Lambson
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The energy–speed–accuracy trade-off in sensory adaptationGanhui Lan
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An estimate of the total DNA in the biosphereHanna K.E. Landenmark
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Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspensionBoris Lander
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The energetics of genome complexityNick Lane
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The cost of cortical computationPeter LennieCurrent Biology13493-4972003
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Quantum work distribution for a driven diatomic moleculeAlison Leonard
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