Santa Fe Institute Collaboration Platform

COMPLEX TIME: Adaptation, Aging, & Arrow of Time

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Contact: Caitlin Lorraine McShea, Program Manager, cmcshea@santafe.edu

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  1. 2019 Advisory Board Meeting
  2. 2019 Advisory Board Meeting/MyPage
  3. A Major Role of the Macrophage in Quantitative Genetic Regulation of Immunoresponsiveness and Antiinfectious Immunity
  4. A Neural Network Model of Retrieval-Induced Forgetting
  5. A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period
  6. A Simpler Model of the Human Circadian Pacemaker
  7. A Stab at Time
  8. A Stab at Time/AmyPChen
  9. A Stab at Time/Day 1 Continental Breakfast at SFI
  10. A Stab at Time/Day 1 Lunch (in SFI Kitchen)
  11. A Stab at Time/Day 1 PM Break
  12. A Stab at Time/Day 1 Transportation back to Hotel Santa Fe by carpool
  13. A Stab at Time/Day 1 Transportation from Hotel Santa Fe to SFI by carpool
  14. A Stab at Time/Day 2 AM Break
  15. A Stab at Time/Day 2 Continental Breakfast
  16. A Stab at Time/Day 2 Lunch (in SFI Kitchen)
  17. A Stab at Time/Day 2 PM Break
  18. A Stab at Time/Day 2 Transportation back to Hotel Santa Fe by carpool
  19. A Stab at Time/Day 2 Transportation from Hotel Santa Fe to SFI by carpool
  20. A Stab at Time/GregorySpears
  21. A Stab at Time/Group dinner at La Choza
  22. A Stab at Time/Group dinner at Paloma
  23. A Stab at Time/Group discussion
  24. A Stab at Time/JockSoto
  25. A Stab at Time/JohnHarte
  26. A Stab at Time/KaroleArmitage
  27. A Stab at Time/Project introduction
  28. A Stab at Time/Project summary, writing for the wiki
  29. A Stab at Time/Questions/discussion about representing time&
  30. A Stab at Time/Questions/discussion about representing time; script discussion
  31. A Stab at Time/Recap from Day 1
  32. A Stab at Time/Script writing
  33. A Stab at Time/Storytelling, partnering in time, dance experience of time, Navajo mother observation
  34. A Stab at Time/Time: history of thinking about time, CPT time, matter and anti-matter, mirroring
  35. A Stab at Time/Time in music
  36. A Stab at Time/Welcome, SFI/JSMF Complex Time: Adaptation, Aging, Arrow of Time research theme
  37. A Tissue Engineered Model of Aging: Interdependence and Cooperative Effects in Failing Tissues
  38. A communal catalogue reveals Earth's multiscale microbial diversity
  39. A high-bias low-variance introduction to machine learning for physicists
  40. A model comparison approach shows stronger support for economic models of fertility decline
  41. A quantitative model for the effects of light on the amplitude and phase of the deep circadian pacemaker based on human data
  42. A robust measure of food web intervality
  43. A theory of age-dependent mutation and senescence
  44. A truer measure of our ignorance
  45. A two process model of sleep regulation
  46. Abnormal Locus Coeruleus Sleep Activity Alters Sleep Signatures of Memory Consolidation and Impairs Place Cell Stability and Spatial Memory
  47. Adaptive foraging allows the maintenance of biodiversity of pollination networks
  48. Addition of a non-photic component to a light-based mathematical model of the human circadian pacemaker
  49. Age-structured and stage-structured population dynamics
  50. Ageing-associated disorders
  51. Ageing and the circadian and homeostatic regulation of human sleep during forced desynchrony of rest, melatonin and temperature rhythms
  52. Aging, Rejuvenation, and Epigenetic Reprogramming: Resetting the Aging Clock
  53. Aging, mortality, and the fast growth trade-off of Schizosaccharomyces pombe
  54. Aging and Adaptation in Infectious Diseases
  55. Aging and Adaptation in Infectious Diseases/AndrewPDobson
  56. Aging and Adaptation in Infectious Diseases/Breakout Group Discussions
  57. Aging and Adaptation in Infectious Diseases/Continental/Breakfast
  58. Aging and Adaptation in Infectious Diseases/Day 1 Continental Breakfast (outside SFI Noyce Conference Room)
  59. Aging and Adaptation in Infectious Diseases/Day 1 Group Dinner at La Choza
  60. Aging and Adaptation in Infectious Diseases/Day 1 Lunch (outside SFI Noyce Conference Room)
  61. Aging and Adaptation in Infectious Diseases/Day 1 PM Break
  62. Aging and Adaptation in Infectious Diseases/Day 2 Continental Breakfast (outside SFI Noyce Conference Room)
  63. Aging and Adaptation in Infectious Diseases/Day 2 Group Dinner at Restaurant Martin
  64. Aging and Adaptation in Infectious Diseases/Day 2 Lunch (outside SFI Noyce Conference Room)
  65. Aging and Adaptation in Infectious Diseases/Day 2 PM Break
  66. Aging and Adaptation in Infectious Diseases/Day 3 Continental Breakfast (outside SFI Noyce Conference Room)
  67. Aging and Adaptation in Infectious Diseases/Day 3 Lunch (outside SFI Noyce Conference Room); Adjourn
  68. Aging and Adaptation in Infectious Diseases/Discussion, development of themes, and organization of breakout groups
  69. Aging and Adaptation in Infectious Diseases/Group Presentations and Plans for Next Steps
  70. Aging and Adaptation in Infectious Diseases/Introductions and Workshop Overview
  71. Aging and Adaptation in Infectious Diseases/SFI/JSMF Aging, Adaptation, and the Arrow of Time Research Theme; Overview
  72. Aging and Adaptation in Infectious Diseases/Session I: Immune System Dynamics and Age
  73. Aging and Adaptation in Infectious Diseases/Session IIA: Viral Evolution, Dynamics, and Therapies
  74. Aging and Adaptation in Infectious Diseases/Session IIB: Viral Evolution, Dynamics, and Therapies
  75. Aging and Adaptation in Infectious Diseases/Session III: Host Pathogen (co)Adaptation, Diversification, and Age
  76. Aging and Adaptation in Infectious Diseases/Session IV: Complex Rhythms, environment, and aging in epidemiology
  77. Aging and Adaptation in Infectious Diseases/Welcome
  78. Aging and Adaptation in Infectious Diseases II
  79. Aging and Adaptation in Infectious Diseases II/Day 1: Discussion, development of themes, and structure of breakout groups
  80. Aging and Adaptation in Infectious Diseases II/Day 1 Continental Breakfast (outside SFI Noyce Conference Room)
  81. Aging and Adaptation in Infectious Diseases II/Day 1 Lunch (outside SFI Noyce Conference Room)
  82. Aging and Adaptation in Infectious Diseases II/Day 1 PM Break
  83. Aging and Adaptation in Infectious Diseases II/Day 2 Continental Breakfast (outside SFI Noyce Conference Room)
  84. Aging and Adaptation in Infectious Diseases II/Day 2 Lunch (outside SFI Noyce Conference Room)
  85. Aging and Adaptation in Infectious Diseases II/Day 2 PM Break
  86. Aging and Adaptation in Infectious Diseases II/Day 2 Working Group Breakout Session I
  87. Aging and Adaptation in Infectious Diseases II/Day 2 Working Group Breakout Session II
  88. Aging and Adaptation in Infectious Diseases II/Day 3 Continental Breakfast (outside SFI Noyce Conference Room)
  89. Aging and Adaptation in Infectious Diseases II/Day 3 Lunch (outside SFI Noyce Conference Room)
  90. Aging and Adaptation in Infectious Diseases II/Day 3 PM Break
  91. Aging and Adaptation in Infectious Diseases II/Day 3 Working Group Breakout Session I
  92. Aging and Adaptation in Infectious Diseases II/Day 3 Working Group Breakout Session II
  93. Aging and Adaptation in Infectious Diseases II/Day 4 Continental Breakfast (outside Collins Conference Room)
  94. Aging and Adaptation in Infectious Diseases II/Day 4 Lunch (outside Collins Conference Room)
  95. Aging and Adaptation in Infectious Diseases II/Day 4 PM Break
  96. Aging and Adaptation in Infectious Diseases II/Day 4 Working Group Breakout Session I
  97. Aging and Adaptation in Infectious Diseases II/Day 4 Working Group Breakout Session II
  98. Aging and Adaptation in Infectious Diseases II/Discussion of plans for wrapping up and final session breakout group presentations
  99. Aging and Adaptation in Infectious Diseases II/Group Dinner at Radish & Rye
  100. Aging and Adaptation in Infectious Diseases II/Introductions and Workshop Overview
  101. Aging and Adaptation in Infectious Diseases II/MyPage
  102. Aging and Adaptation in Infectious Diseases II/Session I: Immune System: Architecture and Dynamics
  103. Aging and Adaptation in Infectious Diseases II/Session II: Immune System: Aging and Heterogeneity
  104. Aging and Adaptation in Infectious Diseases II/Session IV: Short Talks for Late Arrival
  105. Aging and Adaptation in Infectious Diseases II/Session V: Aging and the Arrow of Time –Breakout Group Updates and Broader Themes of the SFI/JSMF Initiative
  106. Aging and Adaptation in Infectious Diseases II/Session VI: Breakout group presentations, discussion of themes, and next steps
  107. Aging and Adaptation in Infectious Diseases II/Summary of Day 1: Each speaker from Day 1 gives a 5 minute, two slides summary (intended to bring late arrivals up to date)
  108. Aging and Adaptation in Infectious Diseases II/Welcome
  109. Aging and Adaptation in Infectious Diseases III
  110. Aging and Adaptation in Infectious Diseases III/Breakout Group Presentations
  111. Aging and Adaptation in Infectious Diseases III/Closing and next steps
  112. Aging and Adaptation in Infectious Diseases III/Day 1 Continental Breakfast (outside SFI Noyce Conference Room)
  113. Aging and Adaptation in Infectious Diseases III/Day 1 Discussion, development of themes, and structure of breakout groups for the rest of the week
  114. Aging and Adaptation in Infectious Diseases III/Day 1 Lunch (outside SFI Noyce Conference Room)
  115. Aging and Adaptation in Infectious Diseases III/Day 1 PM Break
  116. Aging and Adaptation in Infectious Diseases III/Day 2 Continental Breakfast (outside SFI Noyce Conference Room)
  117. Aging and Adaptation in Infectious Diseases III/Day 2 Group Discussion and Working Group Planning Sessions
  118. Aging and Adaptation in Infectious Diseases III/Day 2 Lunch (outside SFI Noyce Conference Room)
  119. Aging and Adaptation in Infectious Diseases III/Day 2 Working Group Breakout Sessions
  120. Aging and Adaptation in Infectious Diseases III/Day 3 Continental Breakfast (outside SFI Noyce Conference Room)
  121. Aging and Adaptation in Infectious Diseases III/Day 3 Lunch (outside SFI Noyce Conference Room)
  122. Aging and Adaptation in Infectious Diseases III/Day 3 PM Break
  123. Aging and Adaptation in Infectious Diseases III/Day 3 Working Group Breakout Sessions I
  124. Aging and Adaptation in Infectious Diseases III/Day 3 Working Group Breakout Sessions II
  125. Aging and Adaptation in Infectious Diseases III/Day 3 Working Group Breakout Sessions III
  126. Aging and Adaptation in Infectious Diseases III/Day 4 Continental Breakfast (outside Noyce Conference Room)
  127. Aging and Adaptation in Infectious Diseases III/Day 4 Lunch (outside SFI Noyce Conference Room)
  128. Aging and Adaptation in Infectious Diseases III/Discussion: Plans for an SFI publication / Presentation from SFI Press
  129. Aging and Adaptation in Infectious Diseases III/Group Dinner
  130. Aging and Adaptation in Infectious Diseases III/KatieGostic
  131. Aging and Adaptation in Infectious Diseases III/Optional additional Working Group Sessions (for those staying that afternoon)
  132. Aging and Adaptation in Infectious Diseases III/Re-assembling: Brief updates and plans for Day 3
  133. Aging and Adaptation in Infectious Diseases III/Session I: Immune System: Innate/Adaptive collaboration
  134. Aging and Adaptation in Infectious Diseases III/Session II: Diversity, adaptive immunity, and age
  135. Aging and Adaptation in Infectious Diseases III/Session III: Disease History, Aging, and Complex Time
  136. Aging and Adaptation in Infectious Diseases III/Welcome, Introductions and Workshop Overview
  137. Aging and measures of processing speed
  138. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life
  139. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/A time to sleep and a time to die
  140. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/About time: Precision measurements and emergent simplicities in an individual bacterial cell's stochastic aging dynamics.
  141. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/All creatures fast and slow: senescence and longevity across the tree of life
  142. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Bree Aldridge
  143. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Day 1 Continental Breakfast (outside SFI Collins Conference Room)
  144. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Discussion
  145. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/JacopoGrilli
  146. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/LinChao
  147. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/MartinPicard
  148. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/MatteoOsella
  149. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/More questions than answers: relations between quantittative physiology and aging in E. coli
  150. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Overview of the meeting
  151. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Owen Jones
  152. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/SabrinaSpencer
  153. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/SrividyaIyer-Biswas
  154. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Stochastic processes shape senescence, beyond genes, and environment
  155. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Stochasticity, immortality, and mortality in E. coli
  156. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Systematic Physiology and Aging Across Diverse Organisms
  157. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/The long and the short of it: mycobacterial aging, asymmetry, and stress tolerance
  158. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Time perception and the rate of cellular aging outside the human body: an energetic perspective
  159. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/Toward a Molecular Understanding of Quiescence versus Senescence
  160. Aging in Single-celled Organisms: from Bacteria to the Whole Tree of Life/UliSteiner
  161. Aging in complex interdependency networks
  162. Altered avalanche dynamics in a developmental NMDAR hypofunction model of cognitive impairment
  163. Amplification or suppression: Social networks and the climate change-migration association in rural Mexico
  164. An Optimization-Based Approach to Understanding Sensory Systems
  165. An exploration of the temporal dynamics
  166. An opposite role for tau in circadian rhythms revealed by mathematical modeling
  167. Antidepressant suppression of non-REM sleep spindles and REM sleep impairs hippocampus-dependent learning while augmenting striatum-dependent learning
  168. Are There too Many Farms in the World? Labor-Market Transaction Costs, Machine Capacities and Optimal Farm Size
  169. Are individual differences in sleep and circadian timing amplified by use of artificial light sources?
  170. Asking the Right Questions in Alzheimer’s Research
  171. Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities
  172. Brain computer interface
  173. Brain disorders? Not really: Why network structures block reductionism in psychopathology research
  174. Brain state stability during working memory is explained by network control theory, modulated by dopamine D1/D2 receptor function, and diminished in schizophrenia
  175. CD4 memory T cell levels predict life span in genetically heterogeneous mice.
  176. Chesapeake requiem
  177. Cholinergic modulation of cognitive processing: Insights drawn from computational models
  178. Choosing Prediction Over Explanation in Psychology: Lessons From Machine Learning
  179. Circadian pacemaker interferes with sleep onset at specific times each day: Role in insomnia
  180. Circadian phenotype impacts the brain's resting-state functional connectivity, attentional performance, and sleepiness
  181. Circadian regulation dominates homeostatic control of sleep length and prior wake length in humans
  182. Circadian temperature and melatonin rhythms, sleep, and neurobehavioral function in humans living on a 20-h day
  183. Climate shocks and rural-urban migration in Mexico: exploring nonlinearities and thresholds
  184. Climate shocks and the timing of migration from Mexico
  185. Cognitive Regime Shift II - When/why/how the Brain Breaks
  186. Cognitive Regime Shift II - When/why/how the Brain Breaks/(Optional) SFI Community Lecture at the Lensic Performing Arts Center by Melanie Mitchell: Artificial Intelligence: A Guide for Thinking Humans
  187. Cognitive Regime Shift II - When/why/how the Brain Breaks/AmyPChen2
  188. Cognitive Regime Shift II - When/why/how the Brain Breaks/ArtemyKolchinsky
  189. Cognitive Regime Shift II - When/why/how the Brain Breaks/CaterinaGratton
  190. Cognitive Regime Shift II - When/why/how the Brain Breaks/Cocktail
  191. Cognitive Regime Shift II - When/why/how the Brain Breaks/Collective Computation and Critical Transitions
  192. Cognitive Regime Shift II - When/why/how the Brain Breaks/DanielleBassett
  193. Cognitive Regime Shift II - When/why/how the Brain Breaks/DavidKrakauer
  194. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 1 Continental Breakfast
  195. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 1 Lunch
  196. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 1 Shuttle Departing Hotel Santa Fe (at lobby) to SFI
  197. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 1 Shuttle Departing SFI to Hotel Santa Fe
  198. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 1 wiki platform work time
  199. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 2 Continental Breakfast
  200. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 2 Lunch
  201. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 2 Shuttle Departing SFI to Hotel Santa Fe
  202. Cognitive Regime Shift II - When/why/how the Brain Breaks/Day 2 wiki platform work time
  203. Cognitive Regime Shift II - When/why/how the Brain Breaks/DietmarPlenz
  204. Cognitive Regime Shift II - When/why/how the Brain Breaks/Ehren Newman
  205. Cognitive Regime Shift II - When/why/how the Brain Breaks/GaganWig
  206. Cognitive Regime Shift II - When/why/how the Brain Breaks/Group dinner
  207. Cognitive Regime Shift II - When/why/how the Brain Breaks/Introductory Remarks
  208. Cognitive Regime Shift II - When/why/how the Brain Breaks/JackGallant
  209. Cognitive Regime Shift II - When/why/how the Brain Breaks/JacopoGrilli
  210. Cognitive Regime Shift II - When/why/how the Brain Breaks/JohnKrakauer
  211. Cognitive Regime Shift II - When/why/how the Brain Breaks/MyPage
  212. Cognitive Regime Shift II - When/why/how the Brain Breaks/NikolausKriegeskorte
  213. Cognitive Regime Shift II - When/why/how the Brain Breaks/PaulGarcia
  214. Cognitive Regime Shift II - When/why/how the Brain Breaks/RandyMcIntosh
  215. Cognitive Regime Shift II - When/why/how the Brain Breaks/Recap from Day 1
  216. Cognitive Regime Shift II - When/why/how the Brain Breaks/RichardFrackowiak
  217. Cognitive Regime Shift II - When/why/how the Brain Breaks/RobertoCabeza
  218. Cognitive Regime Shift II - When/why/how the Brain Breaks/Robustness of Brain Function
  219. Cognitive Regime Shift II - When/why/how the Brain Breaks/Round Table Discussion 1: The nature of compensation and cognitive reserves
  220. Cognitive Regime Shift II - When/why/how the Brain Breaks/Round Table Discussion 2: The multiple scales of damage – from cells to networks
  221. Cognitive Regime Shift II - When/why/how the Brain Breaks/Round Table Discussion 3: Models for transforming circuits (neural) into tasks (psychology)
  222. Cognitive Regime Shift II - When/why/how the Brain Breaks/RussPoldrack
  223. Cognitive Regime Shift II - When/why/how the Brain Breaks/StevenPetersen
  224. Cognitive Regime Shift II - When/why/how the Brain Breaks/SusanFitzpatrick
  225. Cognitive Regime Shift II - When/why/how the Brain Breaks/Task-performing neural network models enable us to test theories of brain computation with brain and behavioral data
  226. Cognitive Regime Shift II - When/why/how the Brain Breaks/ViktorJirsa
  227. Cognitive Regime Shift I - When the Brain Breaks
  228. Cognitive Regime Shift I - When the Brain Breaks/"Prion dynamics and latency"
  229. Cognitive Regime Shift I - When the Brain Breaks/"The use of large-scale brain correlations to study aging and some interesting issues that they raise"
  230. Cognitive Regime Shift I - When the Brain Breaks/CaterinaGratton
  231. Cognitive Regime Shift I - When the Brain Breaks/Consciousness, Cognition, and the Prefrontal Cortex
  232. Cognitive Regime Shift I - When the Brain Breaks/DavidKrakauer
  233. Cognitive Regime Shift I - When the Brain Breaks/Day 1 Continental Breakfast (outside SFI Collins Conference Room)
  234. Cognitive Regime Shift I - When the Brain Breaks/Day 1 Group Dinner at La Boca
  235. Cognitive Regime Shift I - When the Brain Breaks/Day 1 Lunch (outside SFI Collins Conference Room)
  236. Cognitive Regime Shift I - When the Brain Breaks/Day 1 PM Break
  237. Cognitive Regime Shift I - When the Brain Breaks/Day 2 Continental Breakfast (outside SFI Collins Conference Room)
  238. Cognitive Regime Shift I - When the Brain Breaks/Day 2 Dinner: self-organize
  239. Cognitive Regime Shift I - When the Brain Breaks/Day 2 Lunch (outside SFI Collins Conference Room)
  240. Cognitive Regime Shift I - When the Brain Breaks/Day 2 PM Break
  241. Cognitive Regime Shift I - When the Brain Breaks/Day 3 Continental Breakfast (outside SFI Collins Conference Room)
  242. Cognitive Regime Shift I - When the Brain Breaks/Day 3 Lunch (outside SFI Collins Conference Room); Adjourn
  243. Cognitive Regime Shift I - When the Brain Breaks/GaganWig
  244. Cognitive Regime Shift I - When the Brain Breaks/Gene Networks in Brain and Neurodegenerative Disorders
  245. Cognitive Regime Shift I - When the Brain Breaks/GeorgeMashour
  246. Cognitive Regime Shift I - When the Brain Breaks/GrahamHCreasey
  247. Cognitive Regime Shift I - When the Brain Breaks/How Does Context Impact Cortical Development
  248. Cognitive Regime Shift I - When the Brain Breaks/JacopoGrilli
  249. Cognitive Regime Shift I - When the Brain Breaks/Large-scale Brain Network Changes Across the Healthy Adult Human Lifespan: Relations to Cognition and First Steps toward Identifying Potential Risk Factors of Brain Decline
  250. Cognitive Regime Shift I - When the Brain Breaks/Network Breakdown Phenomena

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