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From Thermodynamics of Computation
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- Karpur Shukla (47 revisions)
- Michael Frank (26 revisions)
- Thermodynamics of Computation:Reference group/Allowed values (17 revisions)
- Entropy production along a stochastic trajectory and an integral fluctuation theorem (14 revisions)
- Sadasivan Shankar (14 revisions)
- Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences (12 revisions)
- Logical Reversibility of Computation (12 revisions)
- Stochastic thermodynamics, fluctuation theorems and molecular machines (11 revisions)
- Fluctuation theorems for stochastic dynamics (11 revisions)
- Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach (10 revisions)
- Main Page (9 revisions)
- A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics (9 revisions)
- Quantum fluctuation relations: foundations and applications (8 revisions)
- Work and heat probability distributions in out-of-equilibrium systems (8 revisions)
- Steady state thermodynamics (8 revisions)
- Petrosyan A 2010 Fluctuations in out-of-equilibrium systems: from theory to experiment J. Stat (8 revisions)
- Nonequilibrium equality for free energy differences (8 revisions)
- Irreversibility and Heat Generation in the Computing Process (8 revisions)
- Thermodynamics (Hoboken (7 revisions)
- The thermodynamics of computation-a review (7 revisions)
- Nonequilibrium generation of information in copolymerization processes. (7 revisions)
- Second law and Landauer principle far from equilibrium (7 revisions)
- Equilibrium microstates which generate second law violating steady states (6 revisions)
- Handbook of stochastic methods for physics, chemistry and the natural sciences (6 revisions)
- The mesoscopic dynamics of thermodynamic systems (6 revisions)
- Langevin Equation and Thermodynamics (6 revisions)
- Non-equilibrium work relations (6 revisions)
- Probability of second law violations in shearing steady states (6 revisions)
- The Nonequilibrium Thermodynamics of Small Systems (6 revisions)
- Quantum entropy production as a measure of irreversibility (6 revisions)
- On the Origin and the Use of Fluctuation Relations for the Entropy (6 revisions)
- Erratum: Nonequilibrium fluctuations, fluctuation theorems, and counting statistics in quantum systems (6 revisions)
- Dynamical ensembles in nonequilibrium statistical mechanics (6 revisions)
- Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations (6 revisions)
- General theory of thermal fluctuations in nonlinear systems (6 revisions)
- Fluctuation Theorems (6 revisions)
- Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation (6 revisions)
- Reviews of nonlinear dynamics and complexity Nonequilibrium Statistical Physics of Small Systems: Fluctuation Relations and Beyond (Weinheim: Wiley-VCH) (6 revisions)
- Irreversibility and the second law of thermodynamics at the nanoscale (6 revisions)
- Free energy reconstruction from nonequilibrium single-molecule pulling experiments. (6 revisions)
- Path-ensemble averages in systems driven far from equilibrium (6 revisions)
- Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence (6 revisions)
- Path integrals with generalized Grassmann variables (6 revisions)
- Steady-state thermodynamics of Langevin systems (6 revisions)
- Thermodynamics 3rd enlarged edn (6 revisions)
- Mechanics of Nonequilibrium Liquids 2nd edn (6 revisions)
- Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport (6 revisions)
- Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes (6 revisions)
- Theory for non-equilibrium statistical mechanics. (6 revisions)
- Fluctuation theorem for stochastic dynamics (6 revisions)
- Kinetic Characterization of Heat Bath and the Energetics of Thermal Ratchet Models (6 revisions)
- Brownian motion: A paradigm of soft matter and biological physics (6 revisions)
- The Fluctuation Theorem (6 revisions)
- Elements of Information Theory (6 revisions)
- Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale (6 revisions)
- Stochastic thermodynamics of nonequilibrium steady states in chemical reaction systems (5 revisions)
- Theory of Nonequilibrium Steady States (5 revisions)
- Thermodynamics of information (5 revisions)
- Generalized detailed fluctuation theorem under nonequilibrium feedback control (5 revisions)
- Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity (5 revisions)
- Test page (5 revisions)
- Vijay Balasubramanian (5 revisions)
- Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality (5 revisions)
- A DNA-fuelled molecular machine made of DNA (5 revisions)
- Generalization of the second law for a transition between nonequilibrium states (5 revisions)
- Kinetic versus energetic discrimination in biological copying (5 revisions)
- Special Issue titled "The Fuzziness in Molecular, Supramolecular, and Systems Chemistry" of the journal Molecules (MDPI, IF=3.098) (5 revisions)
- Thermodynamics of natural selection II: Chemical Carnot cycles (4 revisions)
- Thermodynamics of natural selection I: Energy flow and the limits on organization (4 revisions)
- The large deviation approach to statistical mechanics (4 revisions)
- Energy as a constraint on the coding and processing of sensory information (4 revisions)
- Renaud Jolivet (4 revisions)
- Information-theoretic approach to the study of control systems (4 revisions)
- Generalization of the second law for a nonequilibrium initial state (4 revisions)
- A cost/speed/reliability tradeoff to erasing (4 revisions)
- Hong Qian (4 revisions)
- Fluctuation theorem for nonequilibrium reactions (4 revisions)
- Experimental verification of Landauer's principle linking information and thermodynamics (4 revisions)
- The energy-speed-accuracy trade-off in sensory adaptation (4 revisions)
- The metabolic cost of neural information (4 revisions)
- Metabolically efficient information processing. (4 revisions)
- Finite-time erasing of information stored in fermionic bits (4 revisions)
- Use of mutual information to decrease entropy: Implications for the second law of thermodynamics (4 revisions)
- Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon (4 revisions)
- Elements of Information Theory 2nd Edition (4 revisions)
- Thermodynamics of a physical model implementing a Maxwell demon (4 revisions)
- High-precision test of Landauer's principle in a feedback trap (4 revisions)
- Minimal energy cost for thermodynamic information processing: Measurement and information erasure (4 revisions)
- Thermodynamics with continuous information flow (4 revisions)
- Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics (4 revisions)
- Universal features in the energetics of symmetry breaking (4 revisions)
- The physics of forgetting: Landauer's erasure principle and information theory (4 revisions)
- Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina (4 revisions)
- Thermodynamics of prediction (4 revisions)
- Stochastic thermodynamics under coarse graining (4 revisions)
- Conservative logic (4 revisions)
- DNA as a universal substrate for chemical kinetics (Extended Abstract) (4 revisions)
- Laser cooling of atoms (3 revisions)
- Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru (3 revisions)
- Stochastic thermodynamics Selforganization by Nonlinear Irreversible Processes (3 revisions)
- Computational Complexity: A Modern Approach (3 revisions)
- Notes on the history of reversible computation (3 revisions)
- Modeling Maxwell's demon with a microcanonical Szilard engine (3 revisions)
- A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes (3 revisions)
- Triggered amplification by hybridization chain reaction (3 revisions)
- Thermodynamics and an Introduction to Thermostatistics, 2nd ed. (3 revisions)
- Polynomial time algorithms for discrete logarithms and factoring on a quantum computer (3 revisions)
- Andy Adamatzky (3 revisions)
- Massimiliano Esposito (3 revisions)
- Work and information processing in a solvable model of Maxwell's demon (3 revisions)
- James Crutchfield (3 revisions)
- Chris Kempes (3 revisions)
- Peter Stadler (3 revisions)
- William Bialek (3 revisions)
- Shamit Shrivastava (3 revisions)
- Naftali Tishby (3 revisions)
- Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch (3 revisions)
- Pieter Rein ten Wolde (3 revisions)
- Udo Seifert (3 revisions)
- Terry Sejnowski (3 revisions)
- Computation with finite stochastic chemical reaction networks (3 revisions)
- A Note on Bennett’s Time-Space Tradeoff for Reversible Computation (3 revisions)
- Information and flux in a feedback controlled Brownian ratchet (3 revisions)
- Time and space bounds for reversible simulation (3 revisions)
- Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements (3 revisions)
- Thermodynamics of feedback controlled systems (3 revisions)
- Three faces of the second law. I. Master equation formulation (3 revisions)
- Memory erasure in small systems (3 revisions)
- One-dimensional shift of a brownian particle under the feedback control (3 revisions)
- Stochastic thermodynamics for Maxwell demon feedbacks (3 revisions)
- Entropy production for mechanically or chemically driven biomolecules (3 revisions)
- Designing optimal discrete-feedback thermodynamic engines (3 revisions)
- Programmable ligand-controlled riboregulators of eukaryotic gene expression (3 revisions)
- Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium (3 revisions)
- John Rundle (3 revisions)
- Feedback control in a collective flashing ratchet (3 revisions)
- Entropy Production of Brownian Macromolecules with Inertia (3 revisions)
- Energy limitation as a selective pressure on the evolution of sensory systems (3 revisions)
- Fluctuation theorems for quantum processes (3 revisions)
- Cognitive Computing - Merging Concepts with Hardware (3 revisions)
- Spontaneous evolution of modularity and network motifs (3 revisions)
- Modular verification of chemical reaction network encodings via serializability analysis (3 revisions)
- Holevo's bound from a general quantum fluctuation theorem (3 revisions)
- Generalized Jarzynski equality under nonequilibrium feedback control (3 revisions)
- Extracting work from a single heat bath through feedback (3 revisions)
- Maxwell's demon in biochemical signal transduction with feedback loop (3 revisions)
- Stochastic thermodynamics of bipartite systems: Transfer entropy inequalities and a Maxwell's demon interpretation (3 revisions)
- Efficiency of cellular information processing (3 revisions)
- Thermodynamic Costs of Information Processing in Sensory Adaptation (3 revisions)
- Postdoc in stochastic thermodynamics of molecular machines (3 revisions)
- A rigorous derivation of the chemical master equation (3 revisions)
- Nonequilibrium detailed fluctuation theorem for repeated discrete feedback (3 revisions)
- Jarzynski equality modified in the linear feedback system (3 revisions)
- Brownian motors: Noisy transport far from equilibrium (3 revisions)
- Nonequilibrium fluctuations in small systems: from physics to biology (2 revisions)
- Stochastic thermodynamics: principles and perspectives (2 revisions)
- Notes on Landauer's principle, reversible computation, and Maxwell's Demon (2 revisions)
- The energy expansions of evolution (2 revisions)
- Heat generation required by information erasure (2 revisions)
- The free energy requirements of biological organisms; implications for evolution (2 revisions)
- The Use of Information Theory in Evolutionary Biology (2 revisions)
- Evidence for early life in Earth's oldest hydrothermal vent precipitates (2 revisions)
- Ilya Nemenman (2 revisions)
- Gavin Crooks (2 revisions)
- Christopher Jarzynski (2 revisions)
- David Sivak (2 revisions)
- How much non-coding DNA do eukaryotes require? (2 revisions)
- Limits of sensing temporal concentration changes by single cells (2 revisions)
- Takahiro Sagawa (2 revisions)
- Wojciech H. Zurek (2 revisions)
- Early metazoan life: divergence, environment and ecology (2 revisions)
- Stochasticity of gene products from transcriptional pulsing (2 revisions)
- Analog Computation by DNA Strand Displacement Circuits (2 revisions)
- Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach (2 revisions)
- Erik Winfree (2 revisions)
- The Energy Use Associated with Neural Computation in the Cerebellum (2 revisions)
- Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life (2 revisions)
- Energy balance for analysis of complex metabolic networks. (2 revisions)
- An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle (2 revisions)
- How Far is Complex Balancing from Detailed Balancing? (2 revisions)
- Janet Anders (2 revisions)
- Nihat Ay (2 revisions)
- Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver. (2 revisions)
- Aviv Bergman (2 revisions)
- Carl T. Bergstrom (2 revisions)
- Benjamin Machta (2 revisions)
- Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations (2 revisions)
- A general model for the structure and allometry of plant vascular systems (2 revisions)
- An estimate of the total DNA in the biosphere (2 revisions)
- John C. Doyle (2 revisions)
- Cooperativity, sensitivity, and noise in biochemical signaling (2 revisions)
- Chemical implementation of finite-state machines (2 revisions)
- A quantitative comparison of sRNA-based and protein-based gene regulation (2 revisions)
- Synergism between different germinant receptors in the germination of Bacillus subtilis spores (2 revisions)
- On the decrease of entropy in a thermodynamic system by the intervention of intelligent beings (2 revisions)
- Necessary and sufficient conditions for complex balancing in chemical kinetics (2 revisions)
- Physics of chemoreception (2 revisions)
- System wide analyses have underestimated protein abundances and the importance of transcription in mammals (2 revisions)
- Probing the Limits to Positional Information (2 revisions)
- Specificity in Two-Component Signal Transduction Pathways (2 revisions)
- The energetics of genome complexity (2 revisions)
- Kinetics and thermodynamics of amyloid formation from direct measurements of fluctuations in fibril mass (2 revisions)
- The thermodynamic meaning of negative entropy (2 revisions)
- Energy dissipation in an adaptive molecular circuit (2 revisions)
- Thermodynamics of natural selection III: Landauer's principle in computation and chemistry (2 revisions)
- Minimal energy requirements in communication (2 revisions)
- Self-organization and entropy reduction in a living cell (2 revisions)
- Maximum likelihood and the single receptor (2 revisions)
- Transitions from Nonliving to Living Matter (2 revisions)
- Two approaches for metabolic pathway analysis? (2 revisions)
- A general model for ontogenetic growth (2 revisions)
- Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction (2 revisions)
- Dissipation-error tradeoff in proofreading (2 revisions)
- Drivers of bacterial maintenance and minimal energy requirements (2 revisions)
- The physical nature of information (2 revisions)
- A master equation description of local fluctuations (2 revisions)
- Glucans monomer-exchange dynamics as an open chemical network (2 revisions)
- Physical limits on cellular sensing of spatial gradients. (2 revisions)
- Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity (2 revisions)
- A "fast growth" method of computing free energy differences (2 revisions)
- Quantum techniques for studying equilibrium in reaction networks (2 revisions)
- Accuracy of direct gradient sensing by cell-surface receptors (2 revisions)
- On r- and K-Selection (2 revisions)
- Optimal resource allocation in cellular sensing systems (2 revisions)
- The berg-purcell limit revisited (2 revisions)
- A quantitative estimation of the global translational activity in logarithmically growing yeast cells (2 revisions)
- The minimal work cost of information processing (2 revisions)
- Information thermodynamics of near-equilibrium computation (2 revisions)
- Genome sizes and the benford distribution (2 revisions)
- Regulation of cell size in the yeast Saccharomyces cerevisiae. (2 revisions)
- Energy flows in low-entropy complex systems (2 revisions)
- An informational process based on reversible universal cellular automata (2 revisions)
- Nonequilibrium Measurements of Free Energy Differences for Microscopically Reversible Markovian Systems (2 revisions)
- Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate (2 revisions)
- Entropy involved in fidelity of DNA replication (2 revisions)
- An analytical solution to the kinetics of breakable filament assembly (2 revisions)
- Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models (2 revisions)
- Self-regulating gene: An exact solution (2 revisions)
- The bioenergetic costs of a gene (2 revisions)
- Eukaryotic organisms in Proterozoic oceans (2 revisions)
- Stoichiometric network theory for nonequilibrium biochemical systems (2 revisions)
- Open Markov Processes and Open Reaction Networks (2 revisions)
- Ultimate physical limits to computation (2 revisions)
- Stability and Complex Balancing in Mass-Action Systems with Three Short Complexes (2 revisions)
- The relationship between stochastic and deterministic models for chemical reactions (2 revisions)
- Thermodynamic cost of computation, algorithmic complexity and the information metric (2 revisions)
- Invertible cellular automata: A review (2 revisions)
- On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution (2 revisions)
- Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics (2 revisions)
- Generalizing Landauer's principle (2 revisions)