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Thermodynamics of Computation

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  1. Karpur Shukla‏‎ (47 revisions)
  2. Michael Frank‏‎ (26 revisions)
  3. Thermodynamics of Computation:Reference group/Allowed values‏‎ (17 revisions)
  4. Entropy production along a stochastic trajectory and an integral fluctuation theorem‏‎ (14 revisions)
  5. Sadasivan Shankar‏‎ (14 revisions)
  6. Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences‏‎ (12 revisions)
  7. Logical Reversibility of Computation‏‎ (12 revisions)
  8. Stochastic thermodynamics, fluctuation theorems and molecular machines‏‎ (11 revisions)
  9. Fluctuation theorems for stochastic dynamics‏‎ (11 revisions)
  10. Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach‏‎ (10 revisions)
  11. Main Page‏‎ (9 revisions)
  12. A Gallavotti Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics‏‎ (9 revisions)
  13. Quantum fluctuation relations: foundations and applications‏‎ (8 revisions)
  14. Work and heat probability distributions in out-of-equilibrium systems‏‎ (8 revisions)
  15. Steady state thermodynamics‏‎ (8 revisions)
  16. Petrosyan A 2010 Fluctuations in out-of-equilibrium systems: from theory to experiment J. Stat‏‎ (8 revisions)
  17. Nonequilibrium equality for free energy differences‏‎ (8 revisions)
  18. Irreversibility and Heat Generation in the Computing Process‏‎ (8 revisions)
  19. Thermodynamics (Hoboken‏‎ (7 revisions)
  20. Nonequilibrium generation of information in copolymerization processes.‏‎ (7 revisions)
  21. Second law and Landauer principle far from equilibrium‏‎ (7 revisions)
  22. The thermodynamics of computation-a review‏‎ (7 revisions)
  23. Equilibrium microstates which generate second law violating steady states‏‎ (6 revisions)
  24. Handbook of stochastic methods for physics, chemistry and the natural sciences‏‎ (6 revisions)
  25. The mesoscopic dynamics of thermodynamic systems‏‎ (6 revisions)
  26. Langevin Equation and Thermodynamics‏‎ (6 revisions)
  27. Non-equilibrium work relations‏‎ (6 revisions)
  28. Probability of second law violations in shearing steady states‏‎ (6 revisions)
  29. The Nonequilibrium Thermodynamics of Small Systems‏‎ (6 revisions)
  30. Quantum entropy production as a measure of irreversibility‏‎ (6 revisions)
  31. On the Origin and the Use of Fluctuation Relations for the Entropy‏‎ (6 revisions)
  32. Erratum: Nonequilibrium fluctuations, fluctuation theorems, and counting statistics in quantum systems‏‎ (6 revisions)
  33. Dynamical ensembles in nonequilibrium statistical mechanics‏‎ (6 revisions)
  34. Open-system nonequilibrium steady state: Statistical thermodynamics, fluctuations, and chemical oscillations‏‎ (6 revisions)
  35. General theory of thermal fluctuations in nonlinear systems‏‎ (6 revisions)
  36. Fluctuation Theorems‏‎ (6 revisions)
  37. Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation‏‎ (6 revisions)
  38. Reviews of nonlinear dynamics and complexity Nonequilibrium Statistical Physics of Small Systems: Fluctuation Relations and Beyond (Weinheim: Wiley-VCH)‏‎ (6 revisions)
  39. Irreversibility and the second law of thermodynamics at the nanoscale‏‎ (6 revisions)
  40. Free energy reconstruction from nonequilibrium single-molecule pulling experiments.‏‎ (6 revisions)
  41. Path-ensemble averages in systems driven far from equilibrium‏‎ (6 revisions)
  42. Is it possible to experimentally verify the fluctuation relation? A review of theoretical motivations and numerical evidence‏‎ (6 revisions)
  43. Path integrals with generalized Grassmann variables‏‎ (6 revisions)
  44. Steady-state thermodynamics of Langevin systems‏‎ (6 revisions)
  45. Thermodynamics 3rd enlarged edn‏‎ (6 revisions)
  46. Mechanics of Nonequilibrium Liquids 2nd edn‏‎ (6 revisions)
  47. Non-equilibrium statistical mechanics: From a paradigmatic model to biological transport‏‎ (6 revisions)
  48. Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. II. Kinetic potential and variational principles for nonlinear irreversible processes‏‎ (6 revisions)
  49. Theory for non-equilibrium statistical mechanics.‏‎ (6 revisions)
  50. Fluctuation theorem for stochastic dynamics‏‎ (6 revisions)
  51. Kinetic Characterization of Heat Bath and the Energetics of Thermal Ratchet Models‏‎ (6 revisions)
  52. Brownian motion: A paradigm of soft matter and biological physics‏‎ (6 revisions)
  53. The Fluctuation Theorem‏‎ (6 revisions)
  54. Elements of Information Theory‏‎ (6 revisions)
  55. Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale‏‎ (6 revisions)
  56. Stochastic thermodynamics of nonequilibrium steady states in chemical reaction systems‏‎ (5 revisions)
  57. Theory of Nonequilibrium Steady States‏‎ (5 revisions)
  58. Thermodynamics of information‏‎ (5 revisions)
  59. Vijay Balasubramanian‏‎ (5 revisions)
  60. Special Issue titled "The Fuzziness in Molecular, Supramolecular, and Systems Chemistry" of the journal Molecules (MDPI, IF=3.098)‏‎ (5 revisions)
  61. Generalization of the second law for a transition between nonequilibrium states‏‎ (5 revisions)
  62. Kinetic Proofreading: A New Mechanism for Reducing Errors in Biosynthetic Processes Requiring High Specificity‏‎ (5 revisions)
  63. Kinetic versus energetic discrimination in biological copying‏‎ (5 revisions)
  64. A DNA-fuelled molecular machine made of DNA‏‎ (5 revisions)
  65. Experimental demonstration of information-to-energy conversion and validation of the generalized Jarzynski equality‏‎ (5 revisions)
  66. Test page‏‎ (5 revisions)
  67. Generalized detailed fluctuation theorem under nonequilibrium feedback control‏‎ (5 revisions)
  68. Thermodynamics of natural selection II: Chemical Carnot cycles‏‎ (4 revisions)
  69. Thermodynamics of natural selection I: Energy flow and the limits on organization‏‎ (4 revisions)
  70. The large deviation approach to statistical mechanics‏‎ (4 revisions)
  71. Energy as a constraint on the coding and processing of sensory information‏‎ (4 revisions)
  72. Engineering aspects of enzymatic signal transduction: Photoreceptors in the retina‏‎ (4 revisions)
  73. Experimental observation of the role of mutual information in the nonequilibrium dynamics of a Maxwell demon‏‎ (4 revisions)
  74. Hong Qian‏‎ (4 revisions)
  75. Elements of Information Theory 2nd Edition‏‎ (4 revisions)
  76. Fluctuation theorem with information exchange: Role of correlations in stochastic thermodynamics‏‎ (4 revisions)
  77. High-precision test of Landauer's principle in a feedback trap‏‎ (4 revisions)
  78. Universal features in the energetics of symmetry breaking‏‎ (4 revisions)
  79. Stochastic thermodynamics under coarse graining‏‎ (4 revisions)
  80. DNA as a universal substrate for chemical kinetics (Extended Abstract)‏‎ (4 revisions)
  81. A cost/speed/reliability tradeoff to erasing‏‎ (4 revisions)
  82. The metabolic cost of neural information‏‎ (4 revisions)
  83. Thermodynamics of a physical model implementing a Maxwell demon‏‎ (4 revisions)
  84. Generalization of the second law for a nonequilibrium initial state‏‎ (4 revisions)
  85. Use of mutual information to decrease entropy: Implications for the second law of thermodynamics‏‎ (4 revisions)
  86. Finite-time erasing of information stored in fermionic bits‏‎ (4 revisions)
  87. Metabolically efficient information processing.‏‎ (4 revisions)
  88. Minimal energy cost for thermodynamic information processing: Measurement and information erasure‏‎ (4 revisions)
  89. Thermodynamics with continuous information flow‏‎ (4 revisions)
  90. Thermodynamics of prediction‏‎ (4 revisions)
  91. The physics of forgetting: Landauer's erasure principle and information theory‏‎ (4 revisions)
  92. Experimental verification of Landauer's principle linking information and thermodynamics‏‎ (4 revisions)
  93. Information-theoretic approach to the study of control systems‏‎ (4 revisions)
  94. Fluctuation theorem for nonequilibrium reactions‏‎ (4 revisions)
  95. Conservative logic‏‎ (4 revisions)
  96. Renaud Jolivet‏‎ (4 revisions)
  97. The energy-speed-accuracy trade-off in sensory adaptation‏‎ (4 revisions)
  98. Laser cooling of atoms‏‎ (3 revisions)
  99. Reprint of: Digital and spatial knowledge management in urban governance: Emerging issues in India, Brazil, South Africa, and Peru‏‎ (3 revisions)
  100. Stochastic thermodynamics Selforganization by Nonlinear Irreversible Processes‏‎ (3 revisions)
  101. Computational Complexity: A Modern Approach‏‎ (3 revisions)
  102. Notes on the history of reversible computation‏‎ (3 revisions)
  103. Massimiliano Esposito‏‎ (3 revisions)
  104. John Rundle‏‎ (3 revisions)
  105. James Crutchfield‏‎ (3 revisions)
  106. Chris Kempes‏‎ (3 revisions)
  107. Peter Stadler‏‎ (3 revisions)
  108. William Bialek‏‎ (3 revisions)
  109. Naftali Tishby‏‎ (3 revisions)
  110. Pieter Rein ten Wolde‏‎ (3 revisions)
  111. Udo Seifert‏‎ (3 revisions)
  112. Terry Sejnowski‏‎ (3 revisions)
  113. Thermodynamics and an Introduction to Thermostatistics, 2nd ed.‏‎ (3 revisions)
  114. Thermodynamic Costs of Information Processing in Sensory Adaptation‏‎ (3 revisions)
  115. Efficiency of cellular information processing‏‎ (3 revisions)
  116. Entropy production for mechanically or chemically driven biomolecules‏‎ (3 revisions)
  117. Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch‏‎ (3 revisions)
  118. Energy limitation as a selective pressure on the evolution of sensory systems‏‎ (3 revisions)
  119. A Note on Bennett’s Time-Space Tradeoff for Reversible Computation‏‎ (3 revisions)
  120. Triggered amplification by hybridization chain reaction‏‎ (3 revisions)
  121. Time and space bounds for reversible simulation‏‎ (3 revisions)
  122. Andy Adamatzky‏‎ (3 revisions)
  123. Programmable ligand-controlled riboregulators of eukaryotic gene expression‏‎ (3 revisions)
  124. Modular verification of chemical reaction network encodings via serializability analysis‏‎ (3 revisions)
  125. Nonequilibrium detailed fluctuation theorem for repeated discrete feedback‏‎ (3 revisions)
  126. Brownian motors: Noisy transport far from equilibrium‏‎ (3 revisions)
  127. Fluctuation theorems for quantum processes‏‎ (3 revisions)
  128. Jarzynski equality modified in the linear feedback system‏‎ (3 revisions)
  129. Spontaneous evolution of modularity and network motifs‏‎ (3 revisions)
  130. Holevo's bound from a general quantum fluctuation theorem‏‎ (3 revisions)
  131. Maxwell's demon in biochemical signal transduction with feedback loop‏‎ (3 revisions)
  132. Stochastic thermodynamics of bipartite systems: Transfer entropy inequalities and a Maxwell's demon interpretation‏‎ (3 revisions)
  133. Extracting work from a single heat bath through feedback‏‎ (3 revisions)
  134. Stochastic thermodynamics for Maxwell demon feedbacks‏‎ (3 revisions)
  135. A rigorous derivation of the chemical master equation‏‎ (3 revisions)
  136. Information and flux in a feedback controlled Brownian ratchet‏‎ (3 revisions)
  137. Feedback control in a collective flashing ratchet‏‎ (3 revisions)
  138. Work and information processing in a solvable model of Maxwell's demon‏‎ (3 revisions)
  139. One-dimensional shift of a brownian particle under the feedback control‏‎ (3 revisions)
  140. Thermodynamics of feedback controlled systems‏‎ (3 revisions)
  141. Computation with finite stochastic chemical reaction networks‏‎ (3 revisions)
  142. Design of 1-tape 2-symbol reversible Turing machines based on reversible logic elements‏‎ (3 revisions)
  143. Cognitive Computing - Merging Concepts with Hardware‏‎ (3 revisions)
  144. Polynomial time algorithms for discrete logarithms and factoring on a quantum computer‏‎ (3 revisions)
  145. Modeling Maxwell's demon with a microcanonical Szilard engine‏‎ (3 revisions)
  146. Memory erasure in small systems‏‎ (3 revisions)
  147. Three faces of the second law. I. Master equation formulation‏‎ (3 revisions)
  148. Shamit Shrivastava‏‎ (3 revisions)
  149. Postdoc in stochastic thermodynamics of molecular machines‏‎ (3 revisions)
  150. A Relaxed Min-Sum LDPC Decoder With Simplified Check Nodes‏‎ (3 revisions)
  151. Generalized Jarzynski equality under nonequilibrium feedback control‏‎ (3 revisions)
  152. Designing optimal discrete-feedback thermodynamic engines‏‎ (3 revisions)
  153. Entropy Production of Brownian Macromolecules with Inertia‏‎ (3 revisions)
  154. Energy transduction of isothermal ratchets: Generic aspects and specific examples close to and far from equilibrium‏‎ (3 revisions)
  155. Nonequilibrium fluctuations in small systems: from physics to biology‏‎ (2 revisions)
  156. Stochastic thermodynamics: principles and perspectives‏‎ (2 revisions)
  157. Minimum Description Length Induction , Bayesianism , and Kolmogorov Complexity 1 Introduction‏‎ (2 revisions)
  158. The Use of Information Theory in Evolutionary Biology‏‎ (2 revisions)
  159. The energetics of genome complexity‏‎ (2 revisions)
  160. The energy–speed–accuracy trade-off in sensory adaptation‏‎ (2 revisions)
  161. Thermodynamics of Information Processing in Small Systems‏‎ (2 revisions)
  162. Physics of Self-Organization and Evolution‏‎ (2 revisions)
  163. Dissipation-error tradeoff in proofreading‏‎ (2 revisions)
  164. Stochastic thermodynamics: A brief introduction‏‎ (2 revisions)
  165. Thermodynamics of Computational Copying in Biochemical Systems‏‎ (2 revisions)
  166. Drivers of bacterial maintenance and minimal energy requirements‏‎ (2 revisions)
  167. How much non-coding DNA do eukaryotes require?‏‎ (2 revisions)
  168. Entropy involved in fidelity of DNA replication‏‎ (2 revisions)
  169. Nonequilibrium Measurements of Free Energy Differences for Microscopically Reversible Markovian Systems‏‎ (2 revisions)
  170. Joshua A. Grochow‏‎ (2 revisions)
  171. Thomas Ouldrige‏‎ (2 revisions)
  172. Anne Condon‏‎ (2 revisions)
  173. Riccardo Zecchina‏‎ (2 revisions)
  174. Ilya Nemenman‏‎ (2 revisions)
  175. Gavin Crooks‏‎ (2 revisions)
  176. Christopher Jarzynski‏‎ (2 revisions)
  177. David Sivak‏‎ (2 revisions)
  178. Gašper Tkačik‏‎ (2 revisions)
  179. A fast quantum mechanical algorithm for database search‏‎ (2 revisions)
  180. Takahiro Sagawa‏‎ (2 revisions)
  181. Wojciech H. Zurek‏‎ (2 revisions)
  182. Reversible electronic logic using switches‏‎ (2 revisions)
  183. Analog Computation by DNA Strand Displacement Circuits‏‎ (2 revisions)
  184. Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach‏‎ (2 revisions)
  185. Erik Winfree‏‎ (2 revisions)
  186. The Energy Use Associated with Neural Computation in the Cerebellum‏‎ (2 revisions)
  187. Janet Anders‏‎ (2 revisions)
  188. Nihat Ay‏‎ (2 revisions)
  189. Aviv Bergman‏‎ (2 revisions)
  190. Carl T. Bergstrom‏‎ (2 revisions)
  191. Benjamin Machta‏‎ (2 revisions)
  192. On Some New Families of Almost Difference Sets Constructed From Cyclotomic Classes of Order 12‏‎ (2 revisions)
  193. John C. Doyle‏‎ (2 revisions)
  194. Carlton M. Caves‏‎ (2 revisions)
  195. A measure for brain complexity: relating functional segregation and integration in the nervous system.‏‎ (2 revisions)
  196. Fluctuations and irreversible processes‏‎ (2 revisions)
  197. Necessary and sufficient conditions for complex balancing in chemical kinetics‏‎ (2 revisions)
  198. The free energy requirements of biological organisms; implications for evolution‏‎ (2 revisions)
  199. On the decrease of entropy in a thermodynamic system by the intervention of intelligent beings‏‎ (2 revisions)
  200. Addressing the wicked problem of quality in higher education: theoretical approaches and implications‏‎ (2 revisions)
  201. Kinetics and thermodynamics of amyloid formation from direct measurements of fluctuations in fibril mass‏‎ (2 revisions)
  202. Optimal resource allocation in cellular sensing systems‏‎ (2 revisions)
  203. Thermodynamics of natural selection III: Landauer's principle in computation and chemistry‏‎ (2 revisions)
  204. Self-organization and entropy reduction in a living cell‏‎ (2 revisions)
  205. Maximum likelihood and the single receptor‏‎ (2 revisions)
  206. Physical limits on cellular sensing of spatial gradients.‏‎ (2 revisions)
  207. A master equation description of local fluctuations‏‎ (2 revisions)
  208. Darwinian demons, evolutionary complexity, and information maximization‏‎ (2 revisions)
  209. Information thermodynamics of near-equilibrium computation‏‎ (2 revisions)
  210. Notes on Landauer's principle, reversible computation, and Maxwell's Demon‏‎ (2 revisions)
  211. Genome sizes and the benford distribution‏‎ (2 revisions)
  212. Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction‏‎ (2 revisions)
  213. The berg-purcell limit revisited‏‎ (2 revisions)
  214. Energy balance for analysis of complex metabolic networks.‏‎ (2 revisions)
  215. Eukaryotic organisms in Proterozoic oceans‏‎ (2 revisions)
  216. Ultimate physical limits to computation‏‎ (2 revisions)
  217. Stability and Complex Balancing in Mass-Action Systems with Three Short Complexes‏‎ (2 revisions)
  218. The relationship between stochastic and deterministic models for chemical reactions‏‎ (2 revisions)
  219. Energy flows in low-entropy complex systems‏‎ (2 revisions)
  220. A generalization of Wegscheider's condition. Implications for properties of steady states and for quasi-steady-state approximation‏‎ (2 revisions)
  221. Algorithmic randomness and physical entropy‏‎ (2 revisions)
  222. How Far is Complex Balancing from Detailed Balancing?‏‎ (2 revisions)
  223. Transfer entropy and transient limits of computation‏‎ (2 revisions)
  224. The Gibbs paradox‏‎ (2 revisions)
  225. Growth, metabolic partitioning, and the size of microorganisms‏‎ (2 revisions)
  226. Chemical kinetics is turing universal‏‎ (2 revisions)
  227. Thermodynamic cost of computation, algorithmic complexity and the information metric‏‎ (2 revisions)
  228. An informational process based on reversible universal cellular automata‏‎ (2 revisions)
  229. Challenges for complexity measures: A perspective from social dynamics and collective social computation‏‎ (2 revisions)
  230. A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks‏‎ (2 revisions)
  231. Sebastian Deffner‏‎ (2 revisions)
  232. Information, Physics, and Computation‏‎ (2 revisions)
  233. The theory of island biogeography‏‎ (2 revisions)
  234. The nonequilibrium mechanism for ultrasensitivity in a biological switch: Sensing by Maxwell's demons‏‎ (2 revisions)
  235. Low-Power Digital Systems Based on Adiabatic-Switching Principles‏‎ (2 revisions)
  236. Models of Computation: Exploring the Power of Computing‏‎ (2 revisions)
  237. The cell cycle switch computes approximate majority‏‎ (2 revisions)
  238. Time/Space Trade-Offs for Reversible Computation‏‎ (2 revisions)
  239. A Sampling of the Yeast Proteome‏‎ (2 revisions)
  240. An analytical solution to the kinetics of breakable filament assembly‏‎ (2 revisions)
  241. Analog Versus Digital: Extrapolating from Electronics to Neurobiology‏‎ (2 revisions)
  242. Susan Fitzpatrick‏‎ (2 revisions)
  243. Stably computable predicates are semilinear‏‎ (2 revisions)
  244. An Introduction to Kolmogorov Complexity and Its Applications‏‎ (2 revisions)
  245. Manoj Gopalkrishnan‏‎ (2 revisions)
  246. Efficient randomized pattern-matching algorithms‏‎ (2 revisions)
  247. A "fast growth" method of computing free energy differences‏‎ (2 revisions)
  248. Control of DNA strand displacement kinetics using toehold exchange‏‎ (2 revisions)
  249. Measuring information integration‏‎ (2 revisions)
  250. Nonequilibrium steady-state fluctuations in actively cooled resonators‏‎ (2 revisions)
  251. A quantitative comparison of sRNA-based and protein-based gene regulation‏‎ (2 revisions)
  252. Synergism between different germinant receptors in the germination of Bacillus subtilis spores‏‎ (2 revisions)
  253. Cooperativity, sensitivity, and noise in biochemical signaling‏‎ (2 revisions)
  254. Complexity, entropy and the physics of information‏‎ (2 revisions)
  255. Information-theoretic lower bound on energy cost of stochastic computation‏‎ (2 revisions)
  256. An estimate of the total DNA in the biosphere‏‎ (2 revisions)
  257. System wide analyses have underestimated protein abundances and the importance of transcription in mammals‏‎ (2 revisions)
  258. Early metazoan life: divergence, environment and ecology‏‎ (2 revisions)
  259. Probing the Limits to Positional Information‏‎ (2 revisions)
  260. Complex and detailed balancing of chemical reaction networks revisited‏‎ (2 revisions)
  261. Specificity in Two-Component Signal Transduction Pathways‏‎ (2 revisions)
  262. Evidence for early life in Earth's oldest hydrothermal vent precipitates‏‎ (2 revisions)
  263. Physics of chemoreception‏‎ (2 revisions)
  264. The thermodynamic meaning of negative entropy‏‎ (2 revisions)
  265. The physical nature of information‏‎ (2 revisions)
  266. Energy dissipation in an adaptive molecular circuit‏‎ (2 revisions)
  267. Minimal energy requirements in communication‏‎ (2 revisions)
  268. The energy relay: a proofreading scheme based on dynamic cooperativity and lacking all characteristic symptoms of kinetic proofreading in DNA replication and protein synthesis.‏‎ (2 revisions)
  269. A general model for ontogenetic growth‏‎ (2 revisions)
  270. Transitions from Nonliving to Living Matter‏‎ (2 revisions)
  271. Glucans monomer-exchange dynamics as an open chemical network‏‎ (2 revisions)
  272. Accuracy of direct gradient sensing by cell-surface receptors‏‎ (2 revisions)
  273. On r- and K-Selection‏‎ (2 revisions)
  274. Limits of sensing temporal concentration changes by single cells‏‎ (2 revisions)
  275. Self-regulating gene: An exact solution‏‎ (2 revisions)
  276. Workshop report:Modeling the molecularmechanism of bacterial spore germination and elucidating reasons for germination heterogeneity‏‎ (2 revisions)
  277. Stochasticity of gene products from transcriptional pulsing‏‎ (2 revisions)
  278. An information theoretical analysis of kinase activated phosphorylation dephosphorylation cycle‏‎ (2 revisions)
  279. A general model for the structure and allometry of plant vascular systems‏‎ (2 revisions)
  280. Quantum techniques for studying equilibrium in reaction networks‏‎ (2 revisions)
  281. Two approaches for metabolic pathway analysis?‏‎ (2 revisions)
  282. Chemical implementation of finite-state machines‏‎ (2 revisions)
  283. Shifts in metabolic scaling, production, and efficiency across major evolutionary transitions of life‏‎ (2 revisions)
  284. Regulation of cell size in the yeast Saccharomyces cerevisiae.‏‎ (2 revisions)
  285. Fluctuating currents in stochastic thermodynamics. II. Energy conversion and nonequilibrium response in kinesin models‏‎ (2 revisions)
  286. The energy expansions of evolution‏‎ (2 revisions)
  287. Generalizing Landauer's principle‏‎ (2 revisions)
  288. Life under extreme energy limitation: A synthesis of laboratory- and field-based investigations‏‎ (2 revisions)
  289. Open Markov Processes and Open Reaction Networks‏‎ (2 revisions)
  290. Stoichiometric network theory for nonequilibrium biochemical systems‏‎ (2 revisions)
  291. The bioenergetic costs of a gene‏‎ (2 revisions)
  292. Modulation of Chemical Composition and Other Parameters of the Cell by Growth Rate‏‎ (2 revisions)
  293. A quantitative estimation of the global translational activity in logarithmically growing yeast cells‏‎ (2 revisions)
  294. Invertible cellular automata: A review‏‎ (2 revisions)
  295. Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods, and normal morphometric data for rat liver.‏‎ (2 revisions)
  296. Chemical reaction network theory for in-silico biologists‏‎ (2 revisions)
  297. Information theory, evolution, and the origin of life‏‎ (2 revisions)
  298. Structural sources of robustness in biochemical reaction networks‏‎ (2 revisions)
  299. Innovation in gene regulation: The case of chromatin computation‏‎ (2 revisions)
  300. On the shoulders of giants: Properties of the stellar halo and the milky way mass distribution‏‎ (2 revisions)
  301. Kinetic amplification of enzyme discrimination‏‎ (2 revisions)
  302. Thermodynamic and kinetic analysis of sensitivity amplification in biological signal transduction‏‎ (2 revisions)
  303. The (absence of a) relationship between thermodynamic and logical reversibility‏‎ (2 revisions)
  304. Nonequilibrium thermodynamic formalism of nonlinear chemical reaction systems with Waage-Guldberg's law of mass action‏‎ (2 revisions)
  305. Microbial life under extreme energy limitation‏‎ (2 revisions)
  306. An analog of the Boltzmann H-theorem (a Liapunov function) for systems of coupled chemical reactions‏‎ (2 revisions)
  307. Proliferation of amyloid- 42 aggregates occurs through a secondary nucleation mechanism‏‎ (2 revisions)
  308. Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics‏‎ (2 revisions)
  309. Heat generation required by information erasure‏‎ (2 revisions)
  310. Protein accumulation in the endoplasmic reticulum as a non-equilibrium phase transition‏‎ (2 revisions)
  311. Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints‏‎ (2 revisions)
  312. On thermodynamic interpretation of transfer entropy‏‎ (2 revisions)
  313. Thermodynamic constraints for biochemical networks‏‎ (2 revisions)
  314. Body size and metabolic rate.‏‎ (2 revisions)
  315. Defining genes: A computational framework‏‎ (2 revisions)
  316. Statistical physics of a model binary genetic switch with linear feedback‏‎ (2 revisions)
  317. Information Theory, Inference and Learning Algorithms‏‎ (2 revisions)
  318. Santa Fe Institute Post-Doctoral‏‎ (2 revisions)
  319. Paul Davies‏‎ (2 revisions)
  320. Ubiquity of Benford's law and emergence of the reciprocal distribution‏‎ (2 revisions)
  321. A general model for the origin of allometric scaling laws in biology‏‎ (2 revisions)
  322. Evolutionary tradeoffs in cellular composition across diverse bacteria‏‎ (2 revisions)
  323. Maxwell's demon and quantum-dot cellular automata‏‎ (2 revisions)
  324. An introduction to thermodynamics and statistical mechanics‏‎ (2 revisions)
  325. End of Moore's law: Thermal (noise) death of integration in micro and nano electronics‏‎ (2 revisions)
  326. Helical logic‏‎ (2 revisions)
  327. On the complexity of the parity argument and other inefficient proofs of existence‏‎ (2 revisions)
  328. Enzyme-free nucleic acid logic circuits‏‎ (2 revisions)
  329. Two-Domain DNA Strand Displacement‏‎ (2 revisions)
  330. Power- constrained CMOS scaling limits‏‎ (2 revisions)
  331. Quantum mechanical computers‏‎ (2 revisions)
  332. Introduction to the Theory of Computation‏‎ (2 revisions)
  333. Reverse Update: A Consistent Policy Update Scheme for Software-Defined Networking‏‎ (2 revisions)
  334. Entropy 2018‏‎ (2 revisions)
  335. Fundamental Costs in the Production and Destruction of Persistent Polymer Copies‏‎ (2 revisions)
  336. Fluctuation theorems for a molecular refrigerator‏‎ (2 revisions)
  337. The minimal work cost of information processing‏‎ (2 revisions)
  338. Asymptotically Zero Energy Computing Split-Level Charge Recovery Logic‏‎ (2 revisions)
  339. Reversibility for efficient computing‏‎ (2 revisions)
  340. Michael Deweese‏‎ (2 revisions)
  341. Reversible space equals deterministic space‏‎ (2 revisions)
  342. DNA COMPUTING‏‎ (2 revisions)
  343. Jeremy England‏‎ (2 revisions)
  344. Mikhail Prokopenko‏‎ (2 revisions)
  345. Reducibility among combinatorial problems‏‎ (2 revisions)
  346. David Doty‏‎ (2 revisions)
  347. Classical and quantum limitations on energy consumption in computation‏‎ (2 revisions)
  348. Experimental demonstration of a latch in clocked quantum-dot cellular automata‏‎ (2 revisions)
  349. Pier Luigi Gentili‏‎ (2 revisions)
  350. Zhiyue Lu‏‎ (2 revisions)
  351. Blake Pollard‏‎ (2 revisions)
  352. Holographic Second Laws of Black Hole Thermodynamics‏‎ (2 revisions)
  353. A Cost / Speed / Reliability Trade-off in Erasing a Bit‏‎ (2 revisions)
  354. Postdoc position in DNA replication‏‎ (2 revisions)
  355. Paul Vitanyi‏‎ (2 revisions)
  356. Programmable chemical controllers made from DNA‏‎ (2 revisions)
  357. Length of time's arrow‏‎ (2 revisions)
  358. Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme‏‎ (2 revisions)
  359. Reversible Simulation of Irreversible Computation by Pebble Games‏‎ (2 revisions)
  360. Mej´ıa-Monasterio C 2007 Fluctuations in nonequilibrium statistical mechanics: models‏‎ (1 revision)
  361. STRAUSS: Spectral Transform Use in Stochastic Circuit Synthesis‏‎ (1 revision)
  362. Recent Development in Efficient Adiabatic Logic Circuits and Power Analysis with CMOS Logic‏‎ (1 revision)
  363. Lenka Zdeborová‏‎ (1 revision)
  364. Marc Mézard‏‎ (1 revision)
  365. Deterministic Function Computation with Chemical Reaction Network‏‎ (1 revision)
  366. Chemical Reaction Networks for Computing Polynomials‏‎ (1 revision)
  367. Energy use constrains brain information processing‏‎ (1 revision)
  368. Simon Laughlin‏‎ (1 revision)
  369. Scott Aaronson‏‎ (1 revision)
  370. Dorit Aharonov‏‎ (1 revision)
  371. Artemy Kolchinsky‏‎ (1 revision)
  372. Andre Barato‏‎ (1 revision)
  373. Alec Boyd‏‎ (1 revision)
  374. Rory Brittain‏‎ (1 revision)
  375. Efficiency at maximum power: An analytically solvable model for stochastic heat engines‏‎ (1 revision)
  376. Probing molecular free energy landscapes by periodic loading‏‎ (1 revision)
  377. Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality‏‎ (1 revision)
  378. Fluctuation theorem for a single enzym or molecular motor‏‎ (1 revision)
  379. Nonequilibrium thermodynamics of stochastic systems with odd and even variables‏‎ (1 revision)
  380. Constrained maximal power in small engines‏‎ (1 revision)
  381. A field-theoretic approach to non-equilibrium work identities‏‎ (1 revision)
  382. Universal aspects of the chemomechanical coupling for molecular motors‏‎ (1 revision)
  383. Optimized free energies from bidirectional single-molecule force spectroscopy‏‎ (1 revision)
  384. Nonequilibrium steady state of a nanometric biochemical system: Determining the thermodynamic driving force from single enzyme turnover time traces‏‎ (1 revision)
  385. Thermoelectric efficiency at maximum power in a quantum dot‏‎ (1 revision)
  386. Minimal model for Brownian vortexes‏‎ (1 revision)
  387. A temperature-extended Jarzynski relation: Application to the numerical calculation of surface tension‏‎ (1 revision)
  388. An Example of a Mechanical System whose Ensemble Average Energy, Starting with a Microcanonical Ensemble, Decreases after an Operation‏‎ (1 revision)
  389. Invariant quantities in shear flow‏‎ (1 revision)
  390. Experimental study of the fluctuation theorem in a nonequilibrium steady state‏‎ (1 revision)
  391. Entropy production in a mesoscopic chemical reaction system with oscillatory and excitable dynamics‏‎ (1 revision)
  392. Efficient measurement of linear susceptibilities in molecular simulations: Application to aging supercooled liquids‏‎ (1 revision)
  393. Entropy Production in Nonequilibrium Systems at Stationary States‏‎ (1 revision)
  394. Nonlinear fluctuation-dissipation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem‏‎ (1 revision)
  395. Fluctuations of the total entropy production in stochastic systems‏‎ (1 revision)
  396. Entropy production theorems and some consequences‏‎ (1 revision)
  397. Recovery of state-specific potential of molecular motor from single-molecule trajectory‏‎ (1 revision)
  398. Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States‏‎ (1 revision)
  399. Dynamics of a tracer granular particle as a nonequilibrium Markov process‏‎ (1 revision)
  400. Realm of validity of the Crooks relation‏‎ (1 revision)
  401. Nonexistence of classical diamagnetism and nonequilibrium fluctuation theorems for charged particles on a curved surface‏‎ (1 revision)
  402. Analyzing friction forces with the Jarzynski equality‏‎ (1 revision)
  403. Modified Fluctuation-dissipation theorem for non-equilibrium steady-states and applications to molecular motors‏‎ (1 revision)
  404. Reversible Quantum Brownian Heat Engines for Electrons‏‎ (1 revision)
  405. Nonequilibrium thermodynamics as a gauge theory‏‎ (1 revision)
  406. Observable dependence of fluctuation-dissipation relations and effective temperatures‏‎ (1 revision)
  407. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies‏‎ (1 revision)
  408. Rare events and the convergence of exponentially averaged work values‏‎ (1 revision)
  409. Nonequilibrium energetics of a single F1-ATPase molecule‏‎ (1 revision)
  410. Macroscopic constraints for the minimum entropy production principle‏‎ (1 revision)
  411. Nonequilibrium mechanics of active cytoskeletal networks‏‎ (1 revision)
  412. Fluctuations of energy flux in a simple dissipative out-of-equilibrium system‏‎ (1 revision)
  413. Nonequilibrium statistical mechanics of shear flow: Invariant quantities and current relations‏‎ (1 revision)
  414. The distribution function of entropy flow in stochastic systems‏‎ (1 revision)
  415. Optimum performance analysis of Feynman's engine as cold and hot ratchets‏‎ (1 revision)
  416. The Stokes efficiency for molecular motors and its applications‏‎ (1 revision)
  417. Effective confinement as origin of the equivalence of kinetic temperature and fluctuation-dissipation ratio in a dense shear-driven suspension‏‎ (1 revision)
  418. Reaching optimal efficiencies using nanosized photoelectric devices‏‎ (1 revision)
  419. Optimal potentials for temperature ratchets‏‎ (1 revision)
  420. The Berry phase and the pump flux in stochastic chemical kinetics‏‎ (1 revision)
  421. Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates‏‎ (1 revision)
  422. Experimental Verification of a Modified Fluctuation-Dissipation Relation for a Micron-Sized Particle in a Nonequilibrium Steady State‏‎ (1 revision)
  423. Pumped biochemical reactions, nonequilibrium circulation, and stochastic resonance‏‎ (1 revision)
  424. The entropy and efficiency of a molecular motor model‏‎ (1 revision)
  425. Fluctuation-preserving coarse graining for biochemical systems‏‎ (1 revision)
  426. The folding cooperativity of a protein is controlled by its chain topology‏‎ (1 revision)
  427. A possible classification of nonequilibrium steady states‏‎ (1 revision)
  428. Refined Second Law of Thermodynamics for Fast Random Processes‏‎ (1 revision)
  429. Optimal protocols for minimal work processes in underdamped stochastic thermodynamics‏‎ (1 revision)
  430. Dynamical fluctuations for periodically driven diffusions‏‎ (1 revision)
  431. Role of hidden slow degrees of freedom in the fluctuation theorem‏‎ (1 revision)
  432. Microscopic heat from the energetics of stochastic phenomena‏‎ (1 revision)
  433. Principles of control thermodynamics‏‎ (1 revision)
  434. Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality‏‎ (1 revision)
  435. Posterior probability and fluctuation theorem in stochastic processes‏‎ (1 revision)
  436. Violation of the fluctuation-dissipation theorem in glassy systems: Basic notions and the numerical evidence‏‎ (1 revision)
  437. The stochastic pump current and the non-adiabatic geometrical phase‏‎ (1 revision)
  438. Motion out of noisy states‏‎ (1 revision)
  439. Escorted free energy simulations: Improving convergence by reducing dissipation‏‎ (1 revision)
  440. Energy representation for nonequilibrium Brownian-like systems: Steady states and fluctuation relations‏‎ (1 revision)
  441. Measuring the fluctuation-dissipation ratio in glassy systems with no perturbing field‏‎ (1 revision)
  442. Nonequilibrium steady states in contact: Approximate thermodynamic structure and zeroth law for driven lattice gases‏‎ (1 revision)
  443. Current, maximum power and optimized efficiency of a Brownian heat engine‏‎ (1 revision)
  444. Mobility and diffusion of a tagged particle in a driven colloidal suspension‏‎ (1 revision)
  445. Current trends in finite-time thermodynamics‏‎ (1 revision)
  446. An update on the nonequilibrium linear response‏‎ (1 revision)
  447. Hydrodynamics and the fluctuation theorem‏‎ (1 revision)
  448. Nonequilibrium fluctuations in a resistor‏‎ (1 revision)
  449. Space-time phase transitions in driven kinetically constrained lattice models‏‎ (1 revision)
  450. Generating function formula of heat transfer in harmonic networks‏‎ (1 revision)
  451. Thermodynamic performance characteristics of a Brownian microscopic heat engine driven by discrete and periodic temperature field‏‎ (1 revision)
  452. Universal optimal working cycles of molecular motors‏‎ (1 revision)
  453. Heat and work fluctuations for a harmonic oscillator‏‎ (1 revision)
  454. Network representations of nonequilibrium steady states: Cycle decompositions, symmetries, and dominant paths‏‎ (1 revision)
  455. Fluctuation theorems for non-linear generalized Langevin systems‏‎ (1 revision)
  456. Inequalities for Non-equilibrium Fluctuations of Work‏‎ (1 revision)
  457. Statistics of power injection in a plate set into chaotic vibration‏‎ (1 revision)
  458. Motor-Driven Dynamics in Actin-Myosin Networks‏‎ (1 revision)
  459. Efficient extraction of free energy profiles from nonequilibrium experiments‏‎ (1 revision)
  460. Equality Connecting Energy Dissipation with a Violation of the Fluctuation-Response Relation‏‎ (1 revision)
  461. Nonequilibrium work on spin glasses in longitudinal and transverse fields‏‎ (1 revision)
  462. Statistics of entropy production in linearized stochastic Systems‏‎ (1 revision)
  463. Work fluctuation theorems for harmonic oscillators‏‎ (1 revision)
  464. Nonequilibrium fluctuation theorems in the presence of local heating‏‎ (1 revision)
  465. Work distribution functions for hysteresis loops in a single-spin system‏‎ (1 revision)
  466. Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap‏‎ (1 revision)
  467. Power and Heat Fluctuation Theorems for Electric Circuits‏‎ (1 revision)
  468. Escorted free energy simulations‏‎ (1 revision)
  469. Making molecular machines work‏‎ (1 revision)
  470. Free-energy reconstruction from experiments performed under different biasing programs‏‎ (1 revision)
  471. The stochastic pump effect and geometric phases in dissipative and stochastic systems‏‎ (1 revision)
  472. The physics of molecular motors‏‎ (1 revision)
  473. Stochastic thermodynamics in mesoscopic chemical oscillation systems‏‎ (1 revision)
  474. Symmetries of generating functionals of Langevin processes with colored multiplicative noise‏‎ (1 revision)
  475. Geometrical expression of excess entropy production‏‎ (1 revision)
  476. Fluctuation relation and heterogeneous superdiffusion in glassy transport‏‎ (1 revision)
  477. Heat flow in chains driven by thermal noise‏‎ (1 revision)
  478. Fast-growth thermodynamic integration: Error and efficiency analysis‏‎ (1 revision)
  479. Relative stability in nonuniform temperature‏‎ (1 revision)
  480. Heat fluctuations in a nonequilibrium bath‏‎ (1 revision)
  481. Stochastic Processes : Time Evolution , Symmetries and Linear Response‏‎ (1 revision)
  482. Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer‏‎ (1 revision)
  483. Test of the fluctuation theorem for stochastic entropy production in a nonequilibrium steady state‏‎ (1 revision)
  484. Thermodynamics and kinetics of molecular motors‏‎ (1 revision)
  485. Entropy production and fluctuation theorem along a stochastic limit cycle‏‎ (1 revision)
  486. Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models‏‎ (1 revision)
  487. Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium‏‎ (1 revision)
  488. Work fluctuations for a harmonic oscillator driven by an external random force‏‎ (1 revision)
  489. Computing the optimal protocol for finite-time processes in stochastic thermodynamics‏‎ (1 revision)
  490. Thermophoretic depletion follows boltzmann distribution‏‎ (1 revision)
  491. Measurement of stochastic entropy production‏‎ (1 revision)
  492. The modified Sutherland-Einstein relation for diffusive non-equilibria‏‎ (1 revision)
  493. Irreversible dynamics of a massive intruder in dense granular fluids‏‎ (1 revision)
  494. Stochastic thermodynamics of single enzymes and molecular motors‏‎ (1 revision)
  495. Effective temperatures of a heated Brownian particle‏‎ (1 revision)
  496. Generalized einstein or green-kubo relations for active biomolecular transport‏‎ (1 revision)
  497. Modified fluctuation-dissipation theorem near non-equilibrium states and applications to the Glauber-Ising chain‏‎ (1 revision)
  498. Optimum protocol for fast-switching free-energy calculations‏‎ (1 revision)
  499. Improving fast-switching free energy estimates by dynamical freezing‏‎ (1 revision)
  500. Network theory of microscopic and macroscopic behavior of master equation systems‏‎ (1 revision)

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