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Reference Materials
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- Dervis C. Vural, Greg Morrison, L. Mahadevan Aging in complex interdependency networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 89, (2014)
- Aging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock Cell 148, 46-57 (2012)
- Hidenori Nakaoka, Yuichi Wakamoto Aging, mortality, and the fast growth trade-off of Schizosaccharomyces pombe PLoS Biology 15, (2017)
- Saurav Seshadri, Andreas Klaus, Daniel E. Winkowski, Patrick O. Kanold, Dietmar Plenz Altered avalanche dynamics in a developmental NMDAR hypofunction model of cognitive impairment Translational Psychiatry 8, (2018)
- Raphael J. Nawrotzki, Fernando Riosmena, Lori M. Hunter, Daniel M. Runfola Amplification or suppression: Social networks and the climate change-migration association in rural Mexico Global Environmental Change 35, 463-474 (2015)
- Daniel Yamins An Optimization-Based Approach to Understanding Sensory Systems Cognitive Neuroscience , (2019)
- Kronauer, St. Hilare, Rahman, Czeisler, Klerman An exploration of the temporal dynamics J Biol Rhythms , (2019)
- Monica Gallego, Erik J. Eide, Margaret F. Woolf, David M. Virshup, Daniel B. Forger An opposite role for tau in circadian rhythms revealed by mathematical modeling Proceedings of the National Academy of Sciences of the United States of America 103, 10618-10623 (2006)
- Alain Watts, Howard J. Gritton, Jamie Sweigart, Gina R. Poe Antidepressant suppression of non-REM sleep spindles and REM sleep impairs hippocampus-dependent learning while augmenting striatum-dependent learning Journal of Neuroscience 32, 13411-13420 (2012)
- Are There too Many Farms in the World? Labor-Market Transaction Costs, Machine Capacities and Optimal Farm Size ,
- Krithika Swaminathan, Elizabeth B. Klerman, Andrew J.K. Phillips Are individual differences in sleep and circadian timing amplified by use of artificial light sources? Journal of Biological Rhythms 32, 165-176 (2017)
- Susan Fitzpatrick Asking the Right Questions in Alzheimer’s Research Issues in Science and Technology 35(1), 77 - 79 (2018)
- Robert Marsland III, Wenping Cui, Joshua Goldford, Kirill Korolev, Alvaro Sanchez, Pankaj Mehta Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities PLoS Computational Biology , (2019)
- Chethan Pandarinath, Paul Nuyujukian, Christine H. Blabe, Brittany L. Sorice, Jad Saab, Francis R. Willett, Leigh R. Hochberg, Krishna V. Shenoy, Jaimie M. Henderson Brain computer interface eLife 6, (2017)
- Denny Borsboom, Angélique O.J. Cramer, Annemarie Kalis Brain disorders? Not really: Why network structures block reductionism in psychopathology research Behavioral and Brain Sciences 42, (2019)
- Urs Braun, Anais Harneit, Giulio Pergola, Tommaso Menara, Axel Schaefer, Richard F. Betzel, Zhenxiang Zang, Janina I. Schweiger, Kristina Schwarz, Junfang Chen, Giuseppe Blasi, Alessandro Bertolino, Daniel Durstewitz, Fabio Pasqualetti, Emanuel Schwarz, Andreas Meyer-Lindenberg, Danielle S. Bassett, Heike Tost Brain state stability during working memory is explained by network control theory, modulated by dopamine D1/D2 receptor function, and diminished in schizophrenia bioRxiv , (2019)
- CD4 memory T cell levels predict life span in genetically heterogeneous mice. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 11, 775-83 (1997)
- earl swift Chesapeake requiem chesapeake requiem ,
- Ehren L. Newman, Kishan Gupta, Jason R. Climer, Caitlin K. Monaghan, Michael E. Hasselmo Cholinergic modulation of cognitive processing: Insights drawn from computational models Frontiers in Behavioral Neuroscience , (2012)
- Choosing Prediction Over Explanation in Psychology: Lessons From Machine Learning ,
- S. H. Strogatz, R. E. Kronauer, C. A. Czeisler Circadian pacemaker interferes with sleep onset at specific times each day: Role in insomnia American Journal of Physiology - Regulatory Integrative and Comparative Physiology 253, (1987)
- Elise R. Facer-Childs, Brunno M. Campos, Benita Middleton, Debra J. Skene, Andrew P. Bagshaw Circadian phenotype impacts the brain's resting-state functional connectivity, attentional performance, and sleepiness Sleep 42, (2019)
- S. H. Strogatz, R. E. Kronauer, C. A. Czeisler Circadian regulation dominates homeostatic control of sleep length and prior wake length in humans Sleep 9, 353-364 (1986)
- James K. Wyatt, Angela Ritz-De Cecco, Charles A. Czeisler, Derk Jan Dijk Circadian temperature and melatonin rhythms, sleep, and neurobehavioral function in humans living on a 20-h day American Journal of Physiology - Regulatory Integrative and Comparative Physiology 277, (1999)
- Raphael J. Nawrotzki, Jack DeWaard, Maryia Bakhtsiyarava, Jasmine Trang Ha Climate shocks and rural-urban migration in Mexico: exploring nonlinearities and thresholds Climatic Change 140, 243-258 (2017)
- Raphael J. Nawrotzki, Jack DeWaard Climate shocks and the timing of migration from Mexico Population and Environment 38, 72-100 (2016)
- Gina R. Poe, Christine M. Walsh, Theresa E. Bjorness Cognitive neuroscience of sleep Progress in Brain Research 185, 1-19 (2010)
- Tara C. Thiagarajan, Mikhail A. Lebedev, Miguel A. Nicolelis, Dietmar Plenz Coherence potentials: Loss-less, all-or-none network events in the cortex PLoS Biology 8, (2010)
- Andrea Avena-Koenigsberger, Bratislav Misic, Olaf Sporns Communication dynamics in complex brain networks Nature Reviews Neuroscience 19, 17-33 (2018)
- Community of the Self ,
- Thomas Kantermann, Haein Sung, Helen J. Burgess Comparing the Morningness-Eveningness Questionnaire and Munich ChronoType Questionnaire to the dim light melatonin onset Journal of Biological Rhythms 30, 449-453 (2015)
- Complexity of neural computation and cognition Curr Opin Neurobiol 37, v-viii (2016)
- E. J. Eide, M. F. Woolf, H. Kang, P. Woolf, W. Hurst, F. Camacho, E. L. Vielhaber, A. Giovanni, D. M. Virshup Control of Mammalian Circadian Rhythm by CKI -Regulated Proteasome-Mediated PER2 Degradation Molecular and Cellular Biology 25, 2795-2807 (2005)
- Peter A Tass Coordinated reset Cureus , (2017)
- Judy Syrkin-Nikolau, Raumin Neuville, Johanna O'Day, Chioma Anidi, Mandy Miller Koop, Talora Martin, Peter A. Tass, Helen Bronte-Stewart Coordinated reset vibrotactile stimulation shows prolonged improvement in Parkinson's disease Movement Disorders 33, 179-180 (2018)
- Correlation between genetic regulation of immune responsiveness and host defence against infections and tumours European Journal of Clinical Investigation 12, 373-376 (1982)
- Si Tang, Samraat Pawar, Stefano Allesina Correlation between interaction strengths drives stability in large ecological networks Ecology Letters 17, 1094-1100 (2014)
- Jaclyn Durkin, Aneesha K. Suresh, Julie Colbath, Christopher Broussard, Jiaxing Wu, Michal Zochowski, Sara J. Aton Cortically coordinated NREM thalamocortical oscillations play an essential, instructive role in visual system plasticity Proceedings of the National Academy of Sciences of the United States of America 114, 10485-10490 (2017)
- Dmitriy Podolskiy, Ivan Molodtsov, Alexander Zenin, Valeria Kogan, Leonid I. Menshikov, Vadim N. Gladyshev, Robert J. Shmookler Reis, Peter O. Fedichev Critical dynamics of gene networks is a mechanism behind ageing and Gompertz law q-bio.MN , (2016)
- Matti Nykter, Nathan D. Price, Antti Larjo, Tommi Aho, Stuart A. Kauffman, Olli Yli-Harja, Ilya Shmulevich Critical networks exhibit maximal information diversity in structure-dynamics relationships Physical Review Letters 100, (2008)
- Critical slowing down as early warning for the onset and termination of depression ,
- Critical slowing down as early warning for the onset and termination of depression2 ,
- Critical slowing down as early warning for the onset and termination of depression3 ,
- Critical slowing down as early warning for the onset and termination of depression4 ,
- Data analysis using regression and multilevel/hierarchical models ,
- Christian Meisel, Kimberlyn Bailey, Peter Achermann, Dietmar Plenz Decline of long-range temporal correlations in the human brain during sustained wakefulness Scientific Reports 7, (2017)
- Micaela Y. Chan, Denise C. Park, Neil K. Savalia, Steven E. Petersen, Gagan S. Wig Decreased segregation of brain systems across the healthy adult lifespan Proceedings of the National Academy of Sciences 111, E4997-E5006 (2014)
- Demography of dietary restriction and death in Drosophila Science 301, 1731-1733 (2003)
- Differential and enhanced response to climate forcing in diarrheal disease due to rotavirus across a megacity of the developing world Proceedings of the National Academy of Sciences 113, 4092-4097 (2016)
- Owen R. Jones, Alexander Scheuerlein, Roberto Salguero-Gómez, Carlo Giovanni Camarda, Ralf Schaible, Brenda B. Casper, Johan P. Dahlgren, Johan Ehrlén, María B. García, Eric S. Menges, Pedro F. Quintana-Ascencio, Hal Caswell, Annette Baudisch, James W. Vaupel Diversity of ageing across the tree of life Nature 505, 169-173 (2014)
- Akshit Goyal, Sergei Maslov Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems Physical Review Letters 120, (2018)
- Doi.org/10.1073/pnas.1810630115 ,
- Raphael J. Nawrotzki, Daniel M. Runfola, Lori M. Hunter, Fernando Riosmena Domestic and International Climate Migration from Rural Mexico Human Ecology 44, 687-699 (2016)
- Sanne M.W. Gijzel, Ingrid A. Van De Leemput, Marten Scheffer, Mattia Roppolo, Marcel G.M. Olde Rikkert, René J.F. Melis Dynamical Resilience Indicators in Time Series of Self-Rated Health Correspond to Frailty Levels in Older Adults Journals of Gerontology - Series A Biological Sciences and Medical Sciences 72, 991-996 (2017)
- Dynamical indicators of resilience in postural balance time series are related to successful aging in high-functioning older adults ,
- Marten Scheffer, Jordi Bascompte, William A. Brock, Victor Brovkin, Stephen R. Carpenter, Vasilis Dakos, Hermann Held, Egbert H. Van Nes, Max Rietkerk, George Sugihara Early-warning signals for critical transitions Nature 461, 53-59 (2009)
- Eco-Evolutionary Theory and Insect Outbreaks The American Naturalist 189, 616-629 (2017)
- Ecosystem tipping points in an evolving world Nature Ecology and Evolution 3, 355-362 (2019)
- Alla Karpova, Roozbeh Kiani Editorial overview: Neurobiology of cognitive behavior: Complexity of neural computation and cognition Current Opinion in Neurobiology 37, v-viii (2016)
- Wendy Hasenkamp, Lawrence W. Barsalou Effects of Meditation Experience on Functional Connectivity of Distributed Brain Networks Frontiers in Human Neuroscience 6, 1-14 (2012)
- Effects of host heterogeneity on pathogen diversity and evolution Ecology Letters 18, 1252-1261 (2015)
- Selenne Bañuelos, Janet Best, Gemma Huguet, Alicia Prieto-Langarica, Pamela B. Pyzza, Markus H. Schmidt, Shelby Wilson Effects of thermoregulation on human sleep patterns a mathematical model , 123-147 (2015)
- Damian W. Rivett, Matt L. Jones, Josep Ramoneda, Shorok B. Mombrikotb, Emma Ransome, Thomas Bell Elevated success of multispecies bacterial invasions impacts community composition during ecological succession Ecology Letters 21, 516-524 (2018)
- Ulrich Beck Emancipatory catastrophism: What does it mean to climate change and risk society? Current Sociology 63, 75-88 (2015)
- Emergence of complex dynamics in a simple model of signaling networks ,
- Caterina Gratton, Jonathan M. Koller, William Shannon, Deanna J. Greene, Baijayanta Maiti, Abraham Z. Snyder, Steven E. Petersen, Joel S. Perlmutter, Meghan C. Campbell Emergent Functional Network Effects in Parkinson Disease Cerebral cortex (New York, N.Y. : 1991) 29, 1701 (2019)
- Joshua E. Goldford, Nanxi Lu, Djordje Bajić, Sylvie Estrela, Mikhail Tikhonov, Alicia Sanchez-Gorostiaga, Daniel Segrè, Pankaj Mehta, Alvaro Sanchez Emergent simplicity in microbial community assembly Science 361, 469-474 (2018)
- Kenneth P. Wright, Andrew W. McHill, Brian R. Birks, Brandon R. Griffin, Thomas Rusterholz, Evan D. Chinoy Entrainment of the human circadian clock to the natural light-dark cycle Current Biology 23, 1554-1558 (2013)
- Environmental Dimensions of Migration ,
- Evidence of strain structure in Plasmodium falciparum var gene repertoires in children from Gabon, West Africa ,
- Richard Potts Evolution and climate variability Science 273, 922-923 (1996)
- Gina R. Poe, Douglas A. Nitz, Bruce L. McNaughton, Carol A. Barnes Experience-dependent phase-reversal of hippocampal neuron firing during REM sleep Brain Research 855, 176-180 (2000)
- Joshua J. Gooley, Kyle Chamberlain, Kurt A. Smith, Sat Bir S. Khalsa, Shantha M.W. Rajaratnam, Eliza Van Reen, Jamie M. Zeitzer, Charles A. Czeisler, Steven W. Lockley Exposure to room light before bedtime suppresses melatonin onset and shortens melatonin duration in humans Journal of Clinical Endocrinology and Metabolism 96, (2011)
- Extended Twilight among Isogenic C. elegans Causes a Disproportionate Scaling between Lifespan and Health Cell Systems 3, 333-345.e4 (2016)
- Fisher's geometrical model and the mutational patterns of antibiotic resistance across dose gradients Evolution 71, 23-37 (2017)
- Fisher's geometrical model emerges as a property of complex integrated phenotypic networks Genetics 197, 237-255 (2014)
- Gabriel Yvon-Durocher, Andrew P. Allen, Maria Cellamare, Matteo Dossena, Kevin J. Gaston, Maria Leitao, José M. Montoya, Daniel C. Reuman, Guy Woodward, Mark Trimmer Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton PLoS Biology 13, (2015)
- Fractal dynamics in physiology: Alterations with disease and aging ,
- Frequency-dependent selection in vaccine-associated pneumococcal population dynamics Nature Ecology and Evolution 1, 1950-1960 (2017)
- Caterina Gratton, Timothy O. Laumann, Ashley N. Nielsen, Deanna J. Greene, Evan M. Gordon, Adrian W. Gilmore, Steven M. Nelson, Rebecca S. Coalson, Abraham Z. Snyder, Bradley L. Schlaggar, Nico U.F. Dosenbach, Steven E. Petersen Functional Brain Networks Are Dominated by Stable Group and Individual Factors, Not Cognitive or Daily Variation Neuron 98, 439-452.e5 (2018)
- Genetic control of immune responsiveness, aging and tumor incidence Mechanisms of Ageing and Development 96, 1-13 (1997)
- Genetic regulation of the specific and non-specific component of immunity Immunology Letters 16, 205-217 (1987)
- Ashbrook, Krystal, Fu, Ptacek Genetics of the human circadian clock and sleep homeostat , (2019)
- Naomi Adelson Health beliefs and the politics of Cree well-being Health 2, 5-22 (1998)
- Kensuke Fukuda, H. Eugene Stanley, Luis A.Nunes Amaral Heuristic segmentation of a nonstationary time series Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 69, (2004)
- Howard Pattee Hierarchy theory: the challenge of complex systems , (1973)
- H.H. Pattee Hierarchy theory: the challenge of complex systems2 , (1973)
- Chethan Pandarinath, Paul Nuyujukian, Christine H. Blabe, Brittany L. Sorice, Jad Saab, Francis R. Willett, Leigh R. Hochberg, Krishna V. Shenoy, Jaimie M. Henderson High performance communication by people with paralysis using an intracortical brain-computer interface eLife 6, (2017)
- Andrew J.K. Phillips, Parisa Vidafar, Angus C. Burns, Elise M. McGlashan, Clare Anderson, Shantha M.W. Rajaratnam, Steven W. Lockley, Sean W. Cain High sensitivity and interindividual variability in the response of the human circadian system to evening light Proceedings of the National Academy of Sciences of the United States of America 116, 12019-12024 (2019)
- Nicolette Ognjanovski, Christopher Broussard, Michal Zochowski, Sara J. Aton Hippocampal network oscillations rescue memory consolidation deficits caused by sleep loss Cerebral Cortex 28, 3711-3723 (2018)
- Graham H. Diering, Raja S. Nirujogi, Richard H. Roth, Paul F. Worley, Akhilesh Pandey, Richard L. Huganir Homer1a drives homeostatic scaling-down of excitatory synapses during sleep Science 355, 511-515 (2017)
- David Lam How the World Survived the Population Bomb: Lessons From 50 Years of Extraordinary Demographic History Demography 48, 1231-1262 (2011)
- Reto Huber, Hanna Mäki, Mario Rosanova, Silvia Casarotto, Paola Canali, Adenauer G. Casali, Giulio Tononi, Marcello Massimini Human cortical excitability increases with time awake Cerebral Cortex 23, 332-338 (2013)
- Christopher W. Lynn, Lia Papadopoulos, Ari E. Kahn, Danielle S. Bassett Human information processing in complex networks arXiv , (2019)
- In Vivo Amelioration of Age-Associated Hallmarks by Partial Reprogramming Cellular reprogramming by transient expression of Yamanaka factors ameliorates age-associated symptoms, prolongs lifespan in progeroid mice, and improves tissue homeostasis in older Cell 167, 1719-1733 (2016)
- Michael Huemer In defence of repugnance Mind 117, 900-930 (2008)
- Increased Network Interdependency Leads to Aging Physical Review E - Statistical, Nonlinear, and Soft Matter Physics , 1-11 (2013)
- Indirect genetic effects clarify how traits can evolve even when fitness does not , 1-19 (1930)
- Sushrut Ghonge, Dervis Can Vural Inferring network structure from cascades Physical Review E 96, (2017)
- V. Covelli, D. Mouton, V. Di Majo, Y. Bouthillier, C. Bangrazi, J. C. Mevel, S. Rebessi, G. Doria, G. Biozzi Inheritance of immune responsiveness, life span, and disease incidence in interline crosses of mice selected for high or low multispecific antibody production. Journal of Immunology 142, 1224-1234 (1989)